Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Forward (+)

8132543 .. 8147038

Gene Structure 14496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1082900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGGCTGCTTCCAGTCCAAAAAACCCCGCCTCCCTTCCTCCGACCAAGCCCCTCCTCCACCAGATCCAGCCAATGAAGTGGAATTGGAAGATGAGCAAGCTGTTCCTGTATTCAAAGAGTTTGGACTGGCAGAGCTGAGAACTGCCACCAATGGATTCAACTCTGAACTTATTGTCTCTGAGAGTGGGGAGAAGGCCCCCAATGTTGTTTACAGAGGGAAGTTAAGAAACAATCGATTTGTCGCCATTAAACGCTTTTCTAAGCTGTCTTGGCCCGACCCACATCAGTTTTTGGCAGAGGCGGCTGGGGTTGGCAAGGTTAGGCACAAAAAATTGGTGAATTTGATTGGGTGTTGTGCTGAGGGAGATGAGAGGCTGTTGGTGGCAGAGTACATGCCTAATGATACTCTCTCCAAGCACCTCTTTCACTGGGAGAAACAGCCATTGCCATGGGAAATGCGCGTTAGAATTGCATACTATATTGCACAAGCCCTTGATCATTGCAATAAAGAAAACCGAAAACTGTATCATGACTTAAATGCATACAGAGTTCTTTTTGATGAGGATGGTGACCCGCGGTTATCTAGCTTTGGTCTGATAAAAAATAGCCGAGATGGTAAAAGCTATAGCACTAACTTGGCTTATACTCCACCTGAATTTTTGCGGACAGGTAGGGTCATTCCAGAGAGTGTGATCTATAGTTATGGGACTGTTCTTCTTGACCTTTTGAGTGGAAAACATATCCCTCCAAGCCACGCATTGGATCTCATAAGGGGGAAAAGTTTGTTATTGTTAATGGATTCATCCTTAGAAGGACAATATGCCAATGAAGATGCAACTGAATTGGTTGAATTGGCCTCAAAATGTCTTCAATATGAGGCTAAAGATCGACCTGAGACCACATTTCTTCTGTCAGCAGTATCCCCCCTCCAAAAGCAGACAGAGGTTGCATCACTTGTTTTAATGGGTTTATCAAAAACTCCAGTGGTGATGCCAACCATACTTTCTCCCCTTGGGAAGGCCTGTGTACAGATGGACCTCTCTGCAGTTCATGAGATTTTGCTAAAGACTGGTTACAGAGATGAAGAGGGTGCAGAAAATGAACTGTCATTTCAAGAGTGGACACAACAAGTGCAAGATATGTTGAATACCAAGAAATTTGGGGACATTGCGTTCAGAGACAAGGATTTTAAAAATGCCGTGGAGCACTACTCTAAGTTGGTTTCAATGATGTCTGTTCCTTCGGGTACTATATTTGTGAGGCGAGCGCTCTCCTACTTAATGATTGGGCAACCAGAATTAGCTTTGAGAGATGCCATGCAAGCTCAAGTGTGCTTGCCTGAGTGGGCAACTGCCTTCTACATGCAGGCTCTCGCCCTTTCGAAGCTGGGAATGGAAACTGACGCTCAGGACATGCTAAAGGATGGAGCTTCCTTCGAAGCAAAGAAGCAAAACAGCTGGCGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

490

Amino Acids

54.97

Weight (kDa)

5.9

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	69 - 303	3.8e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	69 - 302	8.7e-26	Protein kinase domain
TPR_BSK1_C	PF25575	340 - 457	2.2e-52	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccII	CGCG	2 cut(s)	462, 577
AciI	CCGC	5 cut(s)	28, 302, 575, 577, 664
AclWI	GGATC	2 cut(s)	59, 771
AcsI	RAATTY	3 cut(s)	340, 656, 1157
AfaI	GTAC	3 cut(s)	392, 1029, 1249
AfeI	AGCGCT	1 cut(s)	1269
AfiI	CCNNNNNNNGG	2 cut(s)	760, 1018
AgsI	TTSAA	7 cut(s)	115, 160, 851, 872, 1115, 1147, 1227
AjuI	GAANNNNNNNTTGG	2 cut(s)	988, 1020
AloI	GAACNNNNNNTCC	2 cut(s)	1157, 1189
Alw21I	GWGCWC	1 cut(s)	1209
Alw26I	GTCTC	3 cut(s)	181, 890, 1173
AlwI	GGATC	2 cut(s)	59, 771
Aor51HI	AGCGCT	1 cut(s)	1269
AoxI	GGCC	4 cut(s)	195, 272, 855, 1020
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	3 cut(s)	340, 656, 1157
AspLEI	GCGC	3 cut(s)	462, 1270, 1464
AspS9I	GGNCC	3 cut(s)	196, 273, 1036
AsuHPI	GGTGA	3 cut(s)	349, 581, 1000
AsuII	TTCGAA	2 cut(s)	1382, 1437
AvaII	GGWCC	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	1209
BbvCI	CCTCAGC	1 cut(s)	360
BccI	CCATC	4 cut(s)	560, 608, 1027, 1418
BceAI	ACGGC	1 cut(s)	1184
BciVI	GTATCC	1 cut(s)	931
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	3 cut(s)	181, 890, 1173
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	3 cut(s)	625, 697, 1044
BfoI	RGCGCY	1 cut(s)	1271
BfuI	GTATCC	1 cut(s)	931
BisI	GCNGC	2 cut(s)	7, 303
BlsI	GCNGC	2 cut(s)	8, 304
Bme18I	GGWCC	1 cut(s)	1036
BmgT120I	GGNCC	3 cut(s)	196, 273, 1036
BmiI	GGNNCC	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	4 cut(s)	823, 959, 981, 1303
BmuI	ACTGGG	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	860
BplI	GAGNNNNNCTC	2 cut(s)	1196, 1228
BpmI	CTGGAG	1 cut(s)	966
Bpu10I	CCTNAGC	2 cut(s)	360, 1407
Bpu14I	TTCGAA	2 cut(s)	1382, 1437
BpuEI	CTTGAG	1 cut(s)	1311
Bsa29I	ATCGAT	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	890
BsaJI	CCNNGG	4 cut(s)	449, 575, 1012, 1200
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	760, 1018
Bse1I	ACTGG	5 cut(s)	13, 132, 434, 983, 1075
Bse3DI	GCAATG	3 cut(s)	443, 499, 1167
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	4 cut(s)	449, 575, 1012, 1200
BseGI	GGATG	3 cut(s)	571, 803, 1429
BseLI	CCNNNNNNNGG	2 cut(s)	760, 1018
BseMI	GCAATG	3 cut(s)	443, 499, 1167
BseMII	CTCAG	6 cut(s)	128, 171, 351, 885, 1332, 1421
BseNI	ACTGG	5 cut(s)	13, 132, 434, 983, 1075
BseRI	GAGGAG	1 cut(s)	45
BseYI	CCCAGC	2 cut(s)	305, 1387
BsgI	GTGCAG	1 cut(s)	1113
Bsh1236I	CGCG	2 cut(s)	462, 577
BshFI	GGCC	4 cut(s)	197, 274, 857, 1022
BshVI	ATCGAT	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	1209
BslFI	GGGAC	2 cut(s)	721, 1178
BslI	CCNNNNNNNGG	2 cut(s)	760, 1018
BsmAI	GTCTC	3 cut(s)	181, 890, 1173
BsmFI	GGGAC	2 cut(s)	721, 1178
BsnI	GGCC	4 cut(s)	197, 274, 857, 1022
Bso31I	GGTCTC	1 cut(s)	890
Bsp119I	TTCGAA	2 cut(s)	1382, 1437
Bsp1286I	GDGCHC	1 cut(s)	1209
Bsp1407I	TGTACA	1 cut(s)	1027
Bsp143I	GATC	5 cut(s)	64, 496, 693, 763, 886
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	5 cut(s)	28, 302, 575, 577, 664
BspANI	GGCC	4 cut(s)	197, 274, 857, 1022
BspCNI	CTCAG	6 cut(s)	129, 172, 352, 886, 1333, 1420
BspDI	ATCGAT	1 cut(s)	235
BspFNI	CGCG	2 cut(s)	462, 577
BspHI	TCATGA	2 cut(s)	529, 1051
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	1048
BspPI	GGATC	2 cut(s)	59, 771
BspT104I	TTCGAA	2 cut(s)	1382, 1437
BspTNI	GGTCTC	1 cut(s)	890
BsrDI	GCAATG	3 cut(s)	443, 499, 1167
BsrGI	TGTACA	1 cut(s)	1027
BsrI	ACTGG	5 cut(s)	13, 132, 434, 983, 1075
BssECI	CCNNGG	4 cut(s)	449, 575, 1012, 1200
BssMI	GATC	5 cut(s)	64, 496, 693, 763, 886
BssT1I	CCWWGG	2 cut(s)	449, 1012
Bst4CI	ACNGT	3 cut(s)	525, 712, 1107
Bst6I	CTCTTC	1 cut(s)	1080
BstAUI	TGTACA	1 cut(s)	1027
BstBI	TTCGAA	2 cut(s)	1382, 1437
BstC8I	GCNNGC	6 cut(s)	99, 1266, 1323, 1337, 1368, 1460
BstDEI	CTNAG	9 cut(s)	137, 180, 261, 360, 808, 894, 1215, 1341, 1407
BstDSI	CCRYGG	3 cut(s)	449, 575, 1200
BstEII	GGTNACC	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	1016
BstF5I	GGATG	3 cut(s)	571, 803, 1429
BstFNI	CGCG	2 cut(s)	462, 577
BstH2I	RGCGCY	1 cut(s)	1271
BstHHI	GCGC	3 cut(s)	462, 1270, 1464
BstKTI	GATC	5 cut(s)	67, 499, 696, 766, 889
BstMAI	GTCTC	3 cut(s)	181, 890, 1173
BstMBI	GATC	5 cut(s)	64, 496, 693, 763, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	271, 302, 1322
BstNSI	RCATGY	3 cut(s)	397, 1366, 1417
BstPI	GGTNACC	1 cut(s)	569
BstSFI	CTRYAG	3 cut(s)	625, 697, 1044
BstUI	CGCG	2 cut(s)	462, 577
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	64, 763
BstXI	CCANNNNNNTGG	2 cut(s)	79, 450
BstYI	RGATCY	2 cut(s)	64, 763
Bsu15I	ATCGAT	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	931
BsuRI	GGCC	4 cut(s)	197, 274, 857, 1022
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	3 cut(s)	449, 575, 1200
BtsCI	GGATG	3 cut(s)	571, 803, 1429
BtsIMutI	CAGTG	2 cut(s)	427, 990
Cac8I	GCNNGC	6 cut(s)	99, 1266, 1323, 1337, 1368, 1460
CciI	TCATGA	2 cut(s)	529, 1051
CfoI	GCGC	3 cut(s)	462, 1270, 1464
Cfr13I	GGNCC	3 cut(s)	196, 273, 1036
Cfr42I	CCGCGG	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	235
CseI	GACGC	1 cut(s)	1412
Csp6I	GTAC	3 cut(s)	391, 1028, 1248
CviAII	CATG	7 cut(s)	394, 450, 530, 1052, 1318, 1363, 1414
CviQI	GTAC	3 cut(s)	391, 1028, 1248
DdeI	CTNAG	9 cut(s)	137, 180, 261, 360, 808, 894, 1215, 1341, 1407
DpnI	GATC	5 cut(s)	66, 498, 695, 765, 888
DpnII	GATC	5 cut(s)	64, 496, 693, 763, 886
DraI	TTTAAA	1 cut(s)	1192
Eam1104I	CTCTTC	1 cut(s)	1080
EarI	CTCTTC	1 cut(s)	1080
Eco130I	CCWWGG	2 cut(s)	449, 1012
Eco147I	AGGCCT	1 cut(s)	1022
Eco31I	GGTCTC	1 cut(s)	890
Eco47I	GGWCC	1 cut(s)	1036
Eco47III	AGCGCT	1 cut(s)	1269
Eco91I	GGTNACC	1 cut(s)	569
EcoNI	CCTNNNNNAGG	1 cut(s)	1016
EcoO109I	RGGNCCY	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	569
EcoT14I	CCWWGG	2 cut(s)	449, 1012
EcoT22I	ATGCAT	1 cut(s)	544
ErhI	CCWWGG	2 cut(s)	449, 1012
FaeI	CATG	7 cut(s)	397, 453, 533, 1055, 1321, 1366, 1417
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	721, 1178
FatI	CATG	7 cut(s)	393, 449, 529, 1051, 1317, 1362, 1413
FauI	CCCGC	2 cut(s)	35, 582
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	7, 303
FokI	GGATG	3 cut(s)	578, 790, 1436
Fsp4HI	GCNGC	2 cut(s)	7, 303
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	3 cut(s)	461, 1269, 1463
GluI	GCNGC	2 cut(s)	7, 303
GsaI	CCCAGC	2 cut(s)	309, 1391
GsuI	CTGGAG	1 cut(s)	966
HaeII	RGCGCY	1 cut(s)	1271
HaeIII	GGCC	4 cut(s)	197, 274, 857, 1022
HgaI	GACGC	1 cut(s)	1412
HhaI	GCGC	3 cut(s)	462, 1270, 1464
Hin1II	CATG	7 cut(s)	397, 453, 533, 1055, 1321, 1366, 1417
Hin6I	GCGC	3 cut(s)	460, 1268, 1462
HinP1I	GCGC	3 cut(s)	460, 1268, 1462
HinfI	GANTC	2 cut(s)	156, 800
HphI	GGTGA	3 cut(s)	349, 581, 1000
Hpy166II	GTNNAC	3 cut(s)	211, 1028, 1122
Hpy188I	TCNGA	5 cut(s)	43, 166, 181, 597, 1178
Hpy188III	TCNNGA	6 cut(s)	530, 683, 719, 1052, 1115, 1409
Hpy8I	GTNNAC	3 cut(s)	211, 1028, 1122
HpyAV	CCTTC	7 cut(s)	45, 187, 806, 1012, 1251, 1366, 1444
HpyCH4III	ACNGT	3 cut(s)	525, 712, 1107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	271, 302, 1322
HpyF3I	CTNAG	9 cut(s)	137, 180, 261, 360, 808, 894, 1215, 1341, 1407
Hsp92II	CATG	7 cut(s)	397, 453, 533, 1055, 1321, 1366, 1417
HspAI	GCGC	3 cut(s)	460, 1268, 1462
Ksp22I	TGATCA	1 cut(s)	496
KspI	CCGCGG	1 cut(s)	578
Kzo9I	GATC	5 cut(s)	64, 496, 693, 763, 886
LmnI	GCTCC	2 cut(s)	1204, 1427
LweI	GCATC	4 cut(s)	823, 959, 981, 1303
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	569, 1073
MalI	GATC	5 cut(s)	66, 498, 695, 765, 888
MboI	GATC	5 cut(s)	64, 496, 693, 763, 886
MboII	GAAGA	6 cut(s)	101, 707, 842, 860, 899, 1097
MflI	RGATCY	2 cut(s)	64, 763
MhlI	GDGCHC	1 cut(s)	1209
MmeI	TCCRAC	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	544
MseI	TTAA	7 cut(s)	224, 249, 536, 794, 962, 1191, 1280
MslI	CAYNNNNRTG	1 cut(s)	448
MspA1I	CMGCKG	2 cut(s)	577, 1458
MvnI	CGCG	2 cut(s)	462, 577
MwoI	GCNNNNNNNGC	3 cut(s)	271, 302, 1322
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	5 cut(s)	64, 496, 693, 763, 886
NlaIII	CATG	7 cut(s)	397, 453, 533, 1055, 1321, 1366, 1417
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	3 cut(s)	397, 1366, 1417
NspV	TTCGAA	2 cut(s)	1382, 1437
PagI	TCATGA	2 cut(s)	529, 1051
PceI	AGGCCT	1 cut(s)	1022
PfeI	GAWTC	2 cut(s)	156, 800
PflMI	CCANNNNNTGG	1 cut(s)	760
PkrI	GCNGC	2 cut(s)	8, 304
PspEI	GGTNACC	1 cut(s)	569
PspFI	CCCAGC	2 cut(s)	305, 1387
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	3 cut(s)	196, 273, 1036
PstI	CTGCAG	1 cut(s)	1048
PsuI	RGATCY	2 cut(s)	64, 763
PvuII	CAGCTG	1 cut(s)	1458
RsaI	GTAC	3 cut(s)	392, 1029, 1249
RsaNI	GTAC	3 cut(s)	391, 1028, 1248
RseI	CAYNNNNRTG	1 cut(s)	448
SacII	CCGCGG	1 cut(s)	578
SaqAI	TTAA	7 cut(s)	224, 249, 536, 794, 962, 1191, 1280
SatI	GCNGC	2 cut(s)	7, 303
Sau3AI	GATC	5 cut(s)	64, 496, 693, 763, 886
Sau96I	GGNCC	3 cut(s)	196, 273, 1036
SduI	GDGCHC	1 cut(s)	1209
SfaNI	GCATC	4 cut(s)	823, 959, 981, 1303
SfcI	CTRYAG	3 cut(s)	625, 697, 1044
Sfr303I	CCGCGG	1 cut(s)	578
SfuI	TTCGAA	2 cut(s)	1382, 1437
SgrBI	CCGCGG	1 cut(s)	578
SinI	GGWCC	1 cut(s)	1036
SmiMI	CAYNNNNRTG	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	1326
SmoI	CTYRAG	1 cut(s)	1326
SseBI	AGGCCT	1 cut(s)	1022
SsiI	CCGC	5 cut(s)	28, 302, 575, 577, 664
SspMI	CTAG	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	1022
StyI	CCWWGG	2 cut(s)	449, 1012
TaaI	ACNGT	3 cut(s)	525, 712, 1107
TaqI	TCGA	4 cut(s)	235, 889, 1382, 1437
TatI	WGTACW	2 cut(s)	390, 1027
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	156, 800
Tru1I	TTAA	7 cut(s)	224, 249, 536, 794, 962, 1191, 1280
Tru9I	TTAA	7 cut(s)	224, 249, 536, 794, 962, 1191, 1280
TscAI	CASTG	2 cut(s)	434, 990
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	6 cut(s)	90, 792, 843, 1040, 1098, 1116
TspRI	CASTG	2 cut(s)	434, 990
Van91I	CCANNNNNTGG	1 cut(s)	760
VpaK11BI	GGWCC	1 cut(s)	1036
XagI	CCTNNNNNAGG	1 cut(s)	1016
XapI	RAATTY	3 cut(s)	340, 656, 1157
XceI	RCATGY	3 cut(s)	397, 1366, 1417
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.