AT5G47690

Sister chromatid cohesion protein PDS5 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009376
Physical Location & Seq
Forward (+)
19317668 .. 19327431
9764 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47690.3

Sequence Viewer

Length: 4818 bp
ATGGCTCAGAAGCCGGAGGAACAGTTGAAAGAGCTGGGATCGAAGCTTGACCTAGCTCCTGTTTCTAAAGATTCATTGCTCAAACTCTTAAAGGAAGCTGCTGTTTGTCTTTCTGAGTTGGAGCAGTCTCCACCACCTGCAGTGCTCAAGTCCATTCAGCCTTTTCTTGATGCAGTTATTAAACCTGAAATTCTCAACCATCAAGACAAGGATGTCAAGCTTCTTGTTGCAAGCTGCGTTTCTGAGATAACTCGTATTACAGCACCTGAAGCGCCTTACAGTGATAATATTATGAAGGATATTTTTCAACTAATTGTGAGCGCTTTTGCTGGGTTGAATGATGTCAGTGGTCCATCATTTGGAAGGAGGGTTCTCATTTTAGAAACGGTTGCAAAGTACAGGTCATGTGTAGTGATGTTGGATCTTGAATGTGATGATCTGGTGAAAGAAGTGTTTACTACATTTCTTGATGTTGCTAGAGATGACCATCCGGAGATTGTTTTCTCATCAATGCAAAATATAATGATTGTTCTTTTAGAAGAAAGCGAAGATGTGCAAGAGCACCTTTTACTAATTTTACTCTCTAAATTGGGCCGCAATAGAAGTGACGTTAGAGATGCTGCAAGAAGACTTGCTATGAAAGTCATAGAGCATTGTGCGCCCAAAGTTGAATCTGACATAAAGCAGTTCCTTATCTCTTCAATGTCTGGAGATAGCCGATTTTCCAGCAGTCAAATTGACTACCATGAGGTTATCTATGATTTGTACCGCTGTGCTCCTCAGGCCCTATCTGGAGTTGCACCATATCTCACTGGAGAGCTTTTGGCGGATAAACTGGAAACTCGTTTGAAAGTGGTTGGATTGGTTGGAGAGTTGTTTTCCTTGCCTGGACGTGTCATCTCTGAAGAGTTCGATTCAATTTTTTTGGAGTTTCTGAAAAGGCTGACCGATAGGGTAGTTGAAGTTAGGATGGCCATCCTTGACCATATTAAGGACTGTTTGCTCTCAGATCCTTTGAGAGCTGAGGCTTCTCAAATTATATCTGCTCTCTGTGACCGGCTCTTGGATTATGATGAGAATATCCGCAAACAAGTTGTTGCTGTTATTTGTGATGTGTCTGTGAGTGCATTGACGTCGATTCCAGTTGACACTATGAAGTTAGTTGCTGAACGGCTTCGTGACAAAGCTATACTCGTAAAAACATACACAATGGAAAGGTTGACTGAGTTGTTCCGGGTATATTGCTTACGGTGTGCTGATGGGAAGGTAGACACTGGCGATTTTAATTGGATTCCTGGAAAAATCTTGAGATGTCTTTATGACAAAGATTTCAGGTCAGATACAATTGAGTATATTCTATGCAGTTCACTGTTTCCTAGTGATTTCTCAGTAAGAGATAAAGTTAAGCATTGGATACAAATCTTTTCCGGGTTTGACAAAGTGGAGACCAAAGCTTTTGAGAAGATACTGGAGCAAAGACAAAGGATACAACAAGAAATGCAAAGATATTTGTCAATCAAGCAGACACAACAGACTGCTGATGCTCCTGAGATTCAGAAAAAGATCCTATTTGGATTCAGAGTTATGTCACGTGCATTTTCTGACCCCCCAAAGACTGAGCAAAACTTTTTAATTCTTGATCAACTGAAAGATGCTAATATCTGGAAGATTTTGACTAATCTGCTTGATCCCAACACTAGCATAACGCAAGCATCCAGGATTCGGGATGATATGCTTAAAATACTCTCTGAGAAGCATTCTCTCTATGATTTTCTCAGCACTCTCTCCATAAAGTGTTCTTATCTGCTATTCAGTAAGGAGTATGTGAAAGAGATATTAGCGGAAGTATCTGTTAGAAAGTCTTCTAAAAATACATTGGGGATCCAACCTTGCATGGACTTCTTAGGGCTCCTGGCATGTTTCTGTCCATCATTGTTTGATGGCGCTGAAGAAGAACTGATAAGTTTCCTTAAAGATGACGATGAAATGATGAAGGAGGGTACTCTAAAAATTCTGGCAAAAGCAGGTGGAACTATTCGGGAGAATCTCATTGTTTTAGCAAGTTCTGTGGACCTTTTACTGGAGAGGATTTGTGTAGAAGGAAACCGCAAGCAGGCTAAGTATGCTGTGCATGCGCTAGCATCAATAACAAAGGATGATGGCCTGAAGTCGCTCTCTGTTCTATACAAGAGACTTGTGGACATGCTGGAGGACAAGAGATATCAGCCGGCTGTTCTTCAGTGTCTTGGATGCATAGCACAGATTGCGATGCCAGTCTATGAGACTAGAGAAAGCGAAGTAGTTGAGTTTATTAGAAGCAAAATCCTAAAGCTCAAAAGTGAAACTGTGGATGACAAAAAATTGTCATGGGATGACAAAAGTGAAATTTGTCAACTGAAGATATATGGGATCAAGACGTTGGTTAAGAGCTATTTACCTTTTAAGGATGCTCAACTTCGTGCGGGTGTTGATGATCTTCTTGGAATACTAAAAAACATTCTTTCCTTTGGCGAAGTATCCGAAGATCTAGAATCAAGTTCTGTTGACAAGGCCCATTTGAGACTTGCTGCTGCAAAGGCTGTCCTCCGCCTTTCTAGACATTGGGATGATAAGATACCTATTGAGATCTTCCATTTAACTTTAAAAACCCCTGAGATACCATTTCCTACAGCTAAGAAAATATTCCTTGGGAAAGTTCACCAGTATGTAAAGGATCGGGTTTTGGAGATGAAGTATGCCTGTTCATTCCTATTTGATATCACTGGATCAAATGTTCTCGAATCAGAGGAGGATAAACACAACCTAGCTGATATCATACAGCATTCTTATCAAACAAAAGTGCGGAAAATTTCGGCTCAGACTGATGCAAATTCAGTTACTCTCTACCCTCATCATATCCTCCCTTATCTGGTTCATGCACTTGCGCATCATTCTTGTCCTGATGTCGAGAAATGCAAAGACGTGAAGGAATATGAAATGATATATCGCCAATTATACTTGATCATTTCTATGTTGCTCCATAAAGAGGAAGACGGGAAGACTGAAGATATTGATAAGGAACGTGAGTACGTTCCCACCATTATTCTTATCTTCCATAGTATAAAACAGTCAGAAGATGTCACTGATGCAACAAAGTCAAAGAACTCACATGCGATCTGTGAGCTTGGGCTGTCAATAATCAATCACTTAACTCAGAAAGAGCCTGATCTACAAGGGGAAATCACACCTGTATCGCTGCCTCCGACGCTGTACAAACCTTCTGAAAAAGTTGAAGGAGACAAGTCTCAGGTAGGTGAAGAAAAATTGTGGCTAGCTGATGAGACTGTCCTGTTACACTTCAGGGCTCTCAAGTTGGAGAGTCATGCTGATGCATCTGTGATCCCCCAAACTTCAGAAAATGAGGTTATGATTGATGGGGAAAGTGATGGAAATGAAATTCCTCTGGGTAAAATAGTAGAGCGTTTGAGAGCTCAGGGAACCAAGACTAGAAAGGGCAAAAAGAATAAATCTGTACCAGCTGAAGATGAGAATGGTAAAAATGATGTCGATGTTTTGAAGATGGTGAGGGAGATAAATCTAGATCACTTACAAATGCTGGATAAATTCGAATCCAGTAATGGACACAAACATTCCCCTAGTGAGAGAGCAGAGATATGTCAAAGAGATCAGAAGGGTAACAAAAGGAATGTTGGTGATGCAACATCAGTAGTTTCAGTCCCTAAGCGCCGGAGATCATCTTCTGGCCATAGTCCTTACAAGTTCTCAAACAGTGGTCCTAAAGTTCAACTGAAAGCTTCTGAAGATGAGTTGCATCTAGAGAGTGACATGGACAAAAATGTCTCTTTGGACTCGCACGATGAAAATTCTGACCAAGAGAAAATGTTAGAAAGCATCTCTCCCCGGAAGAGAAAGAAAAGCTTATCATCAAAATTAAAGATTACAGAATCTGATTGGGCTCTCACCGATGTGGAGAGGAGTAGGTCAGCAGGAGGTGGTGATAGCAAATTAAAGTCTGCCTCTGGATCAATGAAAAAGCGAAAAAACGTGTCAGGACTGGCGAAGTGCTCTACAAAGGAAAATAAATTGGTAAATGATGAACTGATCGGTTGCCGAATAGAAGTTTGGTGGCCTATGGATAAACGGTTTTATGAAGGGACAGTGAAATCTTATGATTCCACAAAACAGAGACATGTGATACTTTATGAGGATGGAGATGTTGAAGTACTTAACCTAAAGAAAGAACAGTGGGAGCTCATAGACACTGGTGGAAAGACCGCAAAGAAGTCCAGAACATCAAAGGGAAATTCGAAGAAGAAAAGATCTTCTGGAAGTAAGCCTAAGAATCCGGATGGCGTACAGAGGGATGAAGACCCAGTTACTACTACGCCAAAAGGAAAAAGAACTCCAAAGAAAAACTTAAAACAGTTACACCCAAAAGATACACCAAAAAGTCTTTCTTTAGAACATGAGAAAGTAGAGAGCAGAAACAAGAAAAGACGATCTTCTGCTTTGCCAAAGACAGAATATAGTGGGGAGGCTGGCGAAGAAAAATCAGAGTCTGAAGGAAAGTCGTTGAAAGAAGGTGAGGATGATGAGGAAGTTGTAAACAAGGAAGAAGATTTACAGGAGGCAAAAACAGAGTCGAGTGGGGACGCTGAGGGGAAAGAAGCTGAACATGACGACTCAGATACTGAAGGGAAACAAGAAAACAATGAAATGGAGAGAGAAGCTGAAGAGAATGCTGAGACTTCTGACAATGAGACTCTTGGAGCTTGGAAGAGTAAAGTGGGTAAGTCAATCTCGAGGACAGCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1605

Amino Acids

181.21

Weight (kDa)

5.9

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDS5 PF20168 24 - 1085 7.5e-242 Sister chromatid cohesion protein PDS5 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 145, 2015
AasI GACNNNNNNGTC 2 cut(s) 212, 3836
AatII GACGTC 1 cut(s) 1136
Acc16I TGCGCA 1 cut(s) 2925
Acc36I ACCTGC 2 cut(s) 145, 2015
AccB7I CCANNNNNTGG 1 cut(s) 359
AccI GTMKAC 1 cut(s) 1269
AccIII TCCGGA 2 cut(s) 490, 4345
AcoI YGGCCR 2 cut(s) 972, 3742
AcsI RAATTY 9 cut(s) 189, 2010, 2385, 2847, 2869, 3435, 3602, 3862, 4303
AcvI CACGTG 1 cut(s) 1592
AcyI GRCGYC 1 cut(s) 1133
AfaI GTAC 8 cut(s) 398, 767, 2002, 3068, 3251, 3513, 4224, 4356
AfeI AGCGCT 1 cut(s) 322
AfiI CCNNNNNNNGG 8 cut(s) 359, 991, 1063, 1722, 2080, 2113, 2908, 3025
AflIII ACRYGT 3 cut(s) 892, 4044, 4189
AjiI CACGTC 2 cut(s) 893, 2962
AjnI CCWGG 4 cut(s) 886, 1294, 1715, 1911
AjuI GAANNNNNNNTTGG 4 cut(s) 4105, 4137, 4438, 4470
AleI CACNNNNGTG 1 cut(s) 3965
AloI GAACNNNNNNTCC 4 cut(s) 354, 386, 2757, 2789
Alw21I GWGCWC 6 cut(s) 147, 564, 778, 3472, 4067, 4254
AlwNI CAGNNNCTG 4 cut(s) 266, 3947, 4559, 4691
Ama87I CYCGRG 1 cut(s) 4801
Aor13HI TCCGGA 2 cut(s) 490, 4345
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 7 cut(s) 592, 783, 972, 2161, 2550, 3742, 4127
ApeKI GCWGC 6 cut(s) 98, 234, 620, 2567, 2570, 3235
ApoI RAATTY 9 cut(s) 189, 2010, 2385, 2847, 2869, 3435, 3602, 3862, 4303
ArsI GACNNNNNNTTYG 4 cut(s) 386, 418, 4625, 4657
Asp700I GAANNNNTTC 3 cut(s) 1173, 1861, 2681
AspLEI GCGC 7 cut(s) 274, 323, 661, 1946, 2137, 2926, 3726
AspS9I GGNCC 6 cut(s) 350, 592, 784, 2071, 2551, 3773
AsuC2I CCSGG 3 cut(s) 1235, 1429, 3901
AsuHPI GGTGA 8 cut(s) 454, 2690, 3305, 3574, 3704, 3952, 4007, 4595
AsuII TTCGAA 2 cut(s) 3606, 4307
AsuNHI GCTAGC 2 cut(s) 2137, 3310
AvaI CYCGRG 1 cut(s) 4801
AvaII GGWCC 3 cut(s) 350, 2071, 3773
AxyI CCTNAGG 1 cut(s) 780
BaeI ACNNNNGTAYC 2 cut(s) 3213, 3246
BalI TGGCCA 2 cut(s) 974, 3744
BamHI GGATCC 1 cut(s) 1881
BanII GRGCYC 5 cut(s) 1911, 3346, 3472, 3958, 4254
BarI GAAGNNNNNNTAC 2 cut(s) 4605, 4637
BbrPI CACGTG 1 cut(s) 1592
BbsI GAAGAC 5 cut(s) 634, 1854, 3036, 3044, 4374
Bbv12I GWGCWC 6 cut(s) 147, 564, 778, 3472, 4067, 4254
BbvCI CCTCAGC 2 cut(s) 1023, 4656
BbvI GCAGC 6 cut(s) 85, 221, 607, 2554, 2557, 3222
BceAI ACGGC 1 cut(s) 1187
BcgI CGANNNNNNTGC 2 cut(s) 1116, 1150
BciT130I CCWGG 4 cut(s) 888, 1296, 1717, 1913
BciVI GTATCC 3 cut(s) 1407, 1479, 2527
BclI TGATCA 2 cut(s) 1639, 3000
BcnI CCSGG 3 cut(s) 1235, 1429, 3901
BfmI CTRYAG 2 cut(s) 138, 2667
BfoI RGCGCY 4 cut(s) 275, 324, 1947, 3727
BfuAI ACCTGC 2 cut(s) 145, 2015
BfuI GTATCC 3 cut(s) 1407, 1479, 2527
BglII AGATCT 3 cut(s) 2524, 2625, 4319
BisI GCNGC 7 cut(s) 99, 235, 595, 621, 2568, 2571, 3236
BlsI GCNGC 7 cut(s) 100, 236, 596, 622, 2569, 2572, 3237
BmcAI AGTACT 1 cut(s) 4224
Bme1390I CCNGG 7 cut(s) 888, 1235, 1296, 1429, 1717, 1913, 3901
Bme18I GGWCC 3 cut(s) 350, 2071, 3773
BmeT110I CYCGRG 1 cut(s) 4801
BmgBI CACGTC 2 cut(s) 893, 2962
BmgT120I GGNCC 6 cut(s) 350, 592, 784, 2071, 2551, 3773
BmiI GGNNCC 3 cut(s) 1883, 1910, 3478
BmrFI CCNGG 7 cut(s) 888, 1235, 1296, 1429, 1717, 1913, 3901
BmrI ACTGGG 1 cut(s) 4367
BmtI GCTAGC 2 cut(s) 2141, 3314
BmuI ACTGGG 1 cut(s) 4367
BpiI GAAGAC 5 cut(s) 634, 1854, 3036, 3044, 4374
BpmI CTGGAG 6 cut(s) 729, 813, 834, 1490, 2102, 2228
Bpu10I CCTNAGC 4 cut(s) 1023, 3471, 3720, 4656
Bpu14I TTCGAA 2 cut(s) 3606, 4307
BpuEI CTTGAG 3 cut(s) 131, 1327, 3332
BpuMI CCSGG 3 cut(s) 1235, 1429, 3901
BsaAI YACGTR 1 cut(s) 1592
BsaBI GATNNNNATC 3 cut(s) 486, 974, 1418
BsaHI GRCGYC 1 cut(s) 1133
BsaI GGTCTC 1 cut(s) 1439
BsaJI CCNNGG 2 cut(s) 2686, 3899
BsaWI WCCGGW 2 cut(s) 490, 4345
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 2717, 2747
Bsc4I CCNNNNNNNGG 8 cut(s) 359, 991, 1063, 1722, 2080, 2113, 2908, 3025
Bse118I RCCGGY 2 cut(s) 1056, 2227
Bse21I CCTNAGG 1 cut(s) 780
Bse3DI GCAATG 1 cut(s) 74
Bse8I GATNNNNATC 3 cut(s) 486, 974, 1418
BseAI TCCGGA 2 cut(s) 490, 4345
BseBI CCWGG 4 cut(s) 888, 1296, 1717, 1913
BseDI CCNNGG 2 cut(s) 2686, 3899
BseJI GATNNNNATC 3 cut(s) 486, 974, 1418
BseLI CCNNNNNNNGG 8 cut(s) 359, 991, 1063, 1722, 2080, 2113, 2908, 3025
BseMI GCAATG 1 cut(s) 74
BseRI GAGGAG 3 cut(s) 768, 2801, 3988
BseXI GCAGC 6 cut(s) 85, 221, 607, 2554, 2557, 3222
BseYI CCCAGC 2 cut(s) 34, 329
BshFI GGCC 7 cut(s) 594, 785, 974, 2163, 2552, 3744, 4129
BsiHKAI GWGCWC 6 cut(s) 147, 564, 778, 3472, 4067, 4254
BsiHKCI CYCGRG 1 cut(s) 4801
BsiSI CCGG 9 cut(s) 14, 491, 1057, 1234, 1428, 2228, 3727, 3901, 4346
BslFI GGGAC 3 cut(s) 3701, 4168, 4664
BslI CCNNNNNNNGG 8 cut(s) 359, 991, 1063, 1722, 2080, 2113, 2908, 3025
BsmFI GGGAC 3 cut(s) 3701, 4168, 4664
BsmI GAATGC 3 cut(s) 1756, 2821, 4744
BsnI GGCC 7 cut(s) 594, 785, 974, 2163, 2552, 3744, 4129
Bso31I GGTCTC 1 cut(s) 1439
BsoBI CYCGRG 1 cut(s) 4801
Bsp119I TTCGAA 2 cut(s) 3606, 4307
Bsp1286I GDGCHC 9 cut(s) 147, 564, 778, 1911, 3346, 3472, 3958, 4067, 4254
Bsp13I TCCGGA 2 cut(s) 490, 4345
Bsp1407I TGTACA 1 cut(s) 3249
BspANI GGCC 7 cut(s) 594, 785, 974, 2163, 2552, 3744, 4129
BspEI TCCGGA 2 cut(s) 490, 4345
BspLI GGNNCC 3 cut(s) 1883, 1910, 3478
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 2 cut(s) 145, 2015
BspOI GCTAGC 2 cut(s) 2141, 3314
BspT104I TTCGAA 2 cut(s) 3606, 4307
BspTNI GGTCTC 1 cut(s) 1439
BsrDI GCAATG 1 cut(s) 74
BsrFI RCCGGY 2 cut(s) 1056, 2227
BsrGI TGTACA 1 cut(s) 3249
BssAI RCCGGY 2 cut(s) 1056, 2227
BssECI CCNNGG 2 cut(s) 2686, 3899
BssNI GRCGYC 1 cut(s) 1133
BssT1I CCWWGG 1 cut(s) 2686
Bst2UI CCWGG 4 cut(s) 888, 1296, 1717, 1913
Bst6I CTCTTC 5 cut(s) 703, 900, 3899, 4728, 4772
BstACI GRCGYC 1 cut(s) 1133
BstAPI GCANNNNNTGC 1 cut(s) 2264
BstAUI TGTACA 1 cut(s) 3249
BstBAI YACGTR 1 cut(s) 1592
BstBI TTCGAA 2 cut(s) 3606, 4307
BstC8I GCNNGC 9 cut(s) 232, 1710, 2111, 2115, 2133, 2139, 2229, 3312, 4540
BstH2I RGCGCY 4 cut(s) 275, 324, 1947, 3727
BstHHI GCGC 7 cut(s) 274, 323, 661, 1946, 2137, 2926, 3726
BstMWI GCNNNNNNNGC 8 cut(s) 269, 658, 782, 2123, 2132, 2264, 2576, 3244
BstNI CCWGG 4 cut(s) 888, 1296, 1717, 1913
BstNSI RCATGY 5 cut(s) 1920, 2135, 2206, 3152, 4193
BstSCI CCNGG 7 cut(s) 886, 1233, 1294, 1427, 1715, 1911, 3899
BstSFI CTRYAG 2 cut(s) 138, 2667
BstV1I GCAGC 6 cut(s) 85, 221, 607, 2554, 2557, 3222
BstV2I GAAGAC 5 cut(s) 634, 1854, 3036, 3044, 4374
BstX2I RGATCY 7 cut(s) 421, 1009, 1563, 1881, 2524, 2625, 4319
BstYI RGATCY 7 cut(s) 421, 1009, 1563, 1881, 2524, 2625, 4319
Bsu36I CCTNAGG 1 cut(s) 780
BsuI GTATCC 3 cut(s) 1407, 1479, 2527
BsuRI GGCC 7 cut(s) 594, 785, 974, 2163, 2552, 3744, 4129
BtgZI GCGATG 1 cut(s) 2282
BtrI CACGTC 2 cut(s) 893, 2962
BtsI GCAGTG 1 cut(s) 147
BveI ACCTGC 2 cut(s) 145, 2015
Cac8I GCNNGC 9 cut(s) 232, 1710, 2111, 2115, 2133, 2139, 2229, 3312, 4540
CaiI CAGNNNCTG 4 cut(s) 266, 3947, 4559, 4691
CfoI GCGC 7 cut(s) 274, 323, 661, 1946, 2137, 2926, 3726
Cfr10I RCCGGY 2 cut(s) 1056, 2227
Cfr13I GGNCC 6 cut(s) 350, 592, 784, 2071, 2551, 3773
CseI GACGC 2 cut(s) 3253, 4661
Csp6I GTAC 8 cut(s) 397, 766, 2001, 3067, 3250, 3512, 4223, 4355
CspCI CAANNNNNGTGG 2 cut(s) 2049, 2084
CviQI GTAC 8 cut(s) 397, 766, 2001, 3067, 3250, 3512, 4223, 4355
DraI TTTAAA 1 cut(s) 2643
DrdI GACNNNNNNGTC 2 cut(s) 212, 3836
DseDI GACNNNNNNGTC 2 cut(s) 212, 3836
EaeI YGGCCR 2 cut(s) 972, 3742
Eam1104I CTCTTC 5 cut(s) 703, 900, 3899, 4728, 4772
EarI CTCTTC 5 cut(s) 703, 900, 3899, 4728, 4772
EciI GGCGGA 2 cut(s) 842, 2576
Ecl136II GAGCTC 2 cut(s) 3470, 4252
Eco130I CCWWGG 1 cut(s) 2686
Eco24I GRGCYC 5 cut(s) 1911, 3346, 3472, 3958, 4254
Eco31I GGTCTC 1 cut(s) 1439
Eco32I GATATC 3 cut(s) 2222, 2758, 2812
Eco47I GGWCC 3 cut(s) 350, 2071, 3773
Eco47III AGCGCT 1 cut(s) 322
Eco53kI GAGCTC 2 cut(s) 3470, 4252
Eco72I CACGTG 1 cut(s) 1592
Eco81I CCTNAGG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 4801
EcoICRI GAGCTC 2 cut(s) 3470, 4252
EcoO109I RGGNCCY 1 cut(s) 784
EcoRII CCWGG 4 cut(s) 886, 1294, 1715, 1911
EcoRV GATATC 3 cut(s) 2222, 2758, 2812
EcoT14I CCWWGG 1 cut(s) 2686
EcoT22I ATGCAT 2 cut(s) 2255, 3373
EcoT38I GRGCYC 5 cut(s) 1911, 3346, 3472, 3958, 4254
ErhI CCWWGG 1 cut(s) 2686
FaqI GGGAC 3 cut(s) 3701, 4168, 4664
FauI CCCGC 1 cut(s) 2455
FbaI TGATCA 2 cut(s) 1639, 3000
FblI GTMKAC 1 cut(s) 1269
Fnu4HI GCNGC 7 cut(s) 99, 235, 595, 621, 2568, 2571, 3236
FriOI GRGCYC 5 cut(s) 1911, 3346, 3472, 3958, 4254
Fsp4HI GCNGC 7 cut(s) 99, 235, 595, 621, 2568, 2571, 3236
FspI TGCGCA 1 cut(s) 2925
GlaI GCGC 7 cut(s) 273, 322, 660, 1945, 2136, 2925, 3725
GluI GCNGC 7 cut(s) 99, 235, 595, 621, 2568, 2571, 3236
GsaI CCCAGC 2 cut(s) 38, 333
GsuI CTGGAG 6 cut(s) 729, 813, 834, 1490, 2102, 2228
HaeII RGCGCY 4 cut(s) 275, 324, 1947, 3727
HaeIII GGCC 7 cut(s) 594, 785, 974, 2163, 2552, 3744, 4129
HapII CCGG 9 cut(s) 14, 491, 1057, 1234, 1428, 2228, 3727, 3901, 4346
HgaI GACGC 2 cut(s) 3253, 4661
HhaI GCGC 7 cut(s) 274, 323, 661, 1946, 2137, 2926, 3726
Hin1I GRCGYC 1 cut(s) 1133
Hin6I GCGC 7 cut(s) 272, 321, 659, 1944, 2135, 2924, 3724
HinP1I GCGC 7 cut(s) 272, 321, 659, 1944, 2135, 2924, 3724
HincII GTYRAC 4 cut(s) 1147, 1221, 2393, 2545
HindII GTYRAC 4 cut(s) 1147, 1221, 2393, 2545
HindIII AAGCTT 5 cut(s) 44, 218, 1452, 3792, 3916
HpaII CCGG 9 cut(s) 14, 491, 1057, 1234, 1428, 2228, 3727, 3901, 4346
HphI GGTGA 8 cut(s) 454, 2690, 3305, 3574, 3704, 3952, 4007, 4595
Hpy99I CGWCG 2 cut(s) 1138, 3247
HpyCH4IV ACGT 9 cut(s) 609, 892, 1133, 1591, 2417, 2961, 3061, 3069, 4044
HpyF10VI GCNNNNNNNGC 8 cut(s) 269, 658, 782, 2123, 2132, 2264, 2576, 3244
HpySE526I ACGT 9 cut(s) 609, 892, 1133, 1591, 2417, 2961, 3061, 3069, 4044
Hsp92I GRCGYC 1 cut(s) 1133
HspAI GCGC 7 cut(s) 272, 321, 659, 1944, 2135, 2924, 3724
Kpn2I TCCGGA 2 cut(s) 490, 4345
KroI GCCGGC 1 cut(s) 2227
KroNI GCCGGC 1 cut(s) 2229
Ksp22I TGATCA 2 cut(s) 1639, 3000
LmnI GCTCC 9 cut(s) 61, 121, 781, 1471, 1549, 1914, 3021, 4249, 4769
Lsp1109I GCAGC 6 cut(s) 85, 221, 607, 2554, 2557, 3222
MaeII ACGT 9 cut(s) 609, 892, 1133, 1591, 2417, 2961, 3061, 3069, 4044
MfeI CAATTG 1 cut(s) 1344
MflI RGATCY 7 cut(s) 421, 1009, 1563, 1881, 2524, 2625, 4319
MhlI GDGCHC 9 cut(s) 147, 564, 778, 1911, 3346, 3472, 3958, 4067, 4254
MlsI TGGCCA 2 cut(s) 974, 3744
MluNI TGGCCA 2 cut(s) 974, 3744
MlyI GAGTC 6 cut(s) 3367, 3842, 4565, 4649, 4676, 4756
MmeI TCCRAC 7 cut(s) 99, 399, 838, 847, 1909, 3266, 3333
Mox20I TGGCCA 2 cut(s) 974, 3744
Mph1103I ATGCAT 2 cut(s) 2255, 3373
MroI TCCGGA 2 cut(s) 490, 4345
MroNI GCCGGC 1 cut(s) 2227
MroXI GAANNNNTTC 3 cut(s) 1173, 1861, 2681
MscI TGGCCA 2 cut(s) 974, 3744
MslI CAYNNNNRTG 5 cut(s) 2604, 2703, 3008, 3366, 3965
Msp20I TGGCCA 2 cut(s) 974, 3744
MspA1I CMGCKG 2 cut(s) 771, 3518
MspI CCGG 9 cut(s) 14, 491, 1057, 1234, 1428, 2228, 3727, 3901, 4346
MspR9I CCNGG 7 cut(s) 888, 1235, 1296, 1429, 1717, 1913, 3901
MunI CAATTG 1 cut(s) 1344
Mva1269I GAATGC 3 cut(s) 1756, 2821, 4744
MvaI CCWGG 4 cut(s) 888, 1296, 1717, 1913
MwoI GCNNNNNNNGC 8 cut(s) 269, 658, 782, 2123, 2132, 2264, 2576, 3244
NaeI GCCGGC 1 cut(s) 2229
NciI CCSGG 3 cut(s) 1235, 1429, 3901
NgoMIV GCCGGC 1 cut(s) 2227
NheI GCTAGC 2 cut(s) 2137, 3310
NlaIV GGNNCC 3 cut(s) 1883, 1910, 3478
NmuCI GTSAC 6 cut(s) 605, 1052, 1178, 1587, 3118, 3821
NsbI TGCGCA 1 cut(s) 2925
NsiI ATGCAT 2 cut(s) 2255, 3373
NspI RCATGY 5 cut(s) 1920, 2135, 2206, 3152, 4193
NspV TTCGAA 2 cut(s) 3606, 4307
OliI CACNNNNGTG 1 cut(s) 3965
PaeI GCATGC 1 cut(s) 2135
PaeR7I CTCGAG 1 cut(s) 4801
PaqCI CACCTGC 2 cut(s) 145, 2015
PciI ACATGT 1 cut(s) 4189
PcsI WCGNNNNNNNCGW 1 cut(s) 3239
PctI GAATGC 3 cut(s) 1756, 2821, 4744
PdiI GCCGGC 1 cut(s) 2229
PdmI GAANNNNTTC 3 cut(s) 1173, 1861, 2681
PflMI CCANNNNNTGG 1 cut(s) 359
PfoI TCCNGGA 2 cut(s) 1294, 1715
PkrI GCNGC 7 cut(s) 100, 236, 596, 622, 2569, 2572, 3237
PleI GAGTC 6 cut(s) 3366, 3842, 4564, 4648, 4676, 4756
PmaCI CACGTG 1 cut(s) 1592
PmlI CACGTG 1 cut(s) 1592
PpsI GAGTC 6 cut(s) 3366, 3842, 4564, 4648, 4676, 4756
Ppu21I YACGTR 1 cut(s) 1592
PscI ACATGT 1 cut(s) 4189
Psp124BI GAGCTC 2 cut(s) 3472, 4254
Psp6I CCWGG 4 cut(s) 886, 1294, 1715, 1911
PspCI CACGTG 1 cut(s) 1592
PspFI CCCAGC 2 cut(s) 34, 329
PspGI CCWGG 4 cut(s) 886, 1294, 1715, 1911
PspN4I GGNNCC 3 cut(s) 1883, 1910, 3478
PspPI GGNCC 6 cut(s) 350, 592, 784, 2071, 2551, 3773
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 4 cut(s) 266, 3947, 4559, 4691
PsuI RGATCY 7 cut(s) 421, 1009, 1563, 1881, 2524, 2625, 4319
PvuII CAGCTG 1 cut(s) 3518
RsaI GTAC 8 cut(s) 398, 767, 2002, 3068, 3251, 3513, 4224, 4356
RsaNI GTAC 8 cut(s) 397, 766, 2001, 3067, 3250, 3512, 4223, 4355
RseI CAYNNNNRTG 5 cut(s) 2604, 2703, 3008, 3366, 3965
SacI GAGCTC 2 cut(s) 3472, 4254
SatI GCNGC 7 cut(s) 99, 235, 595, 621, 2568, 2571, 3236
Sau96I GGNCC 6 cut(s) 350, 592, 784, 2071, 2551, 3773
ScaI AGTACT 1 cut(s) 4224
SchI GAGTC 6 cut(s) 3367, 3842, 4565, 4649, 4676, 4756
ScrFI CCNGG 7 cut(s) 888, 1235, 1296, 1429, 1717, 1913, 3901
SduI GDGCHC 9 cut(s) 147, 564, 778, 1911, 3346, 3472, 3958, 4067, 4254
SfcI CTRYAG 2 cut(s) 138, 2667
Sfr274I CTCGAG 1 cut(s) 4801
SfuI TTCGAA 2 cut(s) 3606, 4307
SinI GGWCC 3 cut(s) 350, 2071, 3773
SlaI CTCGAG 1 cut(s) 4801
SmiMI CAYNNNNRTG 5 cut(s) 2604, 2703, 3008, 3366, 3965
SmlI CTYRAG 4 cut(s) 146, 1306, 3347, 4801
SmoI CTYRAG 4 cut(s) 146, 1306, 3347, 4801
SphI GCATGC 1 cut(s) 2135
SspI AATATT 2 cut(s) 289, 2682
SstI GAGCTC 2 cut(s) 3472, 4254
StyD4I CCNGG 7 cut(s) 886, 1233, 1294, 1427, 1715, 1911, 3899
StyI CCWWGG 1 cut(s) 2686
TaiI ACGT 9 cut(s) 612, 895, 1136, 1594, 2420, 2964, 3064, 3072, 4047
TaqII GACCGA 1 cut(s) 962
TatI WGTACW 3 cut(s) 396, 3249, 4222
TauI GCSGC 1 cut(s) 597
TseFI GTSAC 6 cut(s) 605, 1052, 1178, 1587, 3118, 3821
TseI GCWGC 6 cut(s) 98, 234, 620, 2567, 2570, 3235
Tsp45I GTSAC 6 cut(s) 605, 1052, 1178, 1587, 3118, 3821
Van91I CCANNNNNTGG 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 350, 2071, 3773
XapI RAATTY 9 cut(s) 189, 2010, 2385, 2847, 2869, 3435, 3602, 3862, 4303
XbaI TCTAGA 4 cut(s) 2527, 2594, 3577, 3814
XceI RCATGY 5 cut(s) 1920, 2135, 2206, 3152, 4193
XhoI CTCGAG 1 cut(s) 4801
XmiI GTMKAC 1 cut(s) 1269
XmnI GAANNNNTTC 3 cut(s) 1173, 1861, 2681
ZraI GACGTC 1 cut(s) 1134
ZrmI AGTACT 1 cut(s) 4224
Zsp2I ATGCAT 2 cut(s) 2255, 3373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.