Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Forward (+)

22327573 .. 22329314

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG226900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGACGCCTTCACCTCCTTCTTCGATTCCCAATCGTCTTCAAGGAACCGCTGGACTTACGAGTCGCTCAAGAATTTCCGTCAGATCTCTCCCGTCGTTCAGAATCATCTCAAACTGGTCTACCTCACGCTATGCTGTGCTCTCGTTGGTGCGGCTGCTGGAGCTTACCTGCATCTTATCTGGAACATTGGTGGCCTTTTAACAACTCTGGCCACAGTGGGATGTACTATCTGGTTACTCTCCACCCCTCCCTATGAAGAGAAAAAGAGGGTTTCTCTACTAATGGCGGCTGCAACCTTTCAAGGGGCTACTGTTGGTCCTCTTATTGATCTGGCCATTAACATGAACCCAAGCATCCTGATCAGTGCCTTTGGGGGAACTGCTTTGGCCTTTGGTTGTTTCTCAGCAGCAGCCATGTTGGCAAAGCGCAGAGAATACCTTTACCTTGGGGGCTTGCTCTCTTCGGGCGTGTCCATCCTTCTCTGGTTGCGATTTGCTTCTGCCATCTTTGGTGGTTCAGCTTCCCTTTTTGAGTTTGAGGTAATAAATCATAATGTACTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

188

Amino Acids

20.37

Weight (kDa)

8.75

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	34 - 175	2.4e-20	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	3 cut(s)	49, 152, 287
AcoI	YGGCCR	2 cut(s)	210, 333
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	226, 558
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	42, 302
AluBI	AGCT	2 cut(s)	164, 521
AluI	AGCT	2 cut(s)	164, 521
Alw21I	GWGCWC	1 cut(s)	142
AoxI	GGCC	4 cut(s)	193, 210, 333, 387
ApeKI	GCWGC	4 cut(s)	155, 290, 407, 410
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	317
BalI	TGGCCA	2 cut(s)	212, 335
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	4 cut(s)	142, 277, 419, 422
BccI	CCATC	2 cut(s)	482, 512
BclI	TGATCA	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
BlsI	GCNGC	6 cut(s)	154, 157, 289, 292, 409, 412
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	2 cut(s)	181, 363
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	227, 354, 474
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	142, 277, 419, 422
BshFI	GGCC	4 cut(s)	195, 212, 335, 389
BsiHKAI	GWGCWC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	303
BsnI	GGCC	4 cut(s)	195, 212, 335, 389
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	84, 328, 360
BspACI	CCGC	3 cut(s)	49, 152, 287
BspANI	GGCC	4 cut(s)	195, 212, 335, 389
BspCNI	CTCAG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	84, 328, 360
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	445
Bst4CI	ACNGT	2 cut(s)	217, 313
Bst6I	CTCTTC	2 cut(s)	252, 466
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	455
BstDEI	CTNAG	1 cut(s)	403
BstF5I	GGATG	3 cut(s)	227, 354, 474
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	3 cut(s)	87, 331, 363
BstMBI	GATC	3 cut(s)	84, 328, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 419
BstV1I	GCAGC	4 cut(s)	142, 277, 419, 422
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	4 cut(s)	195, 212, 335, 389
BtsCI	GGATG	3 cut(s)	227, 354, 474
BtsIMutI	CAGTG	2 cut(s)	222, 370
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	455
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	225, 557
CviAII	CATG	2 cut(s)	343, 415
CviQI	GTAC	2 cut(s)	225, 557
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	3 cut(s)	86, 330, 362
DpnII	GATC	3 cut(s)	84, 328, 360
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	210, 333
Eam1104I	CTCTTC	2 cut(s)	252, 466
EarI	CTCTTC	2 cut(s)	252, 466
Eco130I	CCWWGG	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	2 cut(s)	346, 418
FaiI	YATR	5 cut(s)	133, 255, 344, 416, 552
FatI	CATG	2 cut(s)	342, 414
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
FokI	GGATG	3 cut(s)	234, 341, 461
Fsp4HI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	4 cut(s)	195, 212, 335, 389
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	346, 418
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	26, 62, 103
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	84, 102
Hpy188III	TCNNGA	3 cut(s)	70, 181, 358
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	19, 28, 488
HpyCH4III	ACNGT	2 cut(s)	217, 313
HpyCH4V	TGCA	2 cut(s)	172, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 419
HpyF3I	CTNAG	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	346, 418
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	84, 328, 360
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	4 cut(s)	142, 277, 419, 422
LweI	GCATC	2 cut(s)	181, 363
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	3 cut(s)	86, 330, 362
MboI	GATC	3 cut(s)	84, 328, 360
MboII	GAAGA	4 cut(s)	13, 30, 269, 453
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	2 cut(s)	212, 335
MluCI	AATT	1 cut(s)	73
MluNI	TGGCCA	2 cut(s)	212, 335
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	25, 134, 258, 261, 330, 532
Mox20I	TGGCCA	2 cut(s)	212, 335
MscI	TGGCCA	2 cut(s)	212, 335
MseI	TTAA	2 cut(s)	200, 339
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	2 cut(s)	212, 335
MspA1I	CMGCKG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	161, 419
NdeII	GATC	3 cut(s)	84, 328, 360
NlaIII	CATG	2 cut(s)	346, 418
NlaIV	GGNNCC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	26, 103
PkrI	GCNGC	6 cut(s)	154, 157, 289, 292, 409, 412
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	2 cut(s)	226, 558
RsaNI	GTAC	2 cut(s)	225, 557
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	200, 339
SatI	GCNGC	6 cut(s)	153, 156, 288, 291, 408, 411
Sau3AI	GATC	3 cut(s)	84, 328, 360
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	9 cut(s)	17, 126, 166, 171, 299, 441, 447, 523, 543
SfaNI	GCATC	2 cut(s)	181, 363
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	3 cut(s)	49, 152, 287
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	217, 313
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	73
TatI	WGTACW	2 cut(s)	224, 556
TauI	GCSGC	2 cut(s)	155, 290
TfiI	GAWTC	2 cut(s)	26, 103
Tru1I	TTAA	2 cut(s)	200, 339
Tru9I	TTAA	2 cut(s)	200, 339
TscAI	CASTG	2 cut(s)	222, 370
TseI	GCWGC	4 cut(s)	155, 290, 407, 410
TspDTI	ATGAA	2 cut(s)	270, 359
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	222, 370
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.