Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Forward (+)

25088855 .. 25094988

Gene Structure 6134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGTTGCTTTCACTCCAAAACCGCCCACCTCCACTCCCCCGACGACCCGTCTCCAGTCCCCGAAGCTCAGAAACCCGACCCGGCTGATGGGGATCAAGCTGAGGTTGGGGACCAAGTGCCGGCGTTCAAAGAGTACAGTCTGAACGAGCTGCGGAAGGCGACGAATGGGTTCAGCTCTGAATTTATAGTTTCTGAGAGCGGCGAAAAAGCCCCAAATGTAGTTTACAAAGGGAAGCTTGAAAGCAATCGCCTTGTTGCTGTCAAACGCTTCTCCAAGCAGTCTTGGCCGGACGCCCAGCAGTTTGTGGCTGAGGCTGCGGGAGTGGGGAAGTTGAGGCACAAGAGATTAGTGAATCTGATTGGTTGCTGTGCCGAGGGAGATGAACGCCTCTTGGTGGCTCAGTACATGTCCAATGATACTCTTTCCAAGCATCTCTTCCATTGGGATAAGCAGCCATTGCCATGGGAAATGCGTGTTAGAGTTGCATATTATATTGCACAGGCACTTGATCATTGTAATACAGAAAACCGGAAGATCTATCATGATTTGAATGCATATAGAGTTCTATTCGACGAGGATGGTGACCCTCGCTTGTCTAGTTTTGGCCTTATGAAAAACAGTCGAGATGGAAAAAGCTACAGTACTAATTTAGCTTACACTCCACCTGAGTTTCTACGGACAGGCAGGGTCATCCCAGAGAGTGTAATCTACAGTTATGGGACTGTCCTGTTGGACCTTTTGAGTGGAAAGCATATTCCTCCGCTCCATGCACTCGACTTGATAAGGGGAAAGAATGTATTGTTGTTGATGGATTCATCATTGGAAGGACAGTATGAGAATGATGATGCTACCAAATTGGTTGAACTTGCTTCCAAATGTCTTCAGTCTGAGGCTAGGGATAGAGGAGATATTAAGTGTCTTCTTACAGCTGTTGCACCACTTCAAAAGCAGAAAGAGGTGGCATCTCATGTTTTAATGGGCCTCCCAAAAAACAAAAATACAGTTGTGGTGCCAACCATGCTTTCTCCTCTTGGGAAGGCTTGTGCAAGGATGGATCTTACTGCTGTTCATGATATTTTGCTAAAAACTGGTTATAGAGACGAAGAAGGTGCAGAAAATGAGGTACATTTTATTGTCTGTTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

383

Amino Acids

42.71

Weight (kDa)

6.24

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	74 - 309	1.5e-26	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	74 - 306	1.2e-24	Protein kinase domain
TPR_BSK1_C	PF25575	347 - 378	8.4e-08	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1012
AccBSI	CCGCTC	2 cut(s)	201, 766
AciI	CCGC	5 cut(s)	24, 154, 201, 320, 764
AclWI	GGATC	2 cut(s)	102, 1065
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	869
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	4 cut(s)	137, 407, 646, 1128
AfiI	CCNNNNNNNGG	3 cut(s)	89, 121, 397
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	130, 242, 553, 866, 947
AhdI	GACNNNNNGTC	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	4 cut(s)	422, 454, 1009, 1041
AluBI	AGCT	8 cut(s)	68, 101, 151, 177, 238, 639, 656, 932
AluI	AGCT	8 cut(s)	68, 101, 151, 177, 238, 639, 656, 932
Alw26I	GTCTC	2 cut(s)	57, 1095
AlwI	GGATC	2 cut(s)	102, 1065
AoxI	GGCC	3 cut(s)	287, 607, 982
ApeKI	GCWGC	3 cut(s)	151, 317, 454
ApoI	RAATTY	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	112, 736, 982
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	112, 736
BanI	GGYRCC	1 cut(s)	1012
BbsI	GAAGAC	2 cut(s)	875, 914
BbvCI	CCTCAGC	2 cut(s)	102, 312
BbvI	GCAGC	3 cut(s)	138, 304, 466
BccI	CCATC	5 cut(s)	83, 575, 623, 805, 1048
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	57, 1095
BfaI	CTAG	2 cut(s)	600, 897
BfmI	CTRYAG	2 cut(s)	640, 712
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	4 cut(s)	152, 202, 318, 455
BlsI	GCNGC	4 cut(s)	153, 203, 319, 456
BmcAI	AGTACT	1 cut(s)	646
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	2 cut(s)	112, 736
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	112, 736, 982
BmiI	GGNNCC	2 cut(s)	113, 1014
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	3 cut(s)	442, 838, 974
BpiI	GAAGAC	2 cut(s)	875, 914
BpmI	CTGGAG	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	102, 312
BpuMI	CCSGG	1 cut(s)	83
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	375, 464
BsaWI	WCCGGW	1 cut(s)	531
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 121, 397
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	56, 1096
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	375, 464
BseGI	GGATG	3 cut(s)	586, 693, 1059
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	3 cut(s)	89, 121, 397
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	7 cut(s)	83, 93, 186, 303, 416, 660, 882
BseNI	ACTGG	2 cut(s)	56, 1096
BseRI	GAGGAG	2 cut(s)	921, 1020
BseXI	GCAGC	3 cut(s)	138, 304, 466
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	1134
BshFI	GGCC	3 cut(s)	289, 609, 984
BshNI	GGYRCC	1 cut(s)	1012
BsiSI	CCGG	4 cut(s)	83, 122, 290, 532
BslFI	GGGAC	3 cut(s)	44, 125, 736
BslI	CCNNNNNNNGG	3 cut(s)	89, 121, 397
BsmAI	GTCTC	2 cut(s)	57, 1095
BsmBI	CGTCTC	2 cut(s)	57, 1095
BsmFI	GGGAC	3 cut(s)	44, 125, 736
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	3 cut(s)	289, 609, 984
Bsp143I	GATC	4 cut(s)	94, 511, 537, 1057
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	5 cut(s)	24, 154, 201, 320, 764
BspANI	GGCC	3 cut(s)	289, 609, 984
BspCNI	CTCAG	7 cut(s)	82, 94, 187, 304, 415, 661, 883
BspHI	TCATGA	2 cut(s)	544, 1072
BspLI	GGNNCC	2 cut(s)	113, 1014
BspPI	GGATC	2 cut(s)	102, 1065
BspT107I	GGYRCC	1 cut(s)	1012
BsrBI	CCGCTC	2 cut(s)	201, 766
BsrDI	GCAATG	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	56, 1096
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	375, 464
BssMI	GATC	4 cut(s)	94, 511, 537, 1057
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	464
Bst4CI	ACNGT	7 cut(s)	140, 623, 644, 716, 727, 834, 1006
Bst6I	CTCTTC	1 cut(s)	443
BstACI	GRCGYC	1 cut(s)	294
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	7 cut(s)	69, 102, 195, 312, 402, 669, 891
BstDSI	CCRYGG	1 cut(s)	464
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	3 cut(s)	586, 693, 1059
BstKTI	GATC	4 cut(s)	97, 514, 540, 1060
BstMAI	GTCTC	2 cut(s)	57, 1095
BstMBI	GATC	4 cut(s)	94, 511, 537, 1057
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 317, 460, 1021
BstNSI	RCATGY	1 cut(s)	412
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	2 cut(s)	640, 712
BstV1I	GCAGC	3 cut(s)	138, 304, 466
BstV2I	GAAGAC	2 cut(s)	875, 914
BstX2I	RGATCY	2 cut(s)	537, 1057
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	2 cut(s)	537, 1057
BsuRI	GGCC	3 cut(s)	289, 609, 984
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	3 cut(s)	586, 693, 1059
Cac8I	GCNNGC	1 cut(s)	123
CciI	TCATGA	2 cut(s)	544, 1072
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	112, 736, 982
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	136, 406, 645, 1127
CviAII	CATG	7 cut(s)	409, 465, 545, 770, 971, 1021, 1073
CviQI	GTAC	4 cut(s)	136, 406, 645, 1127
DdeI	CTNAG	7 cut(s)	69, 102, 195, 312, 402, 669, 891
DpnI	GATC	4 cut(s)	96, 513, 539, 1059
DpnII	GATC	4 cut(s)	94, 511, 537, 1057
DriI	GACNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	464
Eco47I	GGWCC	2 cut(s)	112, 736
Eco57I	CTGAAG	1 cut(s)	869
Eco91I	GGTNACC	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	584
EcoT14I	CCWWGG	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	464
Esp3I	CGTCTC	2 cut(s)	57, 1095
FaeI	CATG	7 cut(s)	412, 468, 548, 773, 974, 1024, 1076
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 422, 454
FaqI	GGGAC	3 cut(s)	44, 125, 736
FatI	CATG	7 cut(s)	408, 464, 544, 769, 970, 1020, 1072
FauI	CCCGC	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	4 cut(s)	152, 202, 318, 455
FokI	GGATG	3 cut(s)	593, 680, 1066
Fsp4HI	GCNGC	4 cut(s)	152, 202, 318, 455
FspBI	CTAG	2 cut(s)	600, 897
GluI	GCNGC	4 cut(s)	152, 202, 318, 455
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	289, 609, 984
HapII	CCGG	4 cut(s)	83, 122, 290, 532
HgaI	GACGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	7 cut(s)	412, 468, 548, 773, 974, 1024, 1076
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	355, 815
HpaII	CCGG	4 cut(s)	83, 122, 290, 532
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	6 cut(s)	72, 144, 181, 196, 360, 892
Hpy188III	TCNNGA	3 cut(s)	545, 626, 1073
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	3 cut(s)	47, 166, 578
HpyAV	CCTTC	4 cut(s)	151, 821, 1033, 1103
HpyCH4III	ACNGT	7 cut(s)	140, 623, 644, 716, 727, 834, 1006
HpyCH4V	TGCA	7 cut(s)	488, 500, 557, 773, 938, 1049, 1115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 317, 460, 1021
HpyF3I	CTNAG	7 cut(s)	69, 102, 195, 312, 402, 669, 891
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	7 cut(s)	412, 468, 548, 773, 974, 1024, 1076
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	94, 511, 537, 1057
LmnI	GCTCC	1 cut(s)	771
Lsp1109I	GCAGC	3 cut(s)	138, 304, 466
LweI	GCATC	3 cut(s)	442, 838, 974
MaeI	CTAG	2 cut(s)	600, 897
MaeIII	GTNAC	1 cut(s)	584
MalI	GATC	4 cut(s)	96, 513, 539, 1059
MbiI	CCGCTC	2 cut(s)	201, 766
MboI	GATC	4 cut(s)	94, 511, 537, 1057
MboII	GAAGA	5 cut(s)	430, 547, 875, 914, 1118
MflI	RGATCY	2 cut(s)	537, 1057
MluCI	AATT	3 cut(s)	182, 649, 857
MmeI	TCCRAC	1 cut(s)	714
Mph1103I	ATGCAT	1 cut(s)	559
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	2 cut(s)	915, 977
MslI	CAYNNNNRTG	1 cut(s)	463
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	4 cut(s)	83, 122, 290, 532
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	559
MwoI	GCNNNNNNNGC	4 cut(s)	286, 317, 460, 1021
NaeI	GCCGGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	4 cut(s)	94, 511, 537, 1057
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	7 cut(s)	412, 468, 548, 773, 974, 1024, 1076
NlaIV	GGNNCC	2 cut(s)	113, 1014
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	584
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	1 cut(s)	412
PagI	TCATGA	2 cut(s)	544, 1072
PciI	ACATGT	1 cut(s)	408
PctI	GAATGC	1 cut(s)	559
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	355, 815
PkrI	GCNGC	4 cut(s)	153, 203, 319, 456
PscI	ACATGT	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	584
PspFI	CCCAGC	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	113, 1014
PspPI	GGNCC	3 cut(s)	112, 736, 982
PsuI	RGATCY	2 cut(s)	537, 1057
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	4 cut(s)	137, 407, 646, 1128
RsaNI	GTAC	4 cut(s)	136, 406, 645, 1127
RseI	CAYNNNNRTG	1 cut(s)	463
SaqAI	TTAA	2 cut(s)	915, 977
SatI	GCNGC	4 cut(s)	152, 202, 318, 455
Sau3AI	GATC	4 cut(s)	94, 511, 537, 1057
Sau96I	GGNCC	3 cut(s)	112, 736, 982
ScaI	AGTACT	1 cut(s)	646
ScrFI	CCNGG	1 cut(s)	83
SfaNI	GCATC	3 cut(s)	442, 838, 974
SfcI	CTRYAG	2 cut(s)	640, 712
SinI	GGWCC	2 cut(s)	112, 736
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	3 cut(s)	182, 649, 857
SsiI	CCGC	5 cut(s)	24, 154, 201, 320, 764
SspMI	CTAG	2 cut(s)	600, 897
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	7 cut(s)	140, 623, 644, 716, 727, 834, 1006
TaqI	TCGA	3 cut(s)	573, 625, 777
TasI	AATT	3 cut(s)	182, 649, 857
TatI	WGTACW	3 cut(s)	135, 405, 644
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	2 cut(s)	355, 815
Tru1I	TTAA	2 cut(s)	915, 977
Tru9I	TTAA	2 cut(s)	915, 977
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	3 cut(s)	151, 317, 454
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	4 cut(s)	399, 629, 807, 1061
TspGWI	ACGGA	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	112, 736
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	600, 897
ZrmI	AGTACT	1 cut(s)	646
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.