Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8390357.1

Orthogroup ID

OG0009376

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 840

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8390357.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaactcaggtagttcaggaggtgctgaaagaaaggatgtgaatgtgtcagaggaggtggactctgacaaggaagtgaagtcagtttccaaaggaaatctgctggaagaggcagaaagtccaaatccaaatattgaggactctgatgaagagatgcctgattctgaagtgaggcctgctggagatatggacagcatcggacaagatactgaaaatacagttgacaagaagcttccttcagaagagaaacaaacagatgaattaaatagatcatcctcgagagaggataatgaggaagagtcgtcagattctgaagggagtaaagaaaaaaatgatgtccatggtgaccgtacaaaactgaagaaaccccatgtacctgtggaaccctcaagcccttctgatgctggggatcttgaactttccgatgatgaaccccttagcaattttacactccgtgtagggaaaagagcttcaaagagagtacgacagcaaaagaagatgaaagacattcaacaatgggaaggagcagctcttatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.74

Weight (kDa)

4.5

Isoelectric Point (pI)

69.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47690 AT5G47690 AT5G47690 AT5G47690
fragaria_vesca	FvH4_3g00310
malus_domestica	MD05G1361800.v1.1 MD10G1339300.v1.1
prunus_persica	Prupe.4G003600_v2.0.a1
pyrus_communis	pycom05g32830 pycom10g28910 pycom10g28920
rosa_chinensis	RchiOBHm_Chr5g0000481
rosa_laevigata	RLG00000030871
rosa_multiflora	Rmu_co8390357.1_g000001 Rmu_sc0003949.1_g000008
rosa_roxburghii	Rroxscaffold_1G00075690
rosa_rugosa	Rorug04G0384200
rosa_samantha	Rh5AG004000 Rh5BG005300 Rh5CG004300 Rh5DG004200
rosa_wichuraiana	Rw5G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	417
AcuI	CTGAAG	4 cut(s)	186, 222, 333, 380
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	352, 375, 483
AgsI	TTSAA	3 cut(s)	416, 474, 512
AluBI	AGCT	3 cut(s)	232, 470, 530
AluI	AGCT	3 cut(s)	232, 470, 530
AlwI	GGATC	1 cut(s)	417
AlwNI	CAGNNNCTG	1 cut(s)	311
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	277
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	384
BmsI	GCATC	3 cut(s)	144, 204, 391
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	43, 272
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	175
BsiHKCI	CYCGRG	1 cut(s)	277
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	269, 409
Bsp19I	CCATGG	1 cut(s)	340
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	269, 409
BssT1I	CCWWGG	1 cut(s)	340
Bst4CI	ACNGT	2 cut(s)	220, 350
Bst6I	CTCTTC	4 cut(s)	102, 144, 237, 291
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	7, 437
BstDSI	CCRYGG	1 cut(s)	340
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	2 cut(s)	43, 272
BstKTI	GATC	2 cut(s)	272, 412
BstMBI	GATC	2 cut(s)	269, 409
BstPI	GGTNACC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	43, 272
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	351, 374, 482
CviAII	CATG	2 cut(s)	341, 371
CviJI	RGCY	5 cut(s)	175, 232, 393, 470, 530
CviKI_1	RGCY	5 cut(s)	175, 232, 393, 470, 530
CviQI	GTAC	3 cut(s)	351, 374, 482
DdeI	CTNAG	2 cut(s)	7, 437
DpnI	GATC	2 cut(s)	271, 411
DpnII	GATC	2 cut(s)	269, 409
DraIII	CACNNNGTG	1 cut(s)	455
Eam1104I	CTCTTC	4 cut(s)	102, 144, 237, 291
EarI	CTCTTC	4 cut(s)	102, 144, 237, 291
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	175
Eco57I	CTGAAG	4 cut(s)	186, 222, 333, 380
Eco88I	CYCGRG	1 cut(s)	277
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	344, 374
FaiI	YATR	4 cut(s)	188, 342, 372, 536
FatI	CATG	2 cut(s)	340, 370
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	2 cut(s)	50, 259
Fsp4HI	GCNGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	528
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	344, 374
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	62, 140, 161, 299, 308
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	61, 223
Hpy188III	TCNNGA	3 cut(s)	18, 279, 413
Hpy8I	GTNNAC	2 cut(s)	61, 223
HpyAV	CCTTC	4 cut(s)	246, 308, 405, 515
HpyCH4III	ACNGT	2 cut(s)	220, 350
HpyF3I	CTNAG	2 cut(s)	7, 437
Hsp92II	CATG	2 cut(s)	344, 374
Kzo9I	GATC	2 cut(s)	269, 409
LmnI	GCTCC	1 cut(s)	524
LpnPI	CCDG	7 cut(s)	3, 89, 165, 171, 189, 390, 390
LweI	GCATC	3 cut(s)	144, 204, 391
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	2 cut(s)	271, 411
MboI	GATC	2 cut(s)	269, 409
MboII	GAAGA	6 cut(s)	119, 161, 254, 308, 373, 508
MflI	RGATCY	1 cut(s)	409
MluCI	AATT	2 cut(s)	260, 442
MlyI	GAGTC	3 cut(s)	56, 134, 308
MseI	TTAA	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	2 cut(s)	269, 409
NlaIII	CATG	2 cut(s)	344, 374
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	161, 308
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	3 cut(s)	56, 134, 307
PpsI	GAGTC	3 cut(s)	56, 134, 307
PspEI	GGTNACC	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	409
RsaI	GTAC	3 cut(s)	352, 375, 483
RsaNI	GTAC	3 cut(s)	351, 374, 482
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	269, 409
SchI	GAGTC	3 cut(s)	56, 134, 308
SetI	ASST	7 cut(s)	13, 25, 60, 234, 379, 472, 532
SfaNI	GCATC	3 cut(s)	144, 204, 391
Sfr274I	CTCGAG	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	277
SmlI	CTYRAG	2 cut(s)	277, 388
SmoI	CTYRAG	2 cut(s)	277, 388
Sse9I	AATT	2 cut(s)	260, 442
SseBI	AGGCCT	1 cut(s)	175
SspI	AATATT	1 cut(s)	133
StuI	AGGCCT	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	220, 350
TaqI	TCGA	1 cut(s)	278
TasI	AATT	2 cut(s)	260, 442
TfiI	GAWTC	2 cut(s)	161, 308
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	5 cut(s)	17, 162, 273, 444, 515
TspGWI	ACGGA	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.