Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Reverse (-)

47980189 .. 47985579

Gene Structure 5391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003390

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGACGCCTTCACCTCCTTCTTCGATTCCCAATCGTCTTCAAGGAACCGCTGGACTTACGATTCGCTCAAGAATTTCCGTCAGATCTCTCCCATCGTTCAGAACCATCTCAAACTGGTCTACCTCACGCTATGCTGTGCTCTCGTTGGTGCGGCTGCTGGAGCTTACCTGCATCTTATCTGGAACATTGGCGGCCTTTTAACAACTCTTGCTACAGTGGGATGTACTATCTGGTTACTCTCCACCCCTCCCTATGAAGAGAAAAAGAGGGTTTCTCTACTAATGGCGGCTGCAACCTTTCAAGGGGCTACTGTTGGTCCTCTCATTGATCTGGCCATTAACATGAACCCAAGCATCCTGATCAGTGCCTTTGGGGGAACTGCGTTGGCCTTTGGTTGTTTCTCAGCAGCAGCCATGTTGGCAAAGCGCAGAGAATACCTTTACCTTGGGGGCTTGCTCTCTTCGGGCGTGTCCATCCTTCTCTGGTTGCGATTTGCTTCTGCCATCTTTGGTGGTTCTGCTTCCCTTTTTGAGTTTGAGGAGGTTGGTATGAATAAGATTTTGGATTTTGGAAGGAAAGCTCTGTTCTACGCCAGGGTTCTTTCCGGCTATGAAGAACGGAGAATCCGAAGCTATCGCTTGCAGGTCGAGAAGCGTATCAAACAGGCAGAAGAGCGGAAGCTGGCTATAAGAAAGCTTCCTGAGCAGACTATTTTGTCAGAGGTTCGCCGTATGGTTGAGGAGATGCAGAATTTAAATAAGAAGCTAGAAGAGACTGAGGCTGCTATTGAAGACTACTTCAAGCCACTCGACCAAGAGGCTCAGAGGATAATGAAAACACAACTTGAAGGAGAGGAGAGAACAATGAAGCAGATGATGAAAACCATGCATGACCAGGCTATGCTTGATATAGCTGAAGAGGAGAGAAAAATAAAAGCACAAATAGTCGACACAAACCAGAAGAACCAAGACCCAAGACCTAATACCCAACATCTGCCACCGCCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

337

Amino Acids

38.0

Weight (kDa)

8.9

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	34 - 175	9.6e-20	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	715
Acc36I	ACCTGC	2 cut(s)	177, 634
AccBSI	CCGCTC	1 cut(s)	676
AccI	GTMKAC	2 cut(s)	120, 948
AciI	CCGC	6 cut(s)	49, 152, 192, 287, 676, 1001
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	73, 751
AcuI	CTGAAG	1 cut(s)	936
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	5 cut(s)	42, 302, 791, 802, 848
AjnI	CCWGG	2 cut(s)	593, 894
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	7 cut(s)	164, 581, 633, 682, 697, 766, 914
AluI	AGCT	7 cut(s)	164, 581, 633, 682, 697, 766, 914
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	767
AoxI	GGCC	3 cut(s)	193, 333, 387
ApeKI	GCWGC	5 cut(s)	155, 290, 407, 410, 782
ApoI	RAATTY	2 cut(s)	73, 751
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	335
BbsI	GAAGAC	2 cut(s)	30, 798
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	5 cut(s)	142, 277, 419, 422, 769
BccI	CCATC	4 cut(s)	101, 114, 482, 512
BceAI	ACGGC	1 cut(s)	714
BciT130I	CCWGG	2 cut(s)	595, 896
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	767
BfaI	CTAG	1 cut(s)	767
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	177, 634
BglI	GCCNNNNNGGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	8 cut(s)	153, 156, 193, 288, 291, 408, 411, 783
BlsI	GCNGC	8 cut(s)	154, 157, 194, 289, 292, 409, 412, 784
Bme1390I	CCNGG	2 cut(s)	595, 896
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	595, 896
BmsI	GCATC	3 cut(s)	181, 363, 735
BpiI	GAAGAC	2 cut(s)	30, 798
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	445, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	595, 896
BseDI	CCNNGG	2 cut(s)	445, 594
BseGI	GGATG	3 cut(s)	227, 354, 474
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	4 cut(s)	417, 693, 768, 836
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	4 cut(s)	554, 755, 869, 935
BseXI	GCAGC	5 cut(s)	142, 277, 419, 422, 769
BshFI	GGCC	3 cut(s)	195, 335, 389
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	767
BsnI	GGCC	3 cut(s)	195, 335, 389
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	84, 328, 360
BspACI	CCGC	6 cut(s)	49, 152, 192, 287, 676, 1001
BspANI	GGCC	3 cut(s)	195, 335, 389
BspCNI	CTCAG	4 cut(s)	416, 694, 769, 835
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	2 cut(s)	177, 634
BspQI	GCTCTTC	1 cut(s)	666
BsrBI	CCGCTC	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	445, 594
BssMI	GATC	3 cut(s)	84, 328, 360
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	595, 896
Bst4CI	ACNGT	2 cut(s)	217, 313
Bst6I	CTCTTC	5 cut(s)	252, 466, 666, 765, 912
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	455, 641, 684
BstDEI	CTNAG	4 cut(s)	403, 702, 777, 822
BstF5I	GGATG	3 cut(s)	227, 354, 474
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	3 cut(s)	87, 331, 363
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	3 cut(s)	84, 328, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 419, 703
BstNI	CCWGG	2 cut(s)	595, 896
BstSCI	CCNGG	2 cut(s)	593, 894
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	5 cut(s)	142, 277, 419, 422, 769
BstV2I	GAAGAC	2 cut(s)	30, 798
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	195, 335, 389
BtsCI	GGATG	3 cut(s)	227, 354, 474
BtsIMutI	CAGTG	2 cut(s)	222, 370
BveI	ACCTGC	2 cut(s)	177, 634
Cac8I	GCNNGC	3 cut(s)	455, 641, 684
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	4 cut(s)	343, 415, 886, 890
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	4 cut(s)	403, 702, 777, 822
DpnI	GATC	3 cut(s)	86, 330, 362
DpnII	GATC	3 cut(s)	84, 328, 360
DraI	TTTAAA	1 cut(s)	756
DrdI	GACNNNNNNGTC	1 cut(s)	715
DseDI	GACNNNNNNGTC	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	5 cut(s)	252, 466, 666, 765, 912
EarI	CTCTTC	5 cut(s)	252, 466, 666, 765, 912
Eco130I	CCWWGG	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	936
EcoRII	CCWGG	2 cut(s)	593, 894
EcoT14I	CCWWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	891
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	4 cut(s)	346, 418, 889, 893
FatI	CATG	4 cut(s)	342, 414, 885, 889
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	120, 948
Fnu4HI	GCNGC	8 cut(s)	153, 156, 193, 288, 291, 408, 411, 783
FokI	GGATG	3 cut(s)	234, 341, 461
Fsp4HI	GCNGC	8 cut(s)	153, 156, 193, 288, 291, 408, 411, 783
FspBI	CTAG	1 cut(s)	767
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	8 cut(s)	153, 156, 193, 288, 291, 408, 411, 783
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	195, 335, 389
HapII	CCGG	1 cut(s)	606
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	346, 418, 889, 893
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	949
HindII	GTYRAC	1 cut(s)	949
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	3 cut(s)	26, 62, 624
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	121, 949
Hpy188I	TCNGA	5 cut(s)	84, 102, 629, 721, 825
Hpy188III	TCNNGA	6 cut(s)	70, 181, 358, 649, 701, 1008
Hpy8I	GTNNAC	2 cut(s)	121, 949
HpyAV	CCTTC	5 cut(s)	19, 28, 488, 567, 842
HpyCH4III	ACNGT	2 cut(s)	217, 313
HpyCH4V	TGCA	5 cut(s)	172, 293, 643, 748, 889
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 419, 703
HpyF3I	CTNAG	4 cut(s)	403, 702, 777, 822
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	346, 418, 889, 893
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	84, 328, 360
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	5 cut(s)	142, 277, 419, 422, 769
LweI	GCATC	3 cut(s)	181, 363, 735
MaeI	CTAG	1 cut(s)	767
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	3 cut(s)	86, 330, 362
MbiI	CCGCTC	1 cut(s)	676
MboI	GATC	3 cut(s)	84, 328, 360
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	73, 751
MluNI	TGGCCA	1 cut(s)	335
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	891
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	3 cut(s)	200, 339, 755
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	595, 896
MvaI	CCWGG	2 cut(s)	595, 896
MwoI	GCNNNNNNNGC	3 cut(s)	161, 419, 703
NdeII	GATC	3 cut(s)	84, 328, 360
NlaIII	CATG	4 cut(s)	346, 418, 889, 893
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	625
PfeI	GAWTC	3 cut(s)	26, 62, 624
PkrI	GCNGC	8 cut(s)	154, 157, 194, 289, 292, 409, 412, 784
Psp6I	CCWGG	2 cut(s)	593, 894
PspGI	CCWGG	2 cut(s)	593, 894
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	947
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	3 cut(s)	200, 339, 755
SatI	GCNGC	8 cut(s)	153, 156, 193, 288, 291, 408, 411, 783
Sau3AI	GATC	3 cut(s)	84, 328, 360
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	2 cut(s)	595, 896
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	3 cut(s)	181, 363, 735
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	317
SmiI	ATTTAAAT	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	73, 751
SsiI	CCGC	6 cut(s)	49, 152, 192, 287, 676, 1001
SspMI	CTAG	1 cut(s)	767
StyD4I	CCNGG	2 cut(s)	593, 894
StyI	CCWWGG	1 cut(s)	445
SwaI	ATTTAAAT	1 cut(s)	756
TaaI	ACNGT	2 cut(s)	217, 313
TaqI	TCGA	4 cut(s)	24, 648, 810, 948
TasI	AATT	2 cut(s)	73, 751
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	3 cut(s)	155, 195, 290
TfiI	GAWTC	3 cut(s)	26, 62, 624
Tru1I	TTAA	3 cut(s)	200, 339, 755
Tru9I	TTAA	3 cut(s)	200, 339, 755
TscAI	CASTG	2 cut(s)	222, 370
TseI	GCWGC	5 cut(s)	155, 290, 407, 410, 782
TspDTI	ATGAA	7 cut(s)	270, 359, 566, 627, 848, 881, 893
TspGWI	ACGGA	2 cut(s)	68, 634
TspRI	CASTG	2 cut(s)	222, 370
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	73, 751
XmiI	GTMKAC	2 cut(s)	120, 948
XspI	CTAG	1 cut(s)	767
Zsp2I	ATGCAT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.