Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Forward (+)

18894378 .. 18897406

Gene Structure 3029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGGTTGTTTACATTCCAAAACTGCTAATCTTCCTTCTTCTGATGATCCATCAGCTCCAAACAAACCAGAATCAGTAAATGGGGACCAAGTGGATCAGGAAATCCAAAATTTCAAAGAATTTGAACTAAATGAGTTGAGGAAAGCTACCAATGGGTTTAGTCCTAGCTGCATTGTCTCTGAAGGTGGAGAGAAAGCTCCTAATGTCGTTTACAGAGGGAAGCTTGAAGGGAATCATCTTGTAGCTATCAAGCGATTCTCTAGGCAATCTTGGCCTGATGCTCAACAGTTTGTGGTGGAAGCGACTGGTGTTGGGAAGCTTAGAAACAAGAGAATAGTTAGTTTGATCGGTTGCTGTGCTGAAGGAGATGAGAGGTTGTTGGTGGCAGAGTATATGCCCAATGATACTCTCTCAAAGCATCTCTTCCACTGGGAAAAGCAGCCACTTCCATGGGATATGCGTGTTCGAATCGCAGACTATATTGCAGAAGCACTTGATTACTGCAATATTGAGAACCGAAAAATCTATCATGACCTCAATGCATACAGAATCCTCTTCGACGAGGAAGGTGATCCTCGTCTATCTACTTTTGGTCTTATGAAGAACAGTAGAGATGGCAAAAGCTATAGCACAAACTTAGCTTATACTCCACCTGAGTTTTTACGGACAGGTAGAGTCATTCCTGAAAGTGTGATATTCAGTTATGGAACTATTCTTTTAGATCTTTTAAGCGGCAAACACATTCCACCTAGCCATGCCCTTGATATCATAAGAGGGAAAAATGCTTTGCTTCTTATGGATTCATCTCTTGAAGGGCAATATGCGAATGATGATGCGACTAAATTAGTTGATCTTGCTTCAAAATGCCTTCAATCAGAGGCAAAGGATCGACCAGATACCAAATTTCTTCTCTCTGCAGTAGCACCACTACAAAAGCAAGAAGAGGTTGCTTCTCATGTCTTAATGGGCTTACCAAAGAACACAGTAATATTACCAACTATGCTTTCTCCTCTTGGAAAGGCCTGTGCAAAGATGGACCTTGCGACATTTCACGACATTTTGCTTAAAACCGGTTACAGAGATGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAACAAGTGCAGGAGATGCTTAACACAAAAAAGTTCGGGGACATTGCTTTCAGAGACAAGGATTTCAAGAACTCAATTGAATACTACTCCAAGTTGGTGGGGATGATGCCGGTTCCTTCTGCAACAGTTTTCGCTAGACGGGCTTTCTCCTACTTAATGACAGACCAACAGGAGCTTGCACTGAGAGATGCAATGCAGGCACAGGTGTGCATACCAGAATGGCCAACAGCTTTTTACTTGCAGGCTTTAGCGCTCTCAAAGCTCGGAATGGAGACTGATGCTCAAGATATGCTCAACGATGGCGCTGCATATGATGCTAAGCGACAGAATAGCTGGCGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

489

Amino Acids

54.97

Weight (kDa)

5.47

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	69 - 301	2.9e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	69 - 304	9.4e-25	Protein tyrosine and serine/threonine kinase
TPR_BSK1_C	PF25575	340 - 457	2.4e-52	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	4 cut(s)	41, 102, 566, 894
AcoI	YGGCCR	1 cut(s)	1346
AcsI	RAATTY	3 cut(s)	109, 119, 902
AcuI	CTGAAG	2 cut(s)	201, 381
AfeI	AGCGCT	1 cut(s)	1377
AgeI	ACCGGT	1 cut(s)	1070
AgsI	TTSAA	9 cut(s)	115, 125, 227, 812, 861, 872, 1115, 1192, 1205
AjuI	GAANNNNNNNTTGG	2 cut(s)	988, 1020
AleI	CACNNNNGTG	1 cut(s)	1330
Alw26I	GTCTC	3 cut(s)	181, 1173, 1391
AlwI	GGATC	4 cut(s)	41, 102, 566, 894
Aor51HI	AGCGCT	1 cut(s)	1377
AoxI	GGCC	3 cut(s)	272, 1020, 1346
ApeKI	GCWGC	4 cut(s)	168, 439, 1430, 1464
ApoI	RAATTY	3 cut(s)	109, 119, 902
AsiGI	ACCGGT	1 cut(s)	1070
AspLEI	GCGC	3 cut(s)	1378, 1430, 1464
AspS9I	GGNCC	2 cut(s)	85, 1036
AsuHPI	GGTGA	1 cut(s)	581
AsuII	TTCGAA	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	85, 1036
BalI	TGGCCA	1 cut(s)	1348
BbvI	GCAGC	4 cut(s)	155, 451, 1417, 1451
BccI	CCATC	4 cut(s)	58, 608, 1027, 1418
BcgI	CGANNNNNNTGC	2 cut(s)	1412, 1446
BcoDI	GTCTC	3 cut(s)	181, 1173, 1391
BfaI	CTAG	4 cut(s)	165, 261, 750, 1260
BfmI	CTRYAG	2 cut(s)	625, 915
BfoI	RGCGCY	3 cut(s)	1379, 1431, 1465
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	5 cut(s)	169, 440, 733, 1431, 1465
BlpI	GCTNAGC	1 cut(s)	1443
BlsI	GCNGC	5 cut(s)	170, 441, 734, 1432, 1466
Bme18I	GGWCC	2 cut(s)	85, 1036
BmgT120I	GGNCC	2 cut(s)	85, 1036
BmiI	GGNNCC	2 cut(s)	86, 1239
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	8 cut(s)	268, 427, 823, 1131, 1221, 1303, 1393, 1429
BmuI	ACTGGG	1 cut(s)	439
Bpu1102I	GCTNAGC	1 cut(s)	1443
Bpu14I	TTCGAA	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	1392
BsaJI	CCNNGG	1 cut(s)	449
BsaWI	WCCGGW	1 cut(s)	1070
Bse118I	RCCGGY	2 cut(s)	1070, 1234
Bse1I	ACTGG	2 cut(s)	310, 434
Bse3DI	GCAATG	2 cut(s)	1167, 1323
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	1233
BseMI	GCAATG	2 cut(s)	1167, 1323
BseMII	CTCAG	2 cut(s)	645, 1298
BseNI	ACTGG	2 cut(s)	310, 434
BseRI	GAGGAG	1 cut(s)	999
BseXI	GCAGC	4 cut(s)	155, 451, 1417, 1451
BsgI	GTGCAG	2 cut(s)	1113, 1154
BshFI	GGCC	3 cut(s)	274, 1022, 1348
BshTI	ACCGGT	1 cut(s)	1070
BsiSI	CCGG	2 cut(s)	1071, 1235
BslFI	GGGAC	2 cut(s)	98, 1178
BsmAI	GTCTC	3 cut(s)	181, 1173, 1391
BsmFI	GGGAC	2 cut(s)	98, 1178
BsnI	GGCC	3 cut(s)	274, 1022, 1348
Bsp119I	TTCGAA	1 cut(s)	466
Bsp143I	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
Bsp1720I	GCTNAGC	1 cut(s)	1443
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	3 cut(s)	274, 1022, 1348
BspCNI	CTCAG	2 cut(s)	646, 1299
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	2 cut(s)	86, 1239
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	4 cut(s)	41, 102, 566, 894
BspT104I	TTCGAA	1 cut(s)	466
BsrDI	GCAATG	2 cut(s)	1167, 1323
BsrFI	RCCGGY	2 cut(s)	1070, 1234
BsrI	ACTGG	2 cut(s)	310, 434
BssAI	RCCGGY	2 cut(s)	1070, 1234
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
BssT1I	CCWWGG	1 cut(s)	449
Bst4CI	ACNGT	4 cut(s)	288, 608, 985, 1252
Bst6I	CTCTTC	3 cut(s)	428, 560, 936
BstAPI	GCANNNNNTGC	2 cut(s)	1141, 1439
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	4 cut(s)	1302, 1323, 1368, 1460
BstDEI	CTNAG	5 cut(s)	320, 637, 654, 1307, 1443
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	1 cut(s)	1233
BstH2I	RGCGCY	3 cut(s)	1379, 1431, 1465
BstHHI	GCGC	3 cut(s)	1378, 1430, 1464
BstKTI	GATC	7 cut(s)	49, 97, 348, 574, 724, 853, 889
BstMAI	GTCTC	3 cut(s)	181, 1173, 1391
BstMBI	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
BstMWI	GCNNNNNNNGC	7 cut(s)	271, 1141, 1265, 1322, 1384, 1439, 1464
BstSFI	CTRYAG	2 cut(s)	625, 915
BstV1I	GCAGC	4 cut(s)	155, 451, 1417, 1451
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	2 cut(s)	450, 1222
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	274, 1022, 1348
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	1233
BtsIMutI	CAGTG	2 cut(s)	427, 1304
Cac8I	GCNNGC	4 cut(s)	1302, 1323, 1368, 1460
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	3 cut(s)	1378, 1430, 1464
Cfr10I	RCCGGY	2 cut(s)	1070, 1234
Cfr13I	GGNCC	2 cut(s)	85, 1036
CspAI	ACCGGT	1 cut(s)	1070
CviAII	CATG	4 cut(s)	450, 530, 755, 956
DdeI	CTNAG	5 cut(s)	320, 637, 654, 1307, 1443
DpnI	GATC	7 cut(s)	48, 96, 347, 573, 723, 852, 888
DpnII	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
EaeI	YGGCCR	1 cut(s)	1346
Eam1104I	CTCTTC	3 cut(s)	428, 560, 936
EarI	CTCTTC	3 cut(s)	428, 560, 936
Eco130I	CCWWGG	1 cut(s)	449
Eco147I	AGGCCT	1 cut(s)	1022
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	2 cut(s)	85, 1036
Eco47III	AGCGCT	1 cut(s)	1377
Eco57I	CTGAAG	2 cut(s)	201, 381
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	449
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	4 cut(s)	453, 533, 758, 959
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	98, 1178
FatI	CATG	4 cut(s)	449, 529, 754, 955
FauNDI	CATATG	1 cut(s)	1435
Fnu4HI	GCNGC	5 cut(s)	169, 440, 733, 1431, 1465
FokI	GGATG	1 cut(s)	1240
Fsp4HI	GCNGC	5 cut(s)	169, 440, 733, 1431, 1465
FspBI	CTAG	4 cut(s)	165, 261, 750, 1260
GlaI	GCGC	3 cut(s)	1377, 1429, 1463
GluI	GCNGC	5 cut(s)	169, 440, 733, 1431, 1465
HaeII	RGCGCY	3 cut(s)	1379, 1431, 1465
HaeIII	GGCC	3 cut(s)	274, 1022, 1348
HapII	CCGG	2 cut(s)	1071, 1235
HhaI	GCGC	3 cut(s)	1378, 1430, 1464
Hin1II	CATG	4 cut(s)	453, 533, 758, 959
Hin6I	GCGC	3 cut(s)	1376, 1428, 1462
HinP1I	GCGC	3 cut(s)	1376, 1428, 1462
HindIII	AAGCTT	2 cut(s)	221, 317
HinfI	GANTC	7 cut(s)	71, 232, 255, 468, 549, 675, 800
HpaII	CCGG	2 cut(s)	1071, 1235
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	2 cut(s)	11, 211
Hpy188I	TCNGA	5 cut(s)	43, 181, 877, 1178, 1391
Hpy188III	TCNNGA	8 cut(s)	98, 530, 683, 809, 1052, 1115, 1192, 1409
Hpy8I	GTNNAC	2 cut(s)	11, 211
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	9 cut(s)	45, 176, 221, 356, 560, 806, 878, 1082, 1251
HpyCH4III	ACNGT	4 cut(s)	288, 608, 985, 1252
HpyF10VI	GCNNNNNNNGC	7 cut(s)	271, 1141, 1265, 1322, 1384, 1439, 1464
HpyF3I	CTNAG	5 cut(s)	320, 637, 654, 1307, 1443
Hsp92II	CATG	4 cut(s)	453, 533, 758, 959
HspAI	GCGC	3 cut(s)	1376, 1428, 1462
Kzo9I	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
LmnI	GCTCC	3 cut(s)	61, 202, 1297
Lsp1109I	GCAGC	4 cut(s)	155, 451, 1417, 1451
LweI	GCATC	8 cut(s)	268, 427, 823, 1131, 1221, 1303, 1393, 1429
MaeI	CTAG	4 cut(s)	165, 261, 750, 1260
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	7 cut(s)	48, 96, 347, 573, 723, 852, 888
MboI	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
MboII	GAAGA	8 cut(s)	23, 30, 415, 547, 613, 899, 953, 1097
MfeI	CAATTG	1 cut(s)	1200
MflI	RGATCY	1 cut(s)	721
MlsI	TGGCCA	1 cut(s)	1348
MluCI	AATT	5 cut(s)	109, 119, 842, 902, 1200
MluNI	TGGCCA	1 cut(s)	1348
MlyI	GAGTC	1 cut(s)	684
Mox20I	TGGCCA	1 cut(s)	1348
Mph1103I	ATGCAT	1 cut(s)	544
MscI	TGGCCA	1 cut(s)	1348
MseI	TTAA	5 cut(s)	728, 962, 1065, 1146, 1280
MslI	CAYNNNNRTG	2 cut(s)	448, 1330
Msp20I	TGGCCA	1 cut(s)	1348
MspI	CCGG	2 cut(s)	1071, 1235
MunI	CAATTG	1 cut(s)	1200
MwoI	GCNNNNNNNGC	7 cut(s)	271, 1141, 1265, 1322, 1384, 1439, 1464
NcoI	CCATGG	1 cut(s)	449
NdeI	CATATG	1 cut(s)	1435
NdeII	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
NlaIII	CATG	4 cut(s)	453, 533, 758, 959
NlaIV	GGNNCC	2 cut(s)	86, 1239
NsiI	ATGCAT	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	1330
PagI	TCATGA	1 cut(s)	529
PceI	AGGCCT	1 cut(s)	1022
PfeI	GAWTC	6 cut(s)	71, 232, 255, 468, 549, 800
PinAI	ACCGGT	1 cut(s)	1070
PkrI	GCNGC	5 cut(s)	170, 441, 734, 1432, 1466
PleI	GAGTC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	683
PspN4I	GGNNCC	2 cut(s)	86, 1239
PspPI	GGNCC	2 cut(s)	85, 1036
PstI	CTGCAG	1 cut(s)	919
PsuI	RGATCY	1 cut(s)	721
RseI	CAYNNNNRTG	2 cut(s)	448, 1330
SaqAI	TTAA	5 cut(s)	728, 962, 1065, 1146, 1280
SatI	GCNGC	5 cut(s)	169, 440, 733, 1431, 1465
Sau3AI	GATC	7 cut(s)	46, 94, 345, 571, 721, 850, 886
Sau96I	GGNCC	2 cut(s)	85, 1036
SchI	GAGTC	1 cut(s)	684
SfaNI	GCATC	8 cut(s)	268, 427, 823, 1131, 1221, 1303, 1393, 1429
SfcI	CTRYAG	2 cut(s)	625, 915
SfuI	TTCGAA	1 cut(s)	466
SinI	GGWCC	2 cut(s)	85, 1036
SmiMI	CAYNNNNRTG	2 cut(s)	448, 1330
SmlI	CTYRAG	1 cut(s)	1407
SmoI	CTYRAG	1 cut(s)	1407
Sse9I	AATT	5 cut(s)	109, 119, 842, 902, 1200
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	1 cut(s)	732
SspI	AATATT	2 cut(s)	508, 990
SspMI	CTAG	4 cut(s)	165, 261, 750, 1260
StuI	AGGCCT	1 cut(s)	1022
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	4 cut(s)	288, 608, 985, 1252
TaqI	TCGA	3 cut(s)	466, 558, 889
TasI	AATT	5 cut(s)	109, 119, 842, 902, 1200
TauI	GCSGC	1 cut(s)	735
TfiI	GAWTC	6 cut(s)	71, 232, 255, 468, 549, 800
Tru1I	TTAA	5 cut(s)	728, 962, 1065, 1146, 1280
Tru9I	TTAA	5 cut(s)	728, 962, 1065, 1146, 1280
TscAI	CASTG	2 cut(s)	434, 1311
TseI	GCWGC	4 cut(s)	168, 439, 1430, 1464
TspDTI	ATGAA	4 cut(s)	614, 792, 1098, 1098
TspGWI	ACGGA	1 cut(s)	679
TspRI	CASTG	2 cut(s)	434, 1311
VpaK11BI	GGWCC	2 cut(s)	85, 1036
XapI	RAATTY	3 cut(s)	109, 119, 902
XspI	CTAG	4 cut(s)	165, 261, 750, 1260
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.