Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8306939.1

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Reverse (-)

233 .. 745

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8306939.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgttggcaaagcgcagagaatacctttaccttgggggcttgctctcttcgggcgtgtccatccttctctggttgcgatttgcttctgccatctttggtggttctgcttccctttttgagtttgagttgtattttgggcttatgattttcgtgggctacatggtagtcgacacccaggagatgatcgagagggcacacattggtgatctggactatgtgaagcatgccctaacccttttcactgatttcattgctgtttttgttcgcatactcatcatcatgttgaagaatgctgacaagaatgagaagaagaagaaaaggagggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

109

Amino Acids

12.59

Weight (kDa)

9.26

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	174
AleI	CACNNNNGTG	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	196
BccI	CCATC	2 cut(s)	68, 98
BciT130I	CCWGG	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	31, 174
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	31, 174
BseGI	GGATG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	249
BseSI	GKGCMC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	183, 205
BsrDI	GCAATG	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	31, 174
BssMI	GATC	2 cut(s)	183, 205
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	41, 225
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	2 cut(s)	186, 208
BstMBI	GATC	2 cut(s)	183, 205
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	41, 225
CfoI	GCGC	1 cut(s)	15
CviAII	CATG	3 cut(s)	160, 224, 280
CviJI	RGCY	3 cut(s)	39, 139, 156
CviKI_1	RGCY	3 cut(s)	39, 139, 156
DpnI	GATC	2 cut(s)	185, 207
DpnII	GATC	2 cut(s)	183, 205
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	163, 227, 283
FaiI	YATR	6 cut(s)	143, 161, 216, 225, 269, 281
FatI	CATG	3 cut(s)	159, 223, 279
FblI	GTMKAC	1 cut(s)	168
FokI	GGATG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	163, 227, 283
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	187, 209
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	163, 227, 283
HspAI	GCGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	183, 205
LpnPI	CCDG	4 cut(s)	55, 161, 188, 194
MalI	GATC	2 cut(s)	185, 207
MboI	GATC	2 cut(s)	183, 205
MboII	GAAGA	5 cut(s)	39, 298, 319, 322, 325
MhlI	GDGCHC	1 cut(s)	196
MnlI	CCTC	2 cut(s)	183, 315
MslI	CAYNNNNRTG	2 cut(s)	201, 278
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	183, 205
NlaIII	CATG	3 cut(s)	163, 227, 283
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
RseI	CAYNNNNRTG	2 cut(s)	201, 278
SalI	GTCGAC	1 cut(s)	167
Sau3AI	GATC	2 cut(s)	183, 205
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	2 cut(s)	27, 33
SmiMI	CAYNNNNRTG	2 cut(s)	201, 278
SphI	GCATGC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	2 cut(s)	168, 186
TscAI	CASTG	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	247
XceI	RCATGY	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.