Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Forward (+)

20790514 .. 20793360

Gene Structure 2847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACGCCTTCACCTCCTTCTTCGATTCCCAATCGTCTTCAAGGAACCGCTGGACTTACGAGTCGCTCAAGAATTTCCGTCAGATCTCTCCCATCGTTCAGAACCATCTCAAACTGGTCTACCTCACGCTATGCTGTGCTCTTGTTGGTGCGGCCGCTGGAGCTTACCTGCATCTTATCTGGAACATTGGTGGCCTTTTAACAACTCTTGCCACAGTGGGATGTACTATCTGGTTACTCTCCACCCCTCCCTATGAAGAGAAAAAGAGGGTTTCTCTACTAATGGCGGCTGCAACCTTTCAAGGGGCTACTGTTGGTCCTCTCATTGATCTGGCCATTAACATGAACCCAAGCATCCTGATCAGTGCCTTTGGGGGAACTGCTTTGGCCTTTGGTTGTTTCTCAGCAGCAGCCATGTTGGCAAAGCGCAGAGAATACCTTTACCTTGGGGGCTTGCTCTCTTCGGGCGTGTCCATCCTTCTCTGGTTGCGATTTGCTTCTGCCATCTTTGGTGGTTCTGCTTCCCTTTTTGAGTTTGAGTTGTATTTTGGGCTTATGATTTTCGTGGGCTACATGGTAGTCGACACCCAGGAGATGATCGAGAGGGCACACCTTGGTGATCTGGACTATGTGAAGCATGCCCTAACCCTTTTCACTGATTTCATTGCTGTTTTTGTTCGCATACTCATCATCATGTTGAAGAATGCTGACAAGAATGAGAAGAAGAAGAAAAGGAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

247

Amino Acids

27.38

Weight (kDa)

9.01

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	34 - 232	2.1e-38	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	2 cut(s)	120, 582
AciI	CCGC	4 cut(s)	49, 152, 156, 287
AcoI	YGGCCR	2 cut(s)	153, 333
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	42, 302, 700
AjnI	CCWGG	1 cut(s)	588
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw21I	GWGCWC	1 cut(s)	142
AoxI	GGCC	4 cut(s)	153, 193, 333, 387
ApeKI	GCWGC	3 cut(s)	290, 407, 410
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	4, 629
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	277, 419, 422
BccI	CCATC	4 cut(s)	101, 114, 482, 512
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
BlsI	GCNGC	6 cut(s)	154, 157, 289, 292, 409, 412
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	181, 363
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	445, 588, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	3 cut(s)	445, 588, 613
BseGI	GGATG	3 cut(s)	227, 354, 474
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	610
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	277, 419, 422
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	4 cut(s)	155, 195, 335, 389
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	4 cut(s)	155, 195, 335, 389
Bsp1286I	GDGCHC	2 cut(s)	142, 610
Bsp143I	GATC	5 cut(s)	84, 328, 360, 597, 619
BspACI	CCGC	4 cut(s)	49, 152, 156, 287
BspANI	GGCC	4 cut(s)	155, 195, 335, 389
BspCNI	CTCAG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	445, 588, 613
BssMI	GATC	5 cut(s)	84, 328, 360, 597, 619
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	445, 613
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	217, 313
Bst6I	CTCTTC	2 cut(s)	252, 466
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	455, 639
BstDEI	CTNAG	1 cut(s)	403
BstF5I	GGATG	3 cut(s)	227, 354, 474
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	5 cut(s)	87, 331, 363, 600, 622
BstMBI	GATC	5 cut(s)	84, 328, 360, 597, 619
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 419
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	277, 419, 422
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	4 cut(s)	155, 195, 335, 389
BtsCI	GGATG	3 cut(s)	227, 354, 474
BtsIMutI	CAGTG	3 cut(s)	222, 370, 654
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	455, 639
CciNI	GCGGCCGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	5 cut(s)	343, 415, 574, 638, 694
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	5 cut(s)	86, 330, 362, 599, 621
DpnII	GATC	5 cut(s)	84, 328, 360, 597, 619
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	153, 333
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	252, 466
EarI	CTCTTC	2 cut(s)	252, 466
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	445, 613
Eco47I	GGWCC	1 cut(s)	317
Eco52I	CGGCCG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	2 cut(s)	445, 613
ErhI	CCWWGG	2 cut(s)	445, 613
FaeI	CATG	5 cut(s)	346, 418, 577, 641, 697
FatI	CATG	5 cut(s)	342, 414, 573, 637, 693
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	120, 582
Fnu4HI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
FokI	GGATG	3 cut(s)	234, 341, 461
Fsp4HI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	155, 195, 335, 389
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	346, 418, 577, 641, 697
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	26, 62
HphI	GGTGA	2 cut(s)	4, 629
Hpy166II	GTNNAC	2 cut(s)	121, 583
Hpy188I	TCNGA	2 cut(s)	84, 102
Hpy188III	TCNNGA	5 cut(s)	70, 181, 358, 601, 623
Hpy8I	GTNNAC	2 cut(s)	121, 583
HpyAV	CCTTC	3 cut(s)	19, 28, 488
HpyCH4III	ACNGT	2 cut(s)	217, 313
HpyCH4V	TGCA	2 cut(s)	172, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 419
HpyF3I	CTNAG	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	346, 418, 577, 641, 697
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	84, 328, 360, 597, 619
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	3 cut(s)	277, 419, 422
LweI	GCATC	2 cut(s)	181, 363
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	5 cut(s)	86, 330, 362, 599, 621
MboI	GATC	5 cut(s)	84, 328, 360, 597, 619
MboII	GAAGA	8 cut(s)	13, 30, 269, 453, 712, 733, 736, 739
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	142, 610
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	1 cut(s)	73
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	7 cut(s)	25, 134, 258, 261, 330, 597, 729
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	200, 339
MslI	CAYNNNNRTG	3 cut(s)	341, 615, 692
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	2 cut(s)	51, 158
MspR9I	CCNGG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	2 cut(s)	161, 419
NdeII	GATC	5 cut(s)	84, 328, 360, 597, 619
NlaIII	CATG	5 cut(s)	346, 418, 577, 641, 697
NlaIV	GGNNCC	1 cut(s)	47
NotI	GCGGCCGC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	641
OliI	CACNNNNGTG	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	641
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	6 cut(s)	154, 157, 289, 292, 409, 412
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	3 cut(s)	341, 615, 692
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	200, 339
SatI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
Sau3AI	GATC	5 cut(s)	84, 328, 360, 597, 619
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	2 cut(s)	142, 610
SetI	ASST	8 cut(s)	17, 126, 166, 171, 299, 441, 447, 615
SfaNI	GCATC	2 cut(s)	181, 363
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	3 cut(s)	341, 615, 692
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	641
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	4 cut(s)	49, 152, 156, 287
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	2 cut(s)	445, 613
TaaI	ACNGT	2 cut(s)	217, 313
TaqI	TCGA	3 cut(s)	24, 582, 600
TasI	AATT	1 cut(s)	73
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	3 cut(s)	155, 158, 290
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	200, 339
Tru9I	TTAA	2 cut(s)	200, 339
TscAI	CASTG	3 cut(s)	222, 370, 661
TseI	GCWGC	3 cut(s)	290, 407, 410
TspDTI	ATGAA	3 cut(s)	270, 359, 652
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	3 cut(s)	222, 370, 661
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	2 cut(s)	120, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.