Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005313

Physical Location & Seq

Genomic Coordinates Reverse (-)

3553455 .. 3554663

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTCGAAACCCGACCCGACCGATGGGGAACAAGCCGAGGTTGGGGACCAAGCGCCGGCGTTCAAAGAGTACGGTACGAACGAGCTACGGAAGGCGATGAATGGGTTCGGCTACGAATTTATAGTTTCGAGAGCGGCGAAAAAGCCCCAAATGTAGTTTACAAAGGGAAGCTTGAAAGCAATCTCCTTGTTGCTGTGAAACGCTTCTCCAAGCGGGTCTTGGCGGAGGCCCGGCGGTTTGTGGGCGAGGCTACGGGAGTGGGGAAGTTTAGGCACAAGAGATTAGTGAATCGATTGGTTTTGTGCCGAGGAGATGAACGCCTCTTGGTGGCTCGGTACATGTCCAATGATACTCTTTCCAAGCATCTCTTCCATTGGGATAAGCAGCCATTGCCATGGGAAATGCGTGTTAGAGTTGCATATTATATTGCACGTGCACTTGATCATTGTAATACTGGAAAGCATATTCCTCCCCTCCATGCACTCGACTTGATAAGGGGAAAGAATGTATTGTTGTTGATGGATTCATCATTGGAAGGACAGTATGAGAATGATGATGCAACCAAATTGGTTGAACTTGCTTCCAAATGTCTTCGATCCGAGGCTAGGGATAGAGGAGATATTAAGTGTCTTCTTACGCTGTTGCACCACTTCAAAAGCAGAAAGAGGGACGAAGAAGGTGCAGAAAATGAGCTTTCATTTCAAGAATGGACACAGCAAGTCCAAGACATGTTGAACACAAAGAAATTTGGAGATATTGCATTTAGAGACAAGGATTTCAAGAATGCAATTGAGTATTATTCCAAGTTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

282

Amino Acids

32.9

Weight (kDa)

9.61

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	52 - 154	4.9e-08	Protein tyrosine and serine/threonine kinase
TPR_BSK1_C	PF25575	202 - 275	3.8e-21	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46570
fragaria_vesca	FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570 FvH4_5g21570
malus_domestica	MD06G1030500.v1.1 MD07G1082900.v1.1
prunus_persica	Prupe.2G110200_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1 Prupe.5G041700_v2.0.a1
pyrus_communis	pycom06g02520 pycom07g06620 pycom16g24750
rosa_chinensis	RchiOBHm_Chr7g0208991
rosa_laevigata	RLG00000003174
rosa_multiflora	Rmu_sc0002829.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249910 Rroxscaffold_5G00335930
rosa_rugosa	Rorug07G0107900 Rorug07G0108000
rosa_samantha	Rh7AG242700 Rh7BG237500 Rh7CG257800 Rh7DG249600
rosa_wichuraiana	Rw7G020560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	5 cut(s)	135, 214, 224, 235, 829
AclWI	GGATC	1 cut(s)	591
AcsI	RAATTY	2 cut(s)	117, 746
AcvI	CACGTG	1 cut(s)	434
AfaI	GTAC	3 cut(s)	72, 77, 338
AfiI	CCNNNNNNNGG	5 cut(s)	24, 43, 56, 328, 606
AflIII	ACRYGT	2 cut(s)	339, 729
AgsI	TTSAA	7 cut(s)	65, 176, 575, 655, 704, 736, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	3 cut(s)	86, 172, 694
AluI	AGCT	3 cut(s)	86, 172, 694
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	1 cut(s)	762
Alw44I	GTGCAC	1 cut(s)	435
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	2 cut(s)	117, 746
Asp700I	GAANNNNTTC	2 cut(s)	105, 203
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	47, 229
AsuC2I	CCSGG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	434
BbsI	GAAGAC	2 cut(s)	584, 623
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	18, 514, 829
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BclI	TGATCA	2 cut(s)	442, 810
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	2 cut(s)	136, 386
BlsI	GCNGC	2 cut(s)	137, 387
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 229
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	373, 547
BpiI	GAAGAC	2 cut(s)	584, 623
BpuMI	CCSGG	1 cut(s)	232
Bsa29I	ATCGAT	1 cut(s)	292
BsaAI	YACGTR	1 cut(s)	434
BsaJI	CCNNGG	4 cut(s)	37, 307, 395, 600
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 43, 56, 328, 606
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	389
BseCI	ATCGAT	1 cut(s)	292
BseDI	CCNNGG	4 cut(s)	37, 307, 395, 600
BseLI	CCNNNNNNNGG	5 cut(s)	24, 43, 56, 328, 606
BseMI	GCAATG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	324, 630
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	702
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	230
BshVI	ATCGAT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	2 cut(s)	57, 232
BslFI	GGGAC	2 cut(s)	60, 683
BslI	CCNNNNNNNGG	5 cut(s)	24, 43, 56, 328, 606
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	2 cut(s)	60, 683
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	442, 596, 810
Bsp19I	CCATGG	1 cut(s)	395
BspACI	CCGC	5 cut(s)	135, 214, 224, 235, 829
BspANI	GGCC	1 cut(s)	230
BspDI	ATCGAT	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	591
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	460
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	4 cut(s)	37, 307, 395, 600
BssMI	GATC	3 cut(s)	442, 596, 810
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	75, 543
Bst6I	CTCTTC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	391
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	445, 599, 813
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	3 cut(s)	442, 596, 810
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNSI	RCATGY	2 cut(s)	343, 733
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	2 cut(s)	584, 623
BstXI	CCANNNNNNTGG	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	230
BsuTUI	ATCGAT	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	395
BtgZI	GCGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	56
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	47, 229
ClaI	ATCGAT	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	71, 76, 337
CviAII	CATG	4 cut(s)	340, 396, 479, 730
CviQI	GTAC	3 cut(s)	71, 76, 337
DpnI	GATC	3 cut(s)	444, 598, 812
DpnII	GATC	3 cut(s)	442, 596, 810
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	2 cut(s)	239, 844
Eco130I	CCWWGG	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	47
Eco72I	CACGTG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	343, 399, 482, 733
FaiI	YATR	9 cut(s)	123, 341, 397, 421, 426, 465, 480, 546, 731
FalI	AAGNNNNNCTT	6 cut(s)	156, 188, 203, 235, 353, 385
FaqI	GGGAC	2 cut(s)	60, 683
FatI	CATG	4 cut(s)	339, 395, 478, 729
FauI	CCCGC	1 cut(s)	207
FbaI	TGATCA	2 cut(s)	442, 810
Fnu4HI	GCNGC	2 cut(s)	136, 386
Fsp4HI	GCNGC	2 cut(s)	136, 386
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	136, 386
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	2 cut(s)	57, 232
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	343, 399, 482, 733
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	289, 524, 841
HpaII	CCGG	2 cut(s)	57, 232
Hpy166II	GTNNAC	2 cut(s)	160, 437
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	3 cut(s)	130, 704, 781
Hpy8I	GTNNAC	2 cut(s)	160, 437
HpyAV	CCTTC	3 cut(s)	86, 530, 671
HpyCH4III	ACNGT	2 cut(s)	75, 543
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	9 cut(s)	419, 431, 437, 482, 560, 646, 683, 761, 788
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	4 cut(s)	343, 399, 482, 733
HspAI	GCGC	1 cut(s)	54
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	2 cut(s)	442, 810
Kzo9I	GATC	3 cut(s)	442, 596, 810
LpnPI	CCDG	3 cut(s)	70, 245, 441
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	373, 547
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	433
MalI	GATC	3 cut(s)	444, 598, 812
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	3 cut(s)	442, 596, 810
MboII	GAAGA	4 cut(s)	361, 584, 623, 686
MfeI	CAATTG	1 cut(s)	789
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	4 cut(s)	117, 566, 746, 789
MreI	CGCCGGCG	1 cut(s)	56
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	2 cut(s)	105, 203
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	394
MspI	CCGG	2 cut(s)	57, 232
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	790
MwoI	GCNNNNNNNGC	1 cut(s)	391
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	3 cut(s)	442, 596, 810
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	343, 399, 482, 733
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	2 cut(s)	62, 332
NspI	RCATGY	2 cut(s)	343, 733
PciI	ACATGT	2 cut(s)	339, 729
PcsI	WCGNNNNNNNCGW	2 cut(s)	79, 135
PctI	GAATGC	1 cut(s)	790
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	2 cut(s)	105, 203
PfeI	GAWTC	3 cut(s)	289, 524, 841
PkrI	GCNGC	2 cut(s)	137, 387
PmaCI	CACGTG	1 cut(s)	434
PmlI	CACGTG	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	434
PscI	ACATGT	2 cut(s)	339, 729
PspCI	CACGTG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	47, 229
RsaI	GTAC	3 cut(s)	72, 77, 338
RsaNI	GTAC	3 cut(s)	71, 76, 337
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	2 cut(s)	136, 386
Sau3AI	GATC	3 cut(s)	442, 596, 810
Sau96I	GGNCC	2 cut(s)	47, 229
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	6 cut(s)	43, 88, 174, 436, 682, 696
SfaNI	GCATC	2 cut(s)	373, 547
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	394
Sse9I	AATT	4 cut(s)	117, 566, 746, 789
SsiI	CCGC	5 cut(s)	135, 214, 224, 235, 829
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	75, 543
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	5 cut(s)	6, 129, 292, 486, 595
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	4 cut(s)	117, 566, 746, 789
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	3 cut(s)	289, 524, 841
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	4 cut(s)	114, 330, 516, 687
TspGWI	ACGGA	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	117, 746
XceI	RCATGY	2 cut(s)	343, 733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	2 cut(s)	105, 203
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.