Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012793

Physical Location & Seq

Genomic Coordinates Forward (+)

4170964 .. 4173003

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04550.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGACGCCTTCACATCTTTCTTCGATTCCCAAACGTCGTCGAGAAACCGCTGGGCCTCTGAGTCTCTCAAGAATTTCCGTCAGATCTCTCCCGTCGTTCAGAATCATCTCAAATTGGTTTACCTCACTCTATGCTGTGCCCTCATTGCATCAGCTGCTGGAGCCTACCTCCATATCCTGTGGAACATCGGAGGCATTATCACCACTCTTTCTTGCATGGGATGCATGGTGTGGTTACTCTGCACACCAACCTATCAAGAGCAGAAGAAGAGGGTTTCTCTCCTGATGGCTGCTGGTCTCTTTGAGGGGGCTACGATTGGGCCTTTAATTGAACTGGCCATTGAGATTAACCCAAGTGTCTTGATCAGTGCATCTGGAGGAACTGCTCTGGCCTTTGGTTGTTTCTCATCAGCAGCCATGTTGGCAAGGCGCCGGGAATACCTTTACCTGGGGGGTTTGCTTTCTTCTGGCCTTTCTATGCTAATCTGGTTGCACTTTGCTGGTTCTATCTTTGGGGGTTCTGCAGCACTTTTCAAGTTCGAGCTGTATTTCGGGCTTTTGATTTTCGTGGGCTACATGGTAGTCGACACCCAGGAAATGATTGAGAAGGCACACCATGGTGACCTGGACTATGTCAAGCATGCCCTGACCCTTTTCACCGACTTCGTTGCCGTGTTTGTCCGTATACTGATTATCATGTTGAAGAACTCGGCTGAGAGGAATGAGAGGAAGAAGAAAAGAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006983 GO:0006984 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009607 GO:0009628 GO:0009987 GO:0010035 GO:0010941 GO:0012505 GO:0019752 GO:0023052 GO:0031967 GO:0031975 GO:0032787 GO:0033554 GO:0034976 GO:0042221 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060548 GO:0065007 GO:0071216 GO:0071704 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bax1-I

Protein Analysis

250

Amino Acids

27.63

Weight (kDa)

8.89

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47120
fragaria_vesca	FvH4_5g20220
malus_domestica	MD04G1051800.v1.1 MD06G1048300.v1.1
prunus_persica	Prupe.5G058500_v2.0.a1
pyrus_communis	pycom04g04550 pycom06g04130
rosa_chinensis	RchiOBHm_Chr7g0205291
rosa_laevigata	RLG00000003390
rosa_multiflora	Rmu_co8306939.1_g000001 Rmu_sc0001072.1_g000018 Rmu_sc0007852.1_g000001
rosa_roxburghii	Rroxscaffold_3G00252500
rosa_rugosa	Rorug07G0089500.1
rosa_samantha	Rh7BG216000 Rh7CG232900 Rh7DG226900
rosa_wichuraiana	Rw7G019020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	429
AccI	GTMKAC	2 cut(s)	585, 685
AciI	CCGC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	73
AcyI	GRCGYC	2 cut(s)	6, 430
AfiI	CCNNNNNNNGG	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	332, 535, 703
AjnI	CCWGG	3 cut(s)	447, 591, 624
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	2 cut(s)	155, 544
AluI	AGCT	2 cut(s)	155, 544
Alw26I	GTCTC	2 cut(s)	69, 302
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	5 cut(s)	54, 320, 336, 390, 469
ApeKI	GCWGC	4 cut(s)	155, 290, 413, 524
ApoI	RAATTY	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	54, 320
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	193, 632, 649
BaeGI	GKGCMC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	142, 277, 425, 536
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	656
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	3 cut(s)	449, 593, 626
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	2 cut(s)	69, 302
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	433
BglI	GCCNNNNNGGC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	4 cut(s)	156, 291, 414, 525
BlsI	GCNGC	4 cut(s)	157, 292, 415, 526
Bme1390I	CCNGG	4 cut(s)	434, 449, 593, 626
BmgT120I	GGNCC	2 cut(s)	54, 320
BmiI	GGNNCC	2 cut(s)	163, 431
BmrFI	CCNGG	4 cut(s)	434, 449, 593, 626
BmsI	GCATC	3 cut(s)	158, 212, 380
BplI	GAGNNNNNCTC	4 cut(s)	153, 185, 262, 294
BpmI	CTGGAG	2 cut(s)	180, 396
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	2 cut(s)	6, 430
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	448, 591, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	3 cut(s)	449, 593, 626
BseDI	CCNNGG	3 cut(s)	448, 591, 616
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	51, 705
BseNI	ACTGG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	142, 277, 425, 536
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	5 cut(s)	56, 322, 338, 392, 471
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	2 cut(s)	69, 302
BsnI	GGCC	5 cut(s)	56, 322, 338, 392, 471
Bso31I	GGTCTC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	84, 363
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	5 cut(s)	56, 322, 338, 392, 471
BspCNI	CTCAG	2 cut(s)	52, 706
BspLI	GGNNCC	2 cut(s)	163, 431
BspMAI	CTGCAG	1 cut(s)	526
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	3 cut(s)	448, 591, 616
BssMI	GATC	2 cut(s)	84, 363
BssNAI	GTATAC	1 cut(s)	686
BssNI	GRCGYC	2 cut(s)	6, 430
BssT1I	CCWWGG	1 cut(s)	616
Bst1107I	GTATAC	1 cut(s)	686
Bst2UI	CCWGG	3 cut(s)	449, 593, 626
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	2 cut(s)	6, 430
BstAPI	GCANNNNNTGC	2 cut(s)	155, 222
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	2 cut(s)	60, 714
BstDSI	CCRYGG	1 cut(s)	616
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	87, 366
BstMAI	GTCTC	2 cut(s)	69, 302
BstMBI	GATC	2 cut(s)	84, 363
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 155, 161, 222, 422
BstNI	CCWGG	3 cut(s)	449, 593, 626
BstNSI	RCATGY	1 cut(s)	644
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	4 cut(s)	432, 447, 591, 624
BstSFI	CTRYAG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	4 cut(s)	142, 277, 425, 536
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZ17I	GTATAC	1 cut(s)	686
BsuRI	GGCC	5 cut(s)	56, 322, 338, 392, 471
BtgI	CCRYGG	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	54, 320
CseI	GACGC	1 cut(s)	14
CviAII	CATG	7 cut(s)	217, 226, 418, 577, 617, 641, 697
DdeI	CTNAG	2 cut(s)	60, 714
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	2 cut(s)	86, 365
DpnII	GATC	2 cut(s)	84, 363
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	302
Eco91I	GGTNACC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	447, 591, 624
EcoT14I	CCWWGG	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	227
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	7 cut(s)	220, 229, 421, 580, 620, 644, 700
FatI	CATG	7 cut(s)	216, 225, 417, 576, 616, 640, 696
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	2 cut(s)	585, 685
Fnu4HI	GCNGC	4 cut(s)	156, 291, 414, 525
FokI	GGATG	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	156, 291, 414, 525
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	156, 291, 414, 525
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	180, 396
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	5 cut(s)	56, 322, 338, 392, 471
HapII	CCGG	1 cut(s)	433
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	2 cut(s)	6, 430
Hin1II	CATG	7 cut(s)	220, 229, 421, 580, 620, 644, 700
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	3 cut(s)	26, 62, 103
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	3 cut(s)	193, 632, 649
Hpy166II	GTNNAC	3 cut(s)	121, 586, 686
Hpy188I	TCNGA	4 cut(s)	61, 84, 102, 191
Hpy188III	TCNNGA	6 cut(s)	42, 70, 257, 283, 361, 375
Hpy8I	GTNNAC	3 cut(s)	121, 586, 686
Hpy99I	CGWCG	3 cut(s)	40, 43, 98
HpyAV	CCTTC	3 cut(s)	19, 601, 735
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	149, 216, 225, 243, 371, 493, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 155, 161, 222, 422
HpyF3I	CTNAG	2 cut(s)	60, 714
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	2 cut(s)	6, 430
Hsp92II	CATG	7 cut(s)	220, 229, 421, 580, 620, 644, 700
HspAI	GCGC	1 cut(s)	430
KasI	GGCGCC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	84, 363
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	4 cut(s)	142, 277, 425, 536
LweI	GCATC	3 cut(s)	158, 212, 380
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	234, 620
MalI	GATC	2 cut(s)	86, 365
MboI	GATC	2 cut(s)	84, 363
MboII	GAAGA	7 cut(s)	13, 277, 280, 456, 715, 742, 745
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	3 cut(s)	73, 113, 327
MluNI	TGGCCA	1 cut(s)	338
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	338
Mph1103I	ATGCAT	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	2 cut(s)	326, 348
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	51, 155
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	4 cut(s)	434, 449, 593, 626
MvaI	CCWGG	3 cut(s)	449, 593, 626
MwoI	GCNNNNNNNGC	5 cut(s)	146, 155, 161, 222, 422
NarI	GGCGCC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	616
NdeII	GATC	2 cut(s)	84, 363
NlaIII	CATG	7 cut(s)	220, 229, 421, 580, 620, 644, 700
NlaIV	GGNNCC	2 cut(s)	163, 431
NmeAIII	GCCGAG	1 cut(s)	689
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	644
OliI	CACNNNNGTG	1 cut(s)	618
PaeI	GCATGC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	26, 103
PflFI	GACNNNGTC	1 cut(s)	632
PkrI	GCNGC	4 cut(s)	157, 292, 415, 526
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	3 cut(s)	447, 591, 624
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	447, 591, 624
PspN4I	GGNNCC	2 cut(s)	163, 431
PspPI	GGNCC	2 cut(s)	54, 320
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	84
PsyI	GACNNNGTC	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	618
SalI	GTCGAC	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	326, 348
SatI	GCNGC	4 cut(s)	156, 291, 414, 525
Sau3AI	GATC	2 cut(s)	84, 363
Sau96I	GGNCC	2 cut(s)	54, 320
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	4 cut(s)	434, 449, 593, 626
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	9 cut(s)	38, 126, 157, 171, 254, 444, 450, 546, 627
SfaNI	GCATC	3 cut(s)	158, 212, 380
SfcI	CTRYAG	1 cut(s)	522
SfoI	GGCGCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	3 cut(s)	73, 113, 327
SsiI	CCGC	1 cut(s)	49
SspDI	GGCGCC	1 cut(s)	429
StyD4I	CCNGG	4 cut(s)	432, 447, 591, 624
StyI	CCWWGG	1 cut(s)	616
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	24, 41, 540, 585
TasI	AATT	3 cut(s)	73, 113, 327
TfiI	GAWTC	2 cut(s)	26, 103
Tru1I	TTAA	2 cut(s)	326, 348
Tru9I	TTAA	2 cut(s)	326, 348
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	4 cut(s)	155, 290, 413, 524
Tsp45I	GTSAC	1 cut(s)	620
TspGWI	ACGGA	2 cut(s)	68, 671
TspRI	CASTG	1 cut(s)	373
Tth111I	GACNNNGTC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	2 cut(s)	585, 685
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.