AT5G47120

Belongs to the BI1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012793
Physical Location & Seq
Forward (+)
19135952 .. 19138025
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47120.1

Sequence Viewer

Length: 744 bp
ATGGATGCGTTCTCTTCCTTCTTCGATTCTCAACCTGGTAGCAGAAGCTGGAGCTATGATTCTCTTAAAAACTTCCGTCAGATTTCTCCAGCCGTTCAGAATCATCTTAAACGGGTTTATTTGACCTTATGTTGTGCTCTTGTGGCGTCTGCCTTTGGAGCTTACCTCCATGTGCTCTGGAATATCGGCGGTATTCTTACAACGATTGGATGTATTGGAACTATGATTTGGCTCCTTTCATGTCCTCCTTATGAACACCAAAAAAGGCTTTCTCTTCTGTTTGTGTCTGCTGTTCTTGAAGGTGCTTCTGTTGGCCCCTTGATCAAAGTGGCAATTGATGTTGACCCAAGCATCCTTATCACTGCATTTGTTGGAACTGCGATAGCGTTTGTCTGTTTCTCAGCAGCAGCAATGTTAGCAAGACGCAGGGAGTATCTCTACCTTGGAGGACTGCTTTCATCTGGCTTGTCTATGCTAATGTGGCTCCAGTTTGCCTCTTCAATCTTTGGTGGCTCTGCATCTATCTTTAAGTTTGAGTTGTACTTTGGACTTTTGATCTTTGTGGGATACATGGTGGTGGACACACAAGAGATTATAGAAAAGGCACACCTCGGTGACATGGACTATGTAAAACATTCGTTGACCCTTTTCACTGACTTTGTAGCTGTGTTTGTTCGGATTCTCATCATAATGTTGAAGAACTCAGCAGATAAAGAAGAGAAGAAGAAGAAAAGGAGAAACTGA

Protein Analysis

247

Amino Acids

27.48

Weight (kDa)

8.93

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 33 - 231 5.7e-43 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47120
fragaria_vesca FvH4_5g20220
malus_domestica MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica Prupe.5G058500_v2.0.a1
pyrus_communis pycom04g04550 pycom06g04130
rosa_chinensis RchiOBHm_Chr7g0205291
rosa_laevigata RLG00000003390
rosa_multiflora Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii Rroxscaffold_3G00252500
rosa_rugosa Rorug07G0089500.1
rosa_samantha Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana Rw7G019020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 1 cut(s) 542
AgsI TTSAA 3 cut(s) 299, 501, 697
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 4 cut(s) 48, 54, 161, 665
AluI AGCT 4 cut(s) 48, 54, 161, 665
Alw21I GWGCWC 2 cut(s) 139, 177
AlwNI CAGNNNCTG 1 cut(s) 48
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 404, 407
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 626
Bbv12I GWGCWC 2 cut(s) 139, 177
BbvI GCAGC 2 cut(s) 416, 419
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 36
BciVI GTATCC 1 cut(s) 560
BclI TGATCA 1 cut(s) 321
BfuI GTATCC 1 cut(s) 560
BisI GCNGC 2 cut(s) 405, 408
BlsI GCNGC 2 cut(s) 406, 409
Bme1390I CCNGG 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 3 cut(s) 233, 316, 485
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 360, 527
BplI GAGNNNNNCTC 2 cut(s) 150, 182
BpmI CTGGAG 3 cut(s) 70, 72, 470
BsaBI GATNNNNATC 1 cut(s) 683
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 442, 610
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 1 cut(s) 683
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 442, 610
BseGI GGATG 3 cut(s) 10, 215, 351
BseJI GATNNNNATC 1 cut(s) 683
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 2 cut(s) 414, 717
BseNI ACTGG 1 cut(s) 487
BseXI GCAGC 2 cut(s) 416, 419
BshFI GGCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 139, 177
BsnI GGCC 1 cut(s) 315
Bsp1286I GDGCHC 2 cut(s) 139, 177
Bsp143I GATC 2 cut(s) 321, 555
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 413, 716
BspLI GGNNCC 3 cut(s) 233, 316, 485
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 442, 610
BssMI GATC 2 cut(s) 321, 555
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 36
Bst6I CTCTTC 4 cut(s) 19, 279, 502, 711
BstACI GRCGYC 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 400, 703
BstF5I GGATG 3 cut(s) 10, 215, 351
BstKTI GATC 2 cut(s) 324, 558
BstMBI GATC 2 cut(s) 321, 555
BstMWI GCNNNNNNNGC 4 cut(s) 143, 158, 416, 481
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 2 cut(s) 416, 419
BsuI GTATCC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 3 cut(s) 10, 215, 351
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 360, 651
CaiI CAGNNNCTG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 2 cut(s) 135, 432
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 1 cut(s) 541
CviAII CATG 4 cut(s) 170, 240, 571, 619
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 400, 703
DpnI GATC 2 cut(s) 323, 557
DpnII GATC 2 cut(s) 321, 555
Eam1104I CTCTTC 4 cut(s) 19, 279, 502, 711
EarI CTCTTC 4 cut(s) 19, 279, 502, 711
Eco130I CCWWGG 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 173, 243, 574, 622
FatI CATG 4 cut(s) 169, 239, 570, 618
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 405, 408
FokI GGATG 3 cut(s) 17, 222, 338
Fsp4HI GCNGC 2 cut(s) 405, 408
GluI GCNGC 2 cut(s) 405, 408
GsuI CTGGAG 3 cut(s) 70, 72, 470
HaeIII GGCC 1 cut(s) 315
HgaI GACGC 2 cut(s) 135, 432
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 4 cut(s) 173, 243, 574, 622
HincII GTYRAC 2 cut(s) 343, 642
HindII GTYRAC 2 cut(s) 343, 642
HinfI GANTC 4 cut(s) 26, 59, 100, 679
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 3 cut(s) 343, 580, 642
Hpy188I TCNGA 3 cut(s) 81, 99, 678
Hpy188III TCNNGA 2 cut(s) 178, 296
Hpy8I GTNNAC 3 cut(s) 343, 580, 642
HpyAV CCTTC 2 cut(s) 28, 293
HpyCH4V TGCA 2 cut(s) 365, 518
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 158, 416, 481
HpyF3I CTNAG 2 cut(s) 400, 703
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 4 cut(s) 173, 243, 574, 622
Ksp22I TGATCA 1 cut(s) 321
Kzo9I GATC 2 cut(s) 321, 555
LmnI GCTCC 4 cut(s) 51, 158, 237, 489
LpnPI CCDG 8 cut(s) 21, 34, 48, 102, 163, 412, 447, 500
Lsp1109I GCAGC 2 cut(s) 416, 419
LweI GCATC 2 cut(s) 360, 527
MabI ACCWGGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 614
MalI GATC 2 cut(s) 323, 557
MboI GATC 2 cut(s) 321, 555
MboII GAAGA 9 cut(s) 6, 13, 266, 489, 709, 728, 733, 736, 739
MfeI CAATTG 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 139, 177
MluCI AATT 1 cut(s) 333
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 5 cut(s) 176, 255, 440, 505, 620
MseI TTAA 3 cut(s) 66, 108, 528
MslI CAYNNNNRTG 3 cut(s) 575, 612, 689
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 4 cut(s) 143, 158, 416, 481
NdeII GATC 2 cut(s) 321, 555
NlaIII CATG 4 cut(s) 173, 243, 574, 622
NlaIV GGNNCC 3 cut(s) 233, 316, 485
NmuCI GTSAC 1 cut(s) 614
OliI CACNNNNGTG 1 cut(s) 612
PfeI GAWTC 4 cut(s) 26, 59, 100, 679
PkrI GCNGC 2 cut(s) 406, 409
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 233, 316, 485
PspPI GGNCC 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 48
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 3 cut(s) 575, 612, 689
SaqAI TTAA 3 cut(s) 66, 108, 528
SatI GCNGC 2 cut(s) 405, 408
Sau3AI GATC 2 cut(s) 321, 555
Sau96I GGNCC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 2 cut(s) 139, 177
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 2 cut(s) 360, 527
SmiMI CAYNNNNRTG 3 cut(s) 575, 612, 689
Sse9I AATT 1 cut(s) 333
SsiI CCGC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 442
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 333
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 4 cut(s) 26, 59, 100, 679
Tru1I TTAA 3 cut(s) 66, 108, 528
Tru9I TTAA 3 cut(s) 66, 108, 528
TscAI CASTG 2 cut(s) 367, 658
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 2 cut(s) 404, 407
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 3 cut(s) 228, 267, 447
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 2 cut(s) 367, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.