Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Forward (+)

5912310 .. 5918332

Gene Structure 6023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGGCTGCTTCCAGTCCAAAAGCCCCCGCCTCCCTTCCTCCGACCAAGCCCCTCCTCCACCAGATCCAGCCCAATATCTGTATGATGGTGTGAAAGCCAATGAAGTGGAATTGGAAGATGAACAAGCTGTTCCTGCATTCAAAGAGTATGGACTGGCAGAGCTGAGAACTGCCACCAATGGGTTCAACTCTGAACTTATTGTCTCTGAGAGTGGGGAGAAGGCCCCCAATGTTGTTTACAGAGGGAAGTTAAGAAACAATCGATTTGTCGCCATTAAGCGCTTTTCTACGCTGTCTTGGCCCGACCCACATCAGTTTTTGGCAGAGGCGGCTGGGGTTGGCAAGGTTAGGCACAAAAAATTGGTGAATTTGATTGGGTGTTGTGCTGAGGGAGATGAGAGGCTGTTGGTGGCAGAATACATGCCTAATGATACTCTCTCCAAGCACCTCTTTCACTGGGAGAAACAGCCATTGCCATGGGAAATGCGCGTTAGAATTGCATACTATATTGCACAAGCCCTTGATCATTGCAATACAGAAAACCGAAAACTGTATCATGACTTAAATGCATACAGAGTTCTTTTTGATGAGGATGGTGACCCGCGGTTATCTAGCTTTGGTCTGATAAAAAATAGCCGAGATGGTAAAAGCTATAGCACTAACTTGGCTTATACTCCACCTGAATTTTTGCGGACAGGTAGGGTCATTCCAGAGAGTGTGATCTACAGTTATGGGACTGTTCTTCTTGACCTTTTGAGTGGAAAACATATACCTCCAAGCCATGCATTGGATCTCATAAGGGGGAAAAGTTTGTTATTGTTAATGGATTCATCCTTAGAAGGACAATATGCCAATGAAGATGCAACTGAATTGGTTGAATTGGCCTCAAAATGTCTTCAATATGAGGCTAAAGATCGACCTGAGACCACATTTCTTCTGTCAGCAGTATCCCCCCTCCAAAAGCAGACAGAGGTTGCATCACTTGTTTTAATGGGTTTATCAAAAACTCCAGTGGTGATGCCAACGATACTTTCTCCCCTTGGGAAGGCCTGTGTACAGATGGACCTTTCTGCAGTTCATGAGATTTTGCTAAAGACTGGTTACAGAGATGAAGAGGGTGCAGAAAATGAACTGTCATTTCAAGAGTGGACACAACAAGTGCAAGATATGTTGAATACCAAGAAATTTGGGGACATTGCGTTCAGAGACAAGGATTTTAAAAATGCCGTGGAGCACTACTCTAAGTTGGTTTCAATGATGTCTGTTCCTTCGGGTACTATATTTGTGAGGCGAGCGCTCTCCTACTTAATGATCGGGCAACCAGAATTAGCTTTGAGAGATGCCATGGAAGCTCAAGTGTGCTTGCCTGAGTGGGCAACTGCCTTCTACATGCAGGCTCTCGCCCTTTCGAAACTGGGAATGGAAACTGACGCTCAGGACATGCTAAAGGATGGAGCTTCCTTCGAATTGAAGAAGCAAAACAGCTGGCGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

499

Amino Acids

55.95

Weight (kDa)

5.54

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	787
AccII	CGCG	2 cut(s)	489, 604
AciI	CCGC	5 cut(s)	28, 329, 602, 604, 691
AclWI	GGATC	2 cut(s)	59, 798
AcsI	RAATTY	3 cut(s)	367, 683, 1184
AfaI	GTAC	2 cut(s)	1056, 1276
AfeI	AGCGCT	2 cut(s)	281, 1296
AfiI	CCNNNNNNNGG	3 cut(s)	180, 787, 1045
AgsI	TTSAA	8 cut(s)	142, 187, 878, 899, 1142, 1174, 1254, 1471
AjuI	GAANNNNNNNTTGG	2 cut(s)	1015, 1047
AloI	GAACNNNNNNTCC	2 cut(s)	1184, 1216
AluBI	AGCT	8 cut(s)	128, 163, 615, 651, 1331, 1352, 1457, 1485
AluI	AGCT	8 cut(s)	128, 163, 615, 651, 1331, 1352, 1457, 1485
Alw21I	GWGCWC	1 cut(s)	1236
Alw26I	GTCTC	3 cut(s)	208, 917, 1200
AlwI	GGATC	2 cut(s)	59, 798
Aor51HI	AGCGCT	2 cut(s)	281, 1296
AoxI	GGCC	4 cut(s)	222, 299, 882, 1047
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	3 cut(s)	367, 683, 1184
AspLEI	GCGC	4 cut(s)	282, 489, 1297, 1491
AspS9I	GGNCC	3 cut(s)	223, 300, 1063
AsuHPI	GGTGA	3 cut(s)	376, 608, 1027
AsuII	TTCGAA	2 cut(s)	1409, 1464
AvaII	GGWCC	1 cut(s)	1063
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	1236
BbvCI	CCTCAGC	1 cut(s)	387
BccI	CCATC	5 cut(s)	80, 587, 635, 1054, 1445
BceAI	ACGGC	1 cut(s)	1211
BciVI	GTATCC	1 cut(s)	958
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	208, 917, 1200
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	3 cut(s)	652, 724, 1071
BfoI	RGCGCY	2 cut(s)	283, 1298
BfuI	GTATCC	1 cut(s)	958
BisI	GCNGC	2 cut(s)	7, 330
BlsI	GCNGC	2 cut(s)	8, 331
Bme18I	GGWCC	1 cut(s)	1063
BmgT120I	GGNCC	3 cut(s)	223, 300, 1063
BmiI	GGNNCC	1 cut(s)	225
BmrI	ACTGGG	2 cut(s)	466, 1424
BmsI	GCATC	4 cut(s)	850, 986, 1008, 1330
BmuI	ACTGGG	2 cut(s)	466, 1424
BpiI	GAAGAC	1 cut(s)	887
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
BpmI	CTGGAG	1 cut(s)	993
Bpu10I	CCTNAGC	2 cut(s)	387, 1434
Bpu14I	TTCGAA	2 cut(s)	1409, 1464
BpuEI	CTTGAG	1 cut(s)	1338
Bsa29I	ATCGAT	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	5 cut(s)	476, 602, 1039, 1227, 1344
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 787, 1045
Bse1I	ACTGG	6 cut(s)	13, 159, 461, 1010, 1102, 1419
Bse3DI	GCAATG	3 cut(s)	470, 526, 1194
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	5 cut(s)	476, 602, 1039, 1227, 1344
BseGI	GGATG	3 cut(s)	598, 830, 1456
BseLI	CCNNNNNNNGG	3 cut(s)	180, 787, 1045
BseMI	GCAATG	3 cut(s)	470, 526, 1194
BseMII	CTCAG	6 cut(s)	155, 198, 378, 912, 1359, 1448
BseNI	ACTGG	6 cut(s)	13, 159, 461, 1010, 1102, 1419
BseRI	GAGGAG	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	1140
Bsh1236I	CGCG	2 cut(s)	489, 604
BshFI	GGCC	4 cut(s)	224, 301, 884, 1049
BshVI	ATCGAT	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	1236
BslFI	GGGAC	2 cut(s)	748, 1205
BslI	CCNNNNNNNGG	3 cut(s)	180, 787, 1045
BsmAI	GTCTC	3 cut(s)	208, 917, 1200
BsmFI	GGGAC	2 cut(s)	748, 1205
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	224, 301, 884, 1049
Bso31I	GGTCTC	1 cut(s)	917
Bsp119I	TTCGAA	2 cut(s)	1409, 1464
Bsp1286I	GDGCHC	1 cut(s)	1236
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
Bsp19I	CCATGG	2 cut(s)	476, 1344
BspACI	CCGC	5 cut(s)	28, 329, 602, 604, 691
BspANI	GGCC	4 cut(s)	224, 301, 884, 1049
BspCNI	CTCAG	6 cut(s)	156, 199, 379, 913, 1360, 1447
BspDI	ATCGAT	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	489, 604
BspHI	TCATGA	2 cut(s)	556, 1078
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	2 cut(s)	59, 798
BspT104I	TTCGAA	2 cut(s)	1409, 1464
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	3 cut(s)	470, 526, 1194
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	6 cut(s)	13, 159, 461, 1010, 1102, 1419
BssECI	CCNNGG	5 cut(s)	476, 602, 1039, 1227, 1344
BssMI	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
BssT1I	CCWWGG	3 cut(s)	476, 1039, 1344
Bst4CI	ACNGT	4 cut(s)	552, 728, 739, 1134
Bst6I	CTCTTC	1 cut(s)	1107
BstAUI	TGTACA	1 cut(s)	1054
BstBI	TTCGAA	2 cut(s)	1409, 1464
BstC8I	GCNNGC	4 cut(s)	1293, 1364, 1395, 1487
BstDEI	CTNAG	8 cut(s)	164, 207, 387, 835, 921, 1242, 1368, 1434
BstDSI	CCRYGG	4 cut(s)	476, 602, 1227, 1344
BstEII	GGTNACC	1 cut(s)	596
BstENI	CCTNNNNNAGG	1 cut(s)	1043
BstF5I	GGATG	3 cut(s)	598, 830, 1456
BstFNI	CGCG	2 cut(s)	489, 604
BstH2I	RGCGCY	2 cut(s)	283, 1298
BstHHI	GCGC	4 cut(s)	282, 489, 1297, 1491
BstKTI	GATC	6 cut(s)	67, 526, 723, 793, 916, 1314
BstMAI	GTCTC	3 cut(s)	208, 917, 1200
BstMBI	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
BstMWI	GCNNNNNNNGC	4 cut(s)	134, 298, 329, 1349
BstNSI	RCATGY	3 cut(s)	424, 1393, 1444
BstPI	GGTNACC	1 cut(s)	596
BstSFI	CTRYAG	3 cut(s)	652, 724, 1071
BstUI	CGCG	2 cut(s)	489, 604
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	2 cut(s)	64, 790
BstXI	CCANNNNNNTGG	2 cut(s)	106, 477
BstYI	RGATCY	2 cut(s)	64, 790
Bsu15I	ATCGAT	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	4 cut(s)	224, 301, 884, 1049
BsuTUI	ATCGAT	1 cut(s)	262
BtgI	CCRYGG	4 cut(s)	476, 602, 1227, 1344
BtsCI	GGATG	3 cut(s)	598, 830, 1456
BtsIMutI	CAGTG	2 cut(s)	454, 1017
Cac8I	GCNNGC	4 cut(s)	1293, 1364, 1395, 1487
CciI	TCATGA	2 cut(s)	556, 1078
CfoI	GCGC	4 cut(s)	282, 489, 1297, 1491
Cfr13I	GGNCC	3 cut(s)	223, 300, 1063
Cfr42I	CCGCGG	1 cut(s)	605
ClaI	ATCGAT	1 cut(s)	262
CseI	GACGC	1 cut(s)	1439
Csp6I	GTAC	2 cut(s)	1055, 1275
CviAII	CATG	8 cut(s)	421, 477, 557, 782, 1079, 1345, 1390, 1441
CviQI	GTAC	2 cut(s)	1055, 1275
DdeI	CTNAG	8 cut(s)	164, 207, 387, 835, 921, 1242, 1368, 1434
DpnI	GATC	6 cut(s)	66, 525, 722, 792, 915, 1313
DpnII	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
DraI	TTTAAA	1 cut(s)	1219
Eam1104I	CTCTTC	1 cut(s)	1107
EarI	CTCTTC	1 cut(s)	1107
Eco130I	CCWWGG	3 cut(s)	476, 1039, 1344
Eco147I	AGGCCT	1 cut(s)	1049
Eco31I	GGTCTC	1 cut(s)	917
Eco47I	GGWCC	1 cut(s)	1063
Eco47III	AGCGCT	2 cut(s)	281, 1296
Eco91I	GGTNACC	1 cut(s)	596
EcoNI	CCTNNNNNAGG	1 cut(s)	1043
EcoO109I	RGGNCCY	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	596
EcoT14I	CCWWGG	3 cut(s)	476, 1039, 1344
EcoT22I	ATGCAT	2 cut(s)	571, 787
ErhI	CCWWGG	3 cut(s)	476, 1039, 1344
FaeI	CATG	8 cut(s)	424, 480, 560, 785, 1082, 1348, 1393, 1444
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	748, 1205
FatI	CATG	8 cut(s)	420, 476, 556, 781, 1078, 1344, 1389, 1440
FauI	CCCGC	2 cut(s)	35, 609
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	7, 330
FokI	GGATG	3 cut(s)	605, 817, 1463
Fsp4HI	GCNGC	2 cut(s)	7, 330
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	4 cut(s)	281, 488, 1296, 1490
GluI	GCNGC	2 cut(s)	7, 330
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	993
HaeII	RGCGCY	2 cut(s)	283, 1298
HaeIII	GGCC	4 cut(s)	224, 301, 884, 1049
HgaI	GACGC	1 cut(s)	1439
HhaI	GCGC	4 cut(s)	282, 489, 1297, 1491
Hin1II	CATG	8 cut(s)	424, 480, 560, 785, 1082, 1348, 1393, 1444
Hin6I	GCGC	4 cut(s)	280, 487, 1295, 1489
HinP1I	GCGC	4 cut(s)	280, 487, 1295, 1489
HinfI	GANTC	1 cut(s)	827
HphI	GGTGA	3 cut(s)	376, 608, 1027
Hpy166II	GTNNAC	3 cut(s)	238, 1055, 1149
Hpy188I	TCNGA	5 cut(s)	43, 193, 208, 624, 1205
Hpy188III	TCNNGA	6 cut(s)	557, 710, 746, 1079, 1142, 1436
Hpy8I	GTNNAC	3 cut(s)	238, 1055, 1149
HpyAV	CCTTC	7 cut(s)	45, 214, 833, 1039, 1278, 1393, 1471
HpyCH4III	ACNGT	4 cut(s)	552, 728, 739, 1134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	134, 298, 329, 1349
HpyF3I	CTNAG	8 cut(s)	164, 207, 387, 835, 921, 1242, 1368, 1434
Hsp92II	CATG	8 cut(s)	424, 480, 560, 785, 1082, 1348, 1393, 1444
HspAI	GCGC	4 cut(s)	280, 487, 1295, 1489
Ksp22I	TGATCA	1 cut(s)	523
KspI	CCGCGG	1 cut(s)	605
Kzo9I	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
LmnI	GCTCC	2 cut(s)	1231, 1454
LweI	GCATC	4 cut(s)	850, 986, 1008, 1330
MaeI	CTAG	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	596, 1100
MalI	GATC	6 cut(s)	66, 525, 722, 792, 915, 1313
MboI	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
MboII	GAAGA	7 cut(s)	128, 734, 869, 887, 926, 1124, 1483
MflI	RGATCY	2 cut(s)	64, 790
MhlI	GDGCHC	1 cut(s)	1236
MmeI	TCCRAC	1 cut(s)	66
Mph1103I	ATGCAT	2 cut(s)	571, 787
MseI	TTAA	7 cut(s)	251, 276, 563, 821, 989, 1218, 1307
MslI	CAYNNNNRTG	1 cut(s)	475
MspA1I	CMGCKG	2 cut(s)	604, 1485
Mva1269I	GAATGC	1 cut(s)	137
MvnI	CGCG	2 cut(s)	489, 604
MwoI	GCNNNNNNNGC	4 cut(s)	134, 298, 329, 1349
NcoI	CCATGG	2 cut(s)	476, 1344
NdeII	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
NlaIII	CATG	8 cut(s)	424, 480, 560, 785, 1082, 1348, 1393, 1444
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	662
NmuCI	GTSAC	1 cut(s)	596
NsiI	ATGCAT	2 cut(s)	571, 787
NspI	RCATGY	3 cut(s)	424, 1393, 1444
NspV	TTCGAA	2 cut(s)	1409, 1464
PagI	TCATGA	2 cut(s)	556, 1078
PceI	AGGCCT	1 cut(s)	1049
PctI	GAATGC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	827
PflMI	CCANNNNNTGG	1 cut(s)	787
PkrI	GCNGC	2 cut(s)	8, 331
PspEI	GGTNACC	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	3 cut(s)	223, 300, 1063
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	2 cut(s)	64, 790
PvuII	CAGCTG	1 cut(s)	1485
RsaI	GTAC	2 cut(s)	1056, 1276
RsaNI	GTAC	2 cut(s)	1055, 1275
RseI	CAYNNNNRTG	1 cut(s)	475
SacII	CCGCGG	1 cut(s)	605
SaqAI	TTAA	7 cut(s)	251, 276, 563, 821, 989, 1218, 1307
SatI	GCNGC	2 cut(s)	7, 330
Sau3AI	GATC	6 cut(s)	64, 523, 720, 790, 913, 1311
Sau96I	GGNCC	3 cut(s)	223, 300, 1063
SduI	GDGCHC	1 cut(s)	1236
SfaNI	GCATC	4 cut(s)	850, 986, 1008, 1330
SfcI	CTRYAG	3 cut(s)	652, 724, 1071
Sfr303I	CCGCGG	1 cut(s)	605
SfuI	TTCGAA	2 cut(s)	1409, 1464
SgrBI	CCGCGG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	1063
SmiMI	CAYNNNNRTG	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	1353
SmoI	CTYRAG	1 cut(s)	1353
SseBI	AGGCCT	1 cut(s)	1049
SsiI	CCGC	5 cut(s)	28, 329, 602, 604, 691
SspMI	CTAG	1 cut(s)	612
StuI	AGGCCT	1 cut(s)	1049
StyI	CCWWGG	3 cut(s)	476, 1039, 1344
TaaI	ACNGT	4 cut(s)	552, 728, 739, 1134
TaqI	TCGA	4 cut(s)	262, 916, 1409, 1464
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	7 cut(s)	251, 276, 563, 821, 989, 1218, 1307
Tru9I	TTAA	7 cut(s)	251, 276, 563, 821, 989, 1218, 1307
TscAI	CASTG	2 cut(s)	461, 1017
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	7 cut(s)	117, 135, 819, 870, 1067, 1125, 1143
TspRI	CASTG	2 cut(s)	461, 1017
Van91I	CCANNNNNTGG	1 cut(s)	787
VpaK11BI	GGWCC	1 cut(s)	1063
XagI	CCTNNNNNAGG	1 cut(s)	1043
XapI	RAATTY	3 cut(s)	367, 683, 1184
XceI	RCATGY	3 cut(s)	424, 1393, 1444
XspI	CTAG	1 cut(s)	612
Zsp2I	ATGCAT	2 cut(s)	571, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.