Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Forward (+)

11934923 .. 11937689

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACGCCTTCAACTCCTTCTTCGATTCCCAATCGTCTTCACGGAACCGCTGGACTTACGAGTCGCTCAAGAACTTCCGTCAGATCTCTCCCGTCGTTCAGAACCATCTCAAACTGGTCTACCTTACCCTATGTTGTGCTCTCGTTGGTGCGGCTGCTGGAGCTTACCTGCATCTTATTTGGAACATCGGTGGCCTTCTAACTACTCTTGCCACTGTCGGATGTACTATCTGGTTACTCTCCACACCTACCTATGAAGAGAAAAAGAGACTTTCTCTACTAATGGCGGCTGCAACCTTTCAAGGGGCTACGGTTGGTCCTCTCATTGATCTGGCCATCAACATCAACCCAAGCATCCTGATCAGTGCCTTTGGGGGAACTGCTTTGGCCTTTGGTTGTTTCTCAGCAGCAGCCACGTTGGCGAAGCGCAGAGAATACCTTTATCTTGGGGGCTTGCTCTCTTCAGGCGTGTCCATCCTTCTGTGGTTGCGATTTGTATCTGCCATCTTTGGTGGTTCTGCTTCCCTTTTCGAGTTTGAGCTGTATTTTGGCCTTATGATTTTCGTGGGCTACATGGTAGTTGACACCCAGGAGATGATTGAGAGGGCACACCACGGTGATCTGGACTATGTGAAGCATGCCCTGACCCTTTTCACTGATTTCATTGCTGTTTTTGTTCGCATACTCATCATCATGTTGAAGAATGCTGAAAAGAATGAGAAGAAGAAGAAAAGGAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

248

Amino Acids

27.42

Weight (kDa)

9.01

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	34 - 232	2.9e-39	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	3 cut(s)	49, 152, 287
AcoI	YGGCCR	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	13, 302, 700
AjnI	CCWGG	1 cut(s)	588
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	2 cut(s)	164, 541
AluI	AGCT	2 cut(s)	164, 541
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	262
AoxI	GGCC	4 cut(s)	193, 333, 387, 550
ApeKI	GCWGC	4 cut(s)	155, 290, 407, 410
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	629
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	610
BalI	TGGCCA	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	4 cut(s)	142, 277, 419, 422
BccI	CCATC	4 cut(s)	114, 344, 482, 512
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
BlsI	GCNGC	6 cut(s)	154, 157, 289, 292, 409, 412
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	2 cut(s)	181, 363
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	588, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	588, 613
BseGI	GGATG	3 cut(s)	227, 354, 474
BseJI	GATNNNNATC	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	120
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	4 cut(s)	142, 277, 419, 422
BshFI	GGCC	4 cut(s)	195, 335, 389, 552
BsiHKAI	GWGCWC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	4 cut(s)	195, 335, 389, 552
Bsp1286I	GDGCHC	2 cut(s)	142, 610
Bsp143I	GATC	4 cut(s)	84, 328, 360, 619
BspACI	CCGC	3 cut(s)	49, 152, 287
BspANI	GGCC	4 cut(s)	195, 335, 389, 552
BspCNI	CTCAG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	588, 613
BssMI	GATC	4 cut(s)	84, 328, 360, 619
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	3 cut(s)	217, 313, 617
Bst6I	CTCTTC	2 cut(s)	252, 466
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	455, 639
BstDEI	CTNAG	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	3 cut(s)	227, 354, 474
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	87, 331, 363, 622
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	4 cut(s)	84, 328, 360, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 419
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	4 cut(s)	142, 277, 419, 422
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	4 cut(s)	195, 335, 389, 552
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	227, 354, 474
BtsIMutI	CAGTG	3 cut(s)	213, 370, 654
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	455, 639
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	3 cut(s)	574, 638, 694
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	86, 330, 362, 621
DpnII	GATC	4 cut(s)	84, 328, 360, 619
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	252, 466
EarI	CTCTTC	2 cut(s)	252, 466
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	588
FaeI	CATG	3 cut(s)	577, 641, 697
FaiI	YATR	8 cut(s)	133, 255, 557, 575, 630, 639, 683, 695
FatI	CATG	3 cut(s)	573, 637, 693
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
FokI	GGATG	3 cut(s)	234, 341, 461
Fsp4HI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	195, 335, 389, 552
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	577, 641, 697
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	2 cut(s)	26, 62
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	121, 583
Hpy188I	TCNGA	3 cut(s)	84, 102, 221
Hpy188III	TCNNGA	3 cut(s)	70, 358, 623
Hpy8I	GTNNAC	2 cut(s)	121, 583
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	4 cut(s)	19, 28, 206, 488
HpyCH4III	ACNGT	3 cut(s)	217, 313, 617
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	2 cut(s)	172, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 419
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	577, 641, 697
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	84, 328, 360, 619
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	4 cut(s)	142, 277, 419, 422
LweI	GCATC	2 cut(s)	181, 363
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	4 cut(s)	86, 330, 362, 621
MboI	GATC	4 cut(s)	84, 328, 360, 619
MboII	GAAGA	8 cut(s)	13, 30, 269, 453, 712, 733, 736, 739
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	142, 610
MlsI	TGGCCA	1 cut(s)	335
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	3 cut(s)	330, 597, 729
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MslI	CAYNNNNRTG	2 cut(s)	615, 692
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	2 cut(s)	161, 419
NdeII	GATC	4 cut(s)	84, 328, 360, 619
NlaIII	CATG	3 cut(s)	577, 641, 697
NlaIV	GGNNCC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	641
OliI	CACNNNNGTG	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	641
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	6 cut(s)	154, 157, 289, 292, 409, 412
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	2 cut(s)	615, 692
SatI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
Sau3AI	GATC	4 cut(s)	84, 328, 360, 619
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	2 cut(s)	142, 610
SetI	ASST	9 cut(s)	126, 166, 171, 250, 254, 299, 419, 441, 543
SfaNI	GCATC	2 cut(s)	181, 363
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	2 cut(s)	615, 692
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	641
SsiI	CCGC	3 cut(s)	49, 152, 287
StyD4I	CCNGG	1 cut(s)	588
TaaI	ACNGT	3 cut(s)	217, 313, 617
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	24, 531
TatI	WGTACW	1 cut(s)	224
TauI	GCSGC	2 cut(s)	155, 290
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	3 cut(s)	220, 370, 661
TseI	GCWGC	4 cut(s)	155, 290, 407, 410
TspDTI	ATGAA	2 cut(s)	270, 652
TspGWI	ACGGA	2 cut(s)	58, 68
TspRI	CASTG	3 cut(s)	220, 370, 661
VpaK11BI	GGWCC	1 cut(s)	317
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.