Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Forward (+)

23832782 .. 23838883

Gene Structure 6102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG242700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTAATATTGGATAGTTTGGCATTGAGTCTGATGTTGAGGCCTATGATTGGGCAGGCTGAGGCTGCGGGAGTGGGGAAGTTGAGGCACAAGAGATTAGTGAATCTGATTGGTTGCTGTGCCGAGGGAGATGAACGCCTCTTGGTGGCTCAGTACATGTCCAATGATACTCTTTCCAAGCATCTCTTCCATTGGGATAAGCAGCCATTGCCATGGGAAATGCGTGTTAGAGTTGCATATTATATTGCACAGGCACTTGATCATTGTAATACAGAAAACCGGAAGATCTATCATGATTTGAATGCATATAGAGTTCTATTTGACGAGGATGGTGACCCTCGCTTGTCTAGTTTTGGCCTTATGAAAAATAGTCGAGATGGAAAAAGCTACAGTACTAATTTAGCTTACACTCCACCTGAGTTTCTACGGACAGGCAGGGTCATCCCAGAGAGTGTAATCTACAGTTATGGAACTGTCCTGTTGGACCTTTTGAGTGGAAAGCATATTCCTCCGCTCCATGCACTCGACTTGATAAGGGGAAAGAATGTATTGTTGTTGATGGATTCATCATTGGAAGGACAGTATGAGAATGATGATGCTACCAAATTGGTTGAACTTGCTTCCAAATGTCTTCAGTCTGAGGCTAGGGATAGAGGAGATATTAAGTGTCTTCTTACAGCTGTTGCACCACTTCAAAAGCAAAAAGAGGTGGCATCTCATGTTTTAATGGGCCTCCCAAAAAACAAAAATACAGTTGTGGTGCCAACCATGCTTTCTCCTCTTGGGAAGGCTTGTGCGAGGATGGATCTTACTGCTGTTCATGATATTTTGCTAAAAACTGGTTATAGAGACGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAGCAAGTCCAAGACATGTTGAACACTAAGAAATTTGGAGATATTGCATTTAGAGACAAGGATTTCAAGAATGCAATTGAGTATTATTCCAAGTTAATCGTTATGATGTCCGTTCCTTCTGCGACTGTGTTTGCAAGAAGAGCCTTCTCCTACTTGATGAATGGCCAAGCAGAACTTGCTTTGAGAGATGCTATGCAGGCACAGGTTTGCATACCAGAGTGGCCAACTGCATTCTACTTGCAGGCCCTTGCACTCTCAAAGCTCGGAATGGAGACTGATGCTCAGGACATGCTTAATGACGGAGCAGCCTTTGAAGCGAAGAGACACAGCATCTGGCGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

412

Amino Acids

46.35

Weight (kDa)

6.38

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 222	2.2e-19	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	21 - 225	3.6e-21	Protein tyrosine and serine/threonine kinase
TPR_BSK1_C	PF25575	263 - 380	2.3e-55	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	760
AccBSI	CCGCTC	1 cut(s)	514
AciI	CCGC	3 cut(s)	68, 512, 1231
AclWI	GGATC	1 cut(s)	813
AcoI	YGGCCR	2 cut(s)	1057, 1115
AcsI	RAATTY	1 cut(s)	926
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	2 cut(s)	155, 394
AfiI	CCNNNNNNNGG	2 cut(s)	50, 145
AflIII	ACRYGT	2 cut(s)	156, 909
AgsI	TTSAA	7 cut(s)	301, 614, 695, 884, 916, 961, 1208
AjuI	GAANNNNNNNTTGG	4 cut(s)	170, 202, 757, 789
AluBI	AGCT	5 cut(s)	387, 404, 680, 874, 1156
AluI	AGCT	5 cut(s)	387, 404, 680, 874, 1156
Alw26I	GTCTC	4 cut(s)	843, 942, 1160, 1210
AlwI	GGATC	1 cut(s)	813
AlwNI	CAGNNNCTG	1 cut(s)	1227
AoxI	GGCC	6 cut(s)	41, 355, 730, 1057, 1115, 1137
ApeKI	GCWGC	3 cut(s)	65, 202, 1199
ApoI	RAATTY	1 cut(s)	926
AspS9I	GGNCC	3 cut(s)	484, 730, 1138
AsuHPI	GGTGA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	484
BalI	TGGCCA	2 cut(s)	1059, 1117
BanI	GGYRCC	1 cut(s)	760
BbsI	GAAGAC	2 cut(s)	623, 662
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	52, 214, 1211
BccI	CCATC	4 cut(s)	323, 371, 553, 796
BcgI	CGANNNNNNTGC	2 cut(s)	842, 876
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	4 cut(s)	843, 942, 1160, 1210
BfaI	CTAG	2 cut(s)	348, 645
BfmI	CTRYAG	2 cut(s)	388, 460
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	3 cut(s)	66, 203, 1200
BlsI	GCNGC	3 cut(s)	67, 204, 1201
BmcAI	AGTACT	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	484
BmgT120I	GGNCC	3 cut(s)	484, 730, 1138
BmiI	GGNNCC	1 cut(s)	762
BmsI	GCATC	6 cut(s)	190, 586, 722, 1072, 1162, 1233
BpiI	GAAGAC	2 cut(s)	623, 662
Bpu10I	CCTNAGC	2 cut(s)	60, 1176
BsaJI	CCNNGG	2 cut(s)	123, 212
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 145
Bse1I	ACTGG	1 cut(s)	844
Bse3DI	GCAATG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	123, 212
BseGI	GGATG	3 cut(s)	334, 441, 807
BseLI	CCNNNNNNNGG	2 cut(s)	50, 145
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	5 cut(s)	51, 164, 408, 630, 1190
BseNI	ACTGG	1 cut(s)	844
BseRI	GAGGAG	2 cut(s)	669, 768
BseXI	GCAGC	3 cut(s)	52, 214, 1211
BsgI	GTGCAG	1 cut(s)	882
BshFI	GGCC	6 cut(s)	43, 357, 732, 1059, 1117, 1139
BshNI	GGYRCC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	50, 145
BsmAI	GTCTC	4 cut(s)	843, 942, 1160, 1210
BsmBI	CGTCTC	1 cut(s)	843
BsmI	GAATGC	3 cut(s)	307, 970, 1124
BsnI	GGCC	6 cut(s)	43, 357, 732, 1059, 1117, 1139
Bsp143I	GATC	3 cut(s)	259, 285, 805
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	3 cut(s)	68, 512, 1231
BspANI	GGCC	6 cut(s)	43, 357, 732, 1059, 1117, 1139
BspCNI	CTCAG	5 cut(s)	52, 163, 409, 631, 1189
BspHI	TCATGA	2 cut(s)	292, 820
BspLI	GGNNCC	1 cut(s)	762
BspPI	GGATC	1 cut(s)	813
BspQI	GCTCTTC	1 cut(s)	1027
BspT107I	GGYRCC	1 cut(s)	760
BsrBI	CCGCTC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	844
BssECI	CCNNGG	2 cut(s)	123, 212
BssMI	GATC	3 cut(s)	259, 285, 805
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	6 cut(s)	392, 464, 475, 582, 754, 1021
Bst6I	CTCTTC	3 cut(s)	191, 1027, 1208
BstAPI	GCANNNNNTGC	2 cut(s)	208, 1070
BstC8I	GCNNGC	3 cut(s)	57, 1092, 1137
BstDEI	CTNAG	6 cut(s)	60, 150, 417, 639, 921, 1176
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	3 cut(s)	334, 441, 807
BstKTI	GATC	3 cut(s)	262, 288, 808
BstMAI	GTCTC	4 cut(s)	843, 942, 1160, 1210
BstMBI	GATC	3 cut(s)	259, 285, 805
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 208, 769, 1034, 1070, 1091, 1208
BstNSI	RCATGY	3 cut(s)	160, 913, 1186
BstPI	GGTNACC	1 cut(s)	332
BstSFI	CTRYAG	2 cut(s)	388, 460
BstV1I	GCAGC	3 cut(s)	52, 214, 1211
BstV2I	GAAGAC	2 cut(s)	623, 662
BstX2I	RGATCY	2 cut(s)	285, 805
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	2 cut(s)	285, 805
BsuRI	GGCC	6 cut(s)	43, 357, 732, 1059, 1117, 1139
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	334, 441, 807
Cac8I	GCNNGC	3 cut(s)	57, 1092, 1137
CaiI	CAGNNNCTG	1 cut(s)	1227
CciI	TCATGA	2 cut(s)	292, 820
Cfr13I	GGNCC	3 cut(s)	484, 730, 1138
Csp6I	GTAC	2 cut(s)	154, 393
CviAII	CATG	9 cut(s)	157, 213, 293, 518, 719, 769, 821, 910, 1183
CviQI	GTAC	2 cut(s)	154, 393
DdeI	CTNAG	6 cut(s)	60, 150, 417, 639, 921, 1176
DpnI	GATC	3 cut(s)	261, 287, 807
DpnII	GATC	3 cut(s)	259, 285, 805
EaeI	YGGCCR	2 cut(s)	1057, 1115
Eam1104I	CTCTTC	3 cut(s)	191, 1027, 1208
EarI	CTCTTC	3 cut(s)	191, 1027, 1208
Eco130I	CCWWGG	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	617
Eco91I	GGTNACC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	1138
EcoO65I	GGTNACC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	843
FaeI	CATG	9 cut(s)	160, 216, 296, 521, 722, 772, 824, 913, 1186
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 1053, 1085
FatI	CATG	9 cut(s)	156, 212, 292, 517, 718, 768, 820, 909, 1182
FauI	CCCGC	2 cut(s)	61, 1224
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	66, 203, 1200
FokI	GGATG	3 cut(s)	341, 428, 814
Fsp4HI	GCNGC	3 cut(s)	66, 203, 1200
FspBI	CTAG	2 cut(s)	348, 645
GluI	GCNGC	3 cut(s)	66, 203, 1200
HaeIII	GGCC	6 cut(s)	43, 357, 732, 1059, 1117, 1139
HapII	CCGG	1 cut(s)	280
Hin1II	CATG	9 cut(s)	160, 216, 296, 521, 722, 772, 824, 913, 1186
HinfI	GANTC	3 cut(s)	28, 103, 563
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	344
Hpy188I	TCNGA	4 cut(s)	33, 108, 640, 1160
Hpy188III	TCNNGA	6 cut(s)	293, 374, 821, 884, 961, 1178
HpyAV	CCTTC	5 cut(s)	569, 781, 851, 1020, 1048
HpyCH4III	ACNGT	6 cut(s)	392, 464, 475, 582, 754, 1021
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 208, 769, 1034, 1070, 1091, 1208
HpyF3I	CTNAG	6 cut(s)	60, 150, 417, 639, 921, 1176
Hsp92II	CATG	9 cut(s)	160, 216, 296, 521, 722, 772, 824, 913, 1186
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 285, 805
LguI	GCTCTTC	1 cut(s)	1027
LmnI	GCTCC	2 cut(s)	519, 1196
Lsp1109I	GCAGC	3 cut(s)	52, 214, 1211
LweI	GCATC	6 cut(s)	190, 586, 722, 1072, 1162, 1233
MaeI	CTAG	2 cut(s)	348, 645
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	3 cut(s)	261, 287, 807
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	3 cut(s)	259, 285, 805
MboII	GAAGA	7 cut(s)	178, 295, 623, 662, 866, 1044, 1225
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	2 cut(s)	285, 805
MlsI	TGGCCA	2 cut(s)	1059, 1117
MluCI	AATT	4 cut(s)	397, 605, 926, 969
MluNI	TGGCCA	2 cut(s)	1059, 1117
MlyI	GAGTC	1 cut(s)	37
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	2 cut(s)	1059, 1117
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	2 cut(s)	1059, 1117
MseI	TTAA	5 cut(s)	663, 725, 989, 1188, 1237
MslI	CAYNNNNRTG	1 cut(s)	211
Msp20I	TGGCCA	2 cut(s)	1059, 1117
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	969
Mva1269I	GAATGC	3 cut(s)	307, 970, 1124
MwoI	GCNNNNNNNGC	7 cut(s)	65, 208, 769, 1034, 1070, 1091, 1208
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	3 cut(s)	259, 285, 805
NlaIII	CATG	9 cut(s)	160, 216, 296, 521, 722, 772, 824, 913, 1186
NlaIV	GGNNCC	1 cut(s)	762
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	3 cut(s)	160, 913, 1186
PagI	TCATGA	2 cut(s)	292, 820
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	2 cut(s)	156, 909
PciSI	GCTCTTC	1 cut(s)	1027
PctI	GAATGC	3 cut(s)	307, 970, 1124
PfeI	GAWTC	2 cut(s)	103, 563
PkrI	GCNGC	3 cut(s)	67, 204, 1201
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PscI	ACATGT	2 cut(s)	156, 909
PspEI	GGTNACC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	762
PspPI	GGNCC	3 cut(s)	484, 730, 1138
PstNI	CAGNNNCTG	1 cut(s)	1227
PsuI	RGATCY	2 cut(s)	285, 805
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	2 cut(s)	155, 394
RsaNI	GTAC	2 cut(s)	154, 393
RseI	CAYNNNNRTG	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	1027
SaqAI	TTAA	5 cut(s)	663, 725, 989, 1188, 1237
SatI	GCNGC	3 cut(s)	66, 203, 1200
Sau3AI	GATC	3 cut(s)	259, 285, 805
Sau96I	GGNCC	3 cut(s)	484, 730, 1138
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	1 cut(s)	37
SfaNI	GCATC	6 cut(s)	190, 586, 722, 1072, 1162, 1233
SfcI	CTRYAG	2 cut(s)	388, 460
SinI	GGWCC	1 cut(s)	484
SmiMI	CAYNNNNRTG	1 cut(s)	211
Sse9I	AATT	4 cut(s)	397, 605, 926, 969
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	68, 512, 1231
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	2 cut(s)	348, 645
StuI	AGGCCT	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	6 cut(s)	392, 464, 475, 582, 754, 1021
TaqI	TCGA	2 cut(s)	373, 525
TasI	AATT	4 cut(s)	397, 605, 926, 969
TatI	WGTACW	2 cut(s)	153, 392
TfiI	GAWTC	2 cut(s)	103, 563
Tru1I	TTAA	5 cut(s)	663, 725, 989, 1188, 1237
Tru9I	TTAA	5 cut(s)	663, 725, 989, 1188, 1237
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	65, 202, 1199
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	6 cut(s)	147, 377, 555, 809, 867, 1067
TspGWI	ACGGA	3 cut(s)	442, 994, 1209
VpaK11BI	GGWCC	1 cut(s)	484
XapI	RAATTY	1 cut(s)	926
XceI	RCATGY	3 cut(s)	160, 913, 1186
XspI	CTAG	2 cut(s)	348, 645
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.