Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002829.1

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4360

Gene Structure 4360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1046 bp

gggataagcagccattgccatgggaaatgcgtgttagagttgcatattatattgcacaggcacttgatcattgtaatacagaaaaccggaagatctatcatgatttgaatgcatatagagttctatttgacgaggatggtgacccttgcttgtctagttttggccttatgaaaaacagtcgagatggaaaaagctacagtactaatttagcttacactccacctgagtttctacggacaggcagggtcatcccagagagtgtaatctacagttatggaactgtcctgttggaccttttgagtggaaagcatattcctccgctccatgcactcgacttgataaggggaaagaatgtattgttgttgatggattcatcattggaaggacagtatgagaatgatgatgctaccaaattggttgaacttgcttccaaatgtcttcagtctgaggctagggatagaggagatattaagtgtcttcttacagctgttgcaccacttcaaaagcagaaagaggtggcatctcatgttttaatgggcctcccaaaaaacaaaaatacagttgtggtgccaaccatgctttctcctcttgggaaggcttgtgcaaggatggatcttactgctgtgcatgatattttgctaaaaacaggttatagagacgaagaaggtgcagaaaatgagctttcatttcaagaatggacacagcaagtccaagacatgttgaacacaaagaaatttggagatattgcatttagagacaaggatttcaagaatgcaatcgagtattattccaagttaatcgttatgatgtctgttccttctgcgactgtgtttgcgagaagagccttttcctacttgatgaatggccaagcagaacttgctttgagagatgctatgcaggcacaggtttgcataccagagtggccaactgcattctacttgcaggcccttgcactctcaaagctcggaatggagactgatgctcaggacatgcttaatgacggagcagcctttgaagcgaagagacacagcatctggcggggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.08

Weight (kDa)

5.87

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	567
AccBSI	CCGCTC	1 cut(s)	321
AciI	CCGC	2 cut(s)	319, 1038
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	2 cut(s)	864, 922
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	424
AfaI	GTAC	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	7 cut(s)	108, 421, 502, 691, 723, 768, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	5 cut(s)	194, 211, 487, 681, 963
AluI	AGCT	5 cut(s)	194, 211, 487, 681, 963
Alw26I	GTCTC	4 cut(s)	650, 749, 967, 1017
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	1034
AoxI	GGCC	5 cut(s)	162, 537, 864, 922, 944
ApeKI	GCWGC	2 cut(s)	9, 1006
ApoI	RAATTY	1 cut(s)	733
AspS9I	GGNCC	3 cut(s)	291, 537, 945
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	291
BalI	TGGCCA	2 cut(s)	866, 924
BanI	GGYRCC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	430, 469
BbvI	GCAGC	2 cut(s)	21, 1018
BccI	CCATC	4 cut(s)	130, 178, 360, 603
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	4 cut(s)	650, 749, 967, 1017
BfaI	CTAG	2 cut(s)	155, 452
BfmI	CTRYAG	2 cut(s)	195, 267
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	2 cut(s)	10, 1007
BlsI	GCNGC	2 cut(s)	11, 1008
BmcAI	AGTACT	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	3 cut(s)	291, 537, 945
BmiI	GGNNCC	1 cut(s)	569
BmsI	GCATC	5 cut(s)	393, 529, 879, 969, 1040
BpiI	GAAGAC	2 cut(s)	430, 469
Bpu10I	CCTNAGC	1 cut(s)	983
BsaJI	CCNNGG	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	3 cut(s)	141, 248, 614
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	3 cut(s)	215, 437, 997
BseRI	GAGGAG	2 cut(s)	476, 575
BseXI	GCAGC	2 cut(s)	21, 1018
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	5 cut(s)	164, 539, 866, 924, 946
BshNI	GGYRCC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	4 cut(s)	650, 749, 967, 1017
BsmBI	CGTCTC	1 cut(s)	650
BsmI	GAATGC	3 cut(s)	114, 777, 931
BsnI	GGCC	5 cut(s)	164, 539, 866, 924, 946
Bsp143I	GATC	3 cut(s)	66, 92, 612
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	2 cut(s)	319, 1038
BspANI	GGCC	5 cut(s)	164, 539, 866, 924, 946
BspCNI	CTCAG	3 cut(s)	216, 438, 996
BspHI	TCATGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	620
BspQI	GCTCTTC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	567
BsrBI	CCGCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	66, 92, 612
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	7 cut(s)	178, 199, 271, 282, 389, 561, 828
Bst6I	CTCTTC	2 cut(s)	834, 1015
BstAPI	GCANNNNNTGC	2 cut(s)	15, 877
BstC8I	GCNNGC	2 cut(s)	899, 944
BstDEI	CTNAG	3 cut(s)	224, 446, 983
BstDSI	CCRYGG	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	139
BstF5I	GGATG	3 cut(s)	141, 248, 614
BstKTI	GATC	3 cut(s)	69, 95, 615
BstMAI	GTCTC	4 cut(s)	650, 749, 967, 1017
BstMBI	GATC	3 cut(s)	66, 92, 612
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 576, 841, 877, 898, 1015
BstNSI	RCATGY	2 cut(s)	720, 993
BstPI	GGTNACC	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	195, 267
BstV1I	GCAGC	2 cut(s)	21, 1018
BstV2I	GAAGAC	2 cut(s)	430, 469
BstX2I	RGATCY	2 cut(s)	92, 612
BstXI	CCANNNNNNTGG	1 cut(s)	20
BstYI	RGATCY	2 cut(s)	92, 612
BsuRI	GGCC	5 cut(s)	164, 539, 866, 924, 946
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	141, 248, 614
Cac8I	GCNNGC	2 cut(s)	899, 944
CaiI	CAGNNNCTG	1 cut(s)	1034
CciI	TCATGA	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	291, 537, 945
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	8 cut(s)	20, 100, 325, 526, 576, 628, 717, 990
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	3 cut(s)	224, 446, 983
DpnI	GATC	3 cut(s)	68, 94, 614
DpnII	GATC	3 cut(s)	66, 92, 612
EaeI	YGGCCR	2 cut(s)	864, 922
Eam1104I	CTCTTC	2 cut(s)	834, 1015
EarI	CTCTTC	2 cut(s)	834, 1015
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	424
Eco91I	GGTNACC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	945
EcoO65I	GGTNACC	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	8 cut(s)	23, 103, 328, 529, 579, 631, 720, 993
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FatI	CATG	8 cut(s)	19, 99, 324, 525, 575, 627, 716, 989
FauI	CCCGC	1 cut(s)	1031
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	10, 1007
FokI	GGATG	3 cut(s)	148, 235, 621
Fsp4HI	GCNGC	2 cut(s)	10, 1007
FspBI	CTAG	2 cut(s)	155, 452
GluI	GCNGC	2 cut(s)	10, 1007
HaeIII	GGCC	5 cut(s)	164, 539, 866, 924, 946
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	8 cut(s)	23, 103, 328, 529, 579, 631, 720, 993
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	447, 967
Hpy188III	TCNNGA	5 cut(s)	100, 181, 691, 768, 985
HpyAV	CCTTC	4 cut(s)	376, 588, 658, 827
HpyCH4III	ACNGT	7 cut(s)	178, 199, 271, 282, 389, 561, 828
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 576, 841, 877, 898, 1015
HpyF3I	CTNAG	3 cut(s)	224, 446, 983
Hsp92II	CATG	8 cut(s)	23, 103, 328, 529, 579, 631, 720, 993
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	66, 92, 612
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	2 cut(s)	326, 1003
Lsp1109I	GCAGC	2 cut(s)	21, 1018
LweI	GCATC	5 cut(s)	393, 529, 879, 969, 1040
MaeI	CTAG	2 cut(s)	155, 452
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	68, 94, 614
MbiI	CCGCTC	1 cut(s)	321
MboI	GATC	3 cut(s)	66, 92, 612
MboII	GAAGA	6 cut(s)	102, 430, 469, 673, 851, 1032
MflI	RGATCY	2 cut(s)	92, 612
MlsI	TGGCCA	2 cut(s)	866, 924
MluCI	AATT	3 cut(s)	204, 412, 733
MluNI	TGGCCA	2 cut(s)	866, 924
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	7 cut(s)	126, 326, 441, 454, 507, 550, 596
Mox20I	TGGCCA	2 cut(s)	866, 924
Mph1103I	ATGCAT	1 cut(s)	114
MscI	TGGCCA	2 cut(s)	866, 924
MseI	TTAA	5 cut(s)	470, 532, 796, 995, 1044
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	2 cut(s)	866, 924
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	1 cut(s)	87
Mva1269I	GAATGC	3 cut(s)	114, 777, 931
MwoI	GCNNNNNNNGC	6 cut(s)	15, 576, 841, 877, 898, 1015
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	3 cut(s)	66, 92, 612
NlaIII	CATG	8 cut(s)	23, 103, 328, 529, 579, 631, 720, 993
NlaIV	GGNNCC	1 cut(s)	569
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	114
NspI	RCATGY	2 cut(s)	720, 993
PagI	TCATGA	1 cut(s)	99
PciI	ACATGT	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	834
PctI	GAATGC	3 cut(s)	114, 777, 931
PfeI	GAWTC	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	11, 1008
PscI	ACATGT	1 cut(s)	716
PspEI	GGTNACC	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	569
PspPI	GGNCC	3 cut(s)	291, 537, 945
PstNI	CAGNNNCTG	1 cut(s)	1034
PsuI	RGATCY	2 cut(s)	92, 612
PvuII	CAGCTG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	5 cut(s)	470, 532, 796, 995, 1044
SatI	GCNGC	2 cut(s)	10, 1007
Sau3AI	GATC	3 cut(s)	66, 92, 612
Sau96I	GGNCC	3 cut(s)	291, 537, 945
ScaI	AGTACT	1 cut(s)	201
SfaNI	GCATC	5 cut(s)	393, 529, 879, 969, 1040
SfcI	CTRYAG	2 cut(s)	195, 267
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	3 cut(s)	204, 412, 733
SsiI	CCGC	2 cut(s)	319, 1038
SspMI	CTAG	2 cut(s)	155, 452
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	7 cut(s)	178, 199, 271, 282, 389, 561, 828
TaqI	TCGA	3 cut(s)	180, 332, 779
TasI	AATT	3 cut(s)	204, 412, 733
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	5 cut(s)	470, 532, 796, 995, 1044
Tru9I	TTAA	5 cut(s)	470, 532, 796, 995, 1044
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	9, 1006
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	4 cut(s)	184, 362, 674, 874
TspGWI	ACGGA	2 cut(s)	249, 1016
VpaK11BI	GGWCC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	2 cut(s)	720, 993
XspI	CTAG	2 cut(s)	155, 452
ZrmI	AGTACT	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.