Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Reverse (-)

46531795 .. 46532325

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTGGCAAAGCGCAGGGAATACCTTTACCTTGGGGGCTTGCTCTCTTCGGGCGTGTCCATCCTTCTCTGGTTGCGATTTGCTTCTGCCATCTTTGGTGGTTCTGCTTCCCTTTTTGAGTTTGAGTTGTATTTTGGGCTTATGATTTTCGTGGGCTACATGGTAGTCGACACCCAGGAGATGATTGAGAGGGCACACCTTGGTGATCTGGACTATGTGAAGCATGCCCTAACCCTTTTCACTGATTTCATTGCTGTTTTTGTTCGCATACTCATCATCATGTTGAAGAATGCTGACAAGAATGAGAAGAAGAAGAAAAGGAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

109

Amino Acids

12.59

Weight (kDa)

9.26

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	2 - 94	1.6e-19	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	174
AleI	CACNNNNGTG	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	196
BccI	CCATC	2 cut(s)	68, 98
BciT130I	CCWGG	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	31, 174, 199
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	31, 174, 199
BseGI	GGATG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	249
BssECI	CCNNGG	3 cut(s)	31, 174, 199
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	2 cut(s)	31, 199
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	41, 225
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	41, 225
CfoI	GCGC	1 cut(s)	15
CviAII	CATG	3 cut(s)	160, 224, 280
CviJI	RGCY	3 cut(s)	39, 139, 156
CviKI_1	RGCY	3 cut(s)	39, 139, 156
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	2 cut(s)	31, 199
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	31, 199
ErhI	CCWWGG	2 cut(s)	31, 199
FaeI	CATG	3 cut(s)	163, 227, 283
FaiI	YATR	6 cut(s)	143, 161, 216, 225, 269, 281
FatI	CATG	3 cut(s)	159, 223, 279
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	163, 227, 283
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	163, 227, 283
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	4 cut(s)	55, 161, 188, 194
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	5 cut(s)	39, 298, 319, 322, 325
MhlI	GDGCHC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	183, 315
MslI	CAYNNNNRTG	2 cut(s)	201, 278
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	163, 227, 283
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
RseI	CAYNNNNRTG	2 cut(s)	201, 278
SalI	GTCGAC	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	3 cut(s)	27, 33, 201
SmiMI	CAYNNNNRTG	2 cut(s)	201, 278
SphI	GCATGC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	31, 199
TaqI	TCGA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	247
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.