Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Forward (+)

6080364 .. 6083493

Gene Structure 3130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1051800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGACGCCTTCACGTCTTTCTTCGATTCCCAAACGTCATCGAGAAACCGCTGGGCCTCCGAGTCTCTCAAGAATTTCCGTCAGATCTCTCCCGTCGTTCAGAATCATCTCAAATTGGTTTACCTCACTCTATGCTGCGCCCTCATTGCATCAGCTGCTGGAGCCTACCTCCATATCCTGTGGAACATCGGAGGCATTATCACCGCTCTTTCTTGCATGGGCTGCATGGTGTGGTTACTCTGCACACCAACCTATCAAGAGAAGAAGAGGGTTTCTCTCCTGATGGCTGCTGGTCTCTTTGAGGGGGCCACGATTGGGCCTTTAATTGAACTGGCCATTGAGATTAACCCAAGTGTCTTGATCAGTGCATTTGGAGGAACTGCTCTGGCCTTTGGTTGTTTCTCAGCAGCAGCCATGTTGGCAAGGCGCCGGGAATACCTTTACCTGGGGGGTTTGCTTTCTTCTGGCCTTTCTATGCTAATGTGGTTGCACTTTGCTGCTTCTATCTTTGGGGGTTCTGCAGCACTTTTCAAGTTTGAGCTGTATTTCGGGCTTTTGATTTTCGTGGGCTACATGGTAGTCGACACCCAGGAAATGATTGAGAAGGCACACCATGGTGACCTGGACTATGTCAAGCATGCCCTGACCCTTTTCACCGACTTCGTTGCCGTGTTTGTCCGTATACTGATTATCATGTTGAAGAACTCGGCTGAGAGGAATGAGAGGAAGAAGAAAAGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

249

Amino Acids

27.55

Weight (kDa)

8.89

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	34 - 232	5.6e-40	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	426
AccBSI	CCGCTC	1 cut(s)	206
AccI	GTMKAC	2 cut(s)	582, 682
AciI	CCGC	2 cut(s)	49, 204
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	2 cut(s)	6, 427
AfiI	CCNNNNNNNGG	2 cut(s)	315, 445
AgsI	TTSAA	3 cut(s)	329, 532, 700
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	3 cut(s)	444, 588, 621
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	2 cut(s)	155, 541
AluI	AGCT	2 cut(s)	155, 541
Alw26I	GTCTC	2 cut(s)	69, 299
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	6 cut(s)	54, 306, 317, 333, 387, 466
ApeKI	GCWGC	8 cut(s)	135, 155, 222, 287, 407, 410, 497, 521
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	140, 429
AspS9I	GGNCC	3 cut(s)	54, 306, 317
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	193, 629, 646
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	426
BbvI	GCAGC	8 cut(s)	122, 142, 209, 274, 419, 422, 484, 533
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	653
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	3 cut(s)	446, 590, 623
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	69, 299
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	8 cut(s)	136, 156, 223, 288, 408, 411, 498, 522
BlsI	GCNGC	8 cut(s)	137, 157, 224, 289, 409, 412, 499, 523
Bme1390I	CCNGG	4 cut(s)	431, 446, 590, 623
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	54, 306, 317
BmiI	GGNNCC	3 cut(s)	163, 307, 428
BmrFI	CCNGG	4 cut(s)	431, 446, 590, 623
BmsI	GCATC	1 cut(s)	158
BplI	GAGNNNNNCTC	4 cut(s)	153, 185, 259, 291
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	2 cut(s)	6, 427
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	445, 588, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 445
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	446, 590, 623
BseDI	CCNNGG	3 cut(s)	445, 588, 613
BseLI	CCNNNNNNNGG	2 cut(s)	315, 445
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	417, 702
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	8 cut(s)	122, 142, 209, 274, 419, 422, 484, 533
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	6 cut(s)	56, 308, 319, 335, 389, 468
BshNI	GGYRCC	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	315, 445
BsmAI	GTCTC	2 cut(s)	69, 299
BsnI	GGCC	6 cut(s)	56, 308, 319, 335, 389, 468
Bso31I	GGTCTC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	84, 360
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	2 cut(s)	49, 204
BspANI	GGCC	6 cut(s)	56, 308, 319, 335, 389, 468
BspCNI	CTCAG	2 cut(s)	416, 703
BspLI	GGNNCC	3 cut(s)	163, 307, 428
BspMAI	CTGCAG	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	426
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	445, 588, 613
BssMI	GATC	2 cut(s)	84, 360
BssNAI	GTATAC	1 cut(s)	683
BssNI	GRCGYC	2 cut(s)	6, 427
BssT1I	CCWWGG	1 cut(s)	613
Bst1107I	GTATAC	1 cut(s)	683
Bst2UI	CCWGG	3 cut(s)	446, 590, 623
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	2 cut(s)	6, 427
BstAPI	GCANNNNNTGC	2 cut(s)	155, 222
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	403, 711
BstDSI	CCRYGG	1 cut(s)	613
BstEII	GGTNACC	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	140, 429
BstKTI	GATC	2 cut(s)	87, 363
BstMAI	GTCTC	2 cut(s)	69, 299
BstMBI	GATC	2 cut(s)	84, 360
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 155, 161, 222, 419
BstNI	CCWGG	3 cut(s)	446, 590, 623
BstNSI	RCATGY	1 cut(s)	641
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	429, 444, 588, 621
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	8 cut(s)	122, 142, 209, 274, 419, 422, 484, 533
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZ17I	GTATAC	1 cut(s)	683
BsuRI	GGCC	6 cut(s)	56, 308, 319, 335, 389, 468
BtgI	CCRYGG	1 cut(s)	613
BtrI	CACGTC	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	2 cut(s)	140, 429
Cfr13I	GGNCC	3 cut(s)	54, 306, 317
CseI	GACGC	1 cut(s)	14
CviAII	CATG	7 cut(s)	217, 226, 415, 574, 614, 638, 694
DdeI	CTNAG	2 cut(s)	403, 711
DinI	GGCGCC	1 cut(s)	428
DpnI	GATC	2 cut(s)	86, 362
DpnII	GATC	2 cut(s)	84, 360
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	3 cut(s)	444, 588, 621
EcoT14I	CCWWGG	1 cut(s)	613
EgeI	GGCGCC	1 cut(s)	428
EheI	GGCGCC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	7 cut(s)	220, 229, 418, 577, 617, 641, 697
FatI	CATG	7 cut(s)	216, 225, 414, 573, 613, 637, 693
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	582, 682
Fnu4HI	GCNGC	8 cut(s)	136, 156, 223, 288, 408, 411, 498, 522
Fsp4HI	GCNGC	8 cut(s)	136, 156, 223, 288, 408, 411, 498, 522
GlaI	GCGC	2 cut(s)	139, 428
GluI	GCNGC	8 cut(s)	136, 156, 223, 288, 408, 411, 498, 522
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	6 cut(s)	56, 308, 319, 335, 389, 468
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	140, 429
Hin1I	GRCGYC	2 cut(s)	6, 427
Hin1II	CATG	7 cut(s)	220, 229, 418, 577, 617, 641, 697
Hin6I	GCGC	2 cut(s)	138, 427
HinP1I	GCGC	2 cut(s)	138, 427
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	3 cut(s)	26, 62, 103
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	3 cut(s)	193, 629, 646
Hpy166II	GTNNAC	3 cut(s)	121, 583, 683
Hpy188I	TCNGA	4 cut(s)	61, 84, 102, 191
Hpy188III	TCNNGA	5 cut(s)	42, 70, 257, 280, 358
Hpy8I	GTNNAC	3 cut(s)	121, 583, 683
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	19, 598, 732
HpyCH4IV	ACGT	2 cut(s)	14, 35
HpyCH4V	TGCA	7 cut(s)	149, 216, 225, 243, 368, 490, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 155, 161, 222, 419
HpyF3I	CTNAG	2 cut(s)	403, 711
HpySE526I	ACGT	2 cut(s)	14, 35
Hsp92I	GRCGYC	2 cut(s)	6, 427
Hsp92II	CATG	7 cut(s)	220, 229, 418, 577, 617, 641, 697
HspAI	GCGC	2 cut(s)	138, 427
KasI	GGCGCC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	84, 360
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	8 cut(s)	122, 142, 209, 274, 419, 422, 484, 533
LweI	GCATC	1 cut(s)	158
MaeII	ACGT	2 cut(s)	14, 35
MaeIII	GTNAC	2 cut(s)	234, 617
MalI	GATC	2 cut(s)	86, 362
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	2 cut(s)	84, 360
MboII	GAAGA	7 cut(s)	13, 274, 277, 453, 712, 739, 742
MflI	RGATCY	1 cut(s)	84
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	73, 113, 324
MluNI	TGGCCA	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	323, 345
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	2 cut(s)	51, 155
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	4 cut(s)	431, 446, 590, 623
MvaI	CCWGG	3 cut(s)	446, 590, 623
MwoI	GCNNNNNNNGC	5 cut(s)	146, 155, 161, 222, 419
NarI	GGCGCC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	613
NdeII	GATC	2 cut(s)	84, 360
NlaIII	CATG	7 cut(s)	220, 229, 418, 577, 617, 641, 697
NlaIV	GGNNCC	3 cut(s)	163, 307, 428
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	1 cut(s)	641
OliI	CACNNNNGTG	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	641
PfeI	GAWTC	2 cut(s)	26, 103
PflFI	GACNNNGTC	1 cut(s)	629
PkrI	GCNGC	8 cut(s)	137, 157, 224, 289, 409, 412, 499, 523
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	3 cut(s)	444, 588, 621
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	444, 588, 621
PspN4I	GGNNCC	3 cut(s)	163, 307, 428
PspPI	GGNCC	3 cut(s)	54, 306, 317
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	629
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	615
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	323, 345
SatI	GCNGC	8 cut(s)	136, 156, 223, 288, 408, 411, 498, 522
Sau3AI	GATC	2 cut(s)	84, 360
Sau96I	GGNCC	3 cut(s)	54, 306, 317
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	431, 446, 590, 623
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	519
SfoI	GGCGCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	3 cut(s)	73, 113, 324
SsiI	CCGC	2 cut(s)	49, 204
SspDI	GGCGCC	1 cut(s)	426
StyD4I	CCNGG	4 cut(s)	429, 444, 588, 621
StyI	CCWWGG	1 cut(s)	613
TaiI	ACGT	2 cut(s)	17, 38
TaqI	TCGA	3 cut(s)	24, 41, 582
TasI	AATT	3 cut(s)	73, 113, 324
TfiI	GAWTC	2 cut(s)	26, 103
Tru1I	TTAA	2 cut(s)	323, 345
Tru9I	TTAA	2 cut(s)	323, 345
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	8 cut(s)	135, 155, 222, 287, 407, 410, 497, 521
Tsp45I	GTSAC	1 cut(s)	617
TspGWI	ACGGA	2 cut(s)	68, 668
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	2 cut(s)	582, 682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.