Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009376

Physical Location & Seq

Genomic Coordinates Forward (+)

29375277 .. 29377194

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATAAGCGATTTTATGAAGGCACAGTGAAGTCATTTGATACGTTAAAGAGGAAGCATGTGATACTATATGAGGATGGAGATGTAGAAGTGCTTCGGTTAGAAAAGGAACGGTGGGAGCTCATTGACAAAGGTCGCAAGCCCACTAAGAAGTTAAATTCGTCAAAGAAATCCCCCTCAAAAGAAGTGTCCCCTGGTCAAAAGAATAAGCGCGCAGGTGGTTCGCGTGAGAACAAAAAACCAATTAAAACAGTTAAAAGGAAAAGAACACCAAAGAAAAACTCGGGCGGGAAGAAGGGCGTATCAAAAAGAAATCATTGGGGAAGTAGGGACAAAGATAGTTCTGAAGTTTCGAATGATGAGCCCACCCTTACATCTAAAGTTGAAGAAATGGACTCAGGTAGTTCAGAAGAGAATGCTGAAAATGTGGATGAGAACGTGACAGATGAGGGGGAATCTGACGTGGAAGTGAAATCTGTTTCTGAAGGAAAACGGTTAAAAGATGCAGAAGAAAGTCCACATCATACCGAGGAATCTGCTGAAGAGAAACCTGGTTCCGAAGGGAGCCCTGCTGAAGACATGGACACTATCCCACAAGATGCAGAAAATGGAAATGAGGAGATGCAACACTCAGAAGAGAAAGAAGCAGATGAACTAAGTGGAGGGTCAAGAAAGGTTAACGAGGAAGATCCGTCAGATTCTGAAGGGATTCAAGAAAAAGATGATATTTCTGGCAGTTCCTTGCAACAGGGGAAATCCCATGTAGAGCCTTCAAGTCTTTCTGATGCTGGGGATGACGAACTTTCTGATGATGAGCCTCTTAGCAAGTGGACGCAACGAGTAGTGAAAAAAGGTTCAAGGCCAGTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.15

Weight (kDa)

5.06

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47690 AT5G47690 AT5G47690 AT5G47690
fragaria_vesca	FvH4_3g00310
malus_domestica	MD05G1361800.v1.1 MD10G1339300.v1.1
prunus_persica	Prupe.4G003600_v2.0.a1
pyrus_communis	pycom05g32830 pycom10g28910 pycom10g28920
rosa_chinensis	RchiOBHm_Chr5g0000481
rosa_laevigata	RLG00000030871
rosa_multiflora	Rmu_co8390357.1_g000001 Rmu_sc0003949.1_g000008
rosa_roxburghii	Rroxscaffold_1G00075690
rosa_rugosa	Rorug04G0384200
rosa_samantha	Rh5AG004000 Rh5BG005300 Rh5CG004300 Rh5DG004200
rosa_wichuraiana	Rw5G000400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	206
AccII	CGCG	2 cut(s)	213, 226
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	683
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	5 cut(s)	366, 504, 561, 594, 723
AgsI	TTSAA	4 cut(s)	386, 713, 774, 858
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	193, 550
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	683
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	1 cut(s)	860
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	2 cut(s)	93, 708
AspLEI	GCGC	2 cut(s)	213, 215
AsuII	TTCGAA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	283
BanII	GRGCYC	3 cut(s)	123, 366, 569
BarI	GAAGNNNNNNTAC	2 cut(s)	78, 110
BbsI	GAAGAC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	1 cut(s)	71
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 518, 552
BciT130I	CCWGG	2 cut(s)	195, 552
BfuAI	ACCTGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	195, 552
BmeT110I	CYCGRG	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	463
BmiI	GGNNCC	2 cut(s)	556, 566
BmrFI	CCNGG	2 cut(s)	195, 552
BmsI	GCATC	4 cut(s)	493, 589, 612, 775
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	193, 528
Bse1I	ACTGG	1 cut(s)	863
BseBI	CCWGG	2 cut(s)	195, 552
BseDI	CCNNGG	2 cut(s)	193, 528
BseGI	GGATG	3 cut(s)	82, 436, 799
BseMII	CTCAG	2 cut(s)	411, 645
BseNI	ACTGG	1 cut(s)	863
BsePI	GCGCGC	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	788
Bsh1236I	CGCG	2 cut(s)	213, 226
BshFI	GGCC	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	175, 344
BsmFI	GGGAC	2 cut(s)	175, 344
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	862
BsoBI	CYCGRG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	123, 366, 569
Bsp143I	GATC	1 cut(s)	688
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	1 cut(s)	862
BspCNI	CTCAG	2 cut(s)	410, 644
BspFNI	CGCG	2 cut(s)	213, 226
BspLI	GGNNCC	2 cut(s)	556, 566
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	683
BspT104I	TTCGAA	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	2 cut(s)	193, 528
BssHII	GCGCGC	1 cut(s)	211
BssMI	GATC	1 cut(s)	688
Bst2UI	CCWGG	2 cut(s)	195, 552
Bst4CI	ACNGT	4 cut(s)	28, 114, 253, 495
Bst6I	CTCTTC	3 cut(s)	405, 537, 630
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	140, 213
BstDEI	CTNAG	5 cut(s)	147, 397, 631, 656, 821
BstF5I	GGATG	3 cut(s)	82, 436, 799
BstFNI	CGCG	2 cut(s)	213, 226
BstHHI	GCGC	2 cut(s)	213, 215
BstKTI	GATC	1 cut(s)	691
BstMBI	GATC	1 cut(s)	688
BstNI	CCWGG	2 cut(s)	195, 552
BstNSI	RCATGY	1 cut(s)	62
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	193, 550
BstUI	CGCG	2 cut(s)	213, 226
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	862
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	3 cut(s)	82, 436, 799
BtsIMutI	CAGTG	2 cut(s)	33, 870
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	140, 213
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	2 cut(s)	213, 215
CseI	GACGC	1 cut(s)	841
CsiI	ACCWGGT	1 cut(s)	550
CspCI	CAANNNNNGTGG	1 cut(s)	846
CviAII	CATG	3 cut(s)	59, 580, 761
CviJI	RGCY	7 cut(s)	121, 142, 364, 567, 769, 817, 862
CviKI_1	RGCY	7 cut(s)	121, 142, 364, 567, 769, 817, 862
DdeI	CTNAG	5 cut(s)	147, 397, 631, 656, 821
DpnI	GATC	1 cut(s)	690
DpnII	GATC	1 cut(s)	688
Eam1104I	CTCTTC	3 cut(s)	405, 537, 630
EarI	CTCTTC	3 cut(s)	405, 537, 630
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	3 cut(s)	123, 366, 569
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	5 cut(s)	366, 504, 561, 594, 723
Eco88I	CYCGRG	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	193, 550
EcoT38I	GRGCYC	3 cut(s)	123, 366, 569
FaeI	CATG	3 cut(s)	62, 583, 764
FaiI	YATR	7 cut(s)	18, 60, 70, 72, 525, 581, 762
FaqI	GGGAC	2 cut(s)	175, 344
FatI	CATG	3 cut(s)	58, 579, 760
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	3 cut(s)	89, 443, 806
FriOI	GRGCYC	3 cut(s)	123, 366, 569
GlaI	GCGC	2 cut(s)	212, 214
GsaI	CCCAGC	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	862
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	2 cut(s)	213, 215
Hin1II	CATG	3 cut(s)	62, 583, 764
Hin6I	GCGC	2 cut(s)	211, 213
HinP1I	GCGC	2 cut(s)	211, 213
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	5 cut(s)	395, 455, 533, 698, 709
HpaI	GTTAAC	1 cut(s)	679
Hpy166II	GTNNAC	3 cut(s)	518, 679, 831
Hpy188III	TCNNGA	2 cut(s)	669, 713
Hpy8I	GTNNAC	3 cut(s)	518, 679, 831
HpyAV	CCTTC	6 cut(s)	14, 289, 479, 554, 698, 780
HpyCH4III	ACNGT	4 cut(s)	28, 114, 253, 495
HpyCH4IV	ACGT	3 cut(s)	44, 438, 462
HpyCH4V	TGCA	4 cut(s)	506, 602, 625, 745
HpyF3I	CTNAG	5 cut(s)	147, 397, 631, 656, 821
HpySE526I	ACGT	3 cut(s)	44, 438, 462
Hsp92II	CATG	3 cut(s)	62, 583, 764
HspAI	GCGC	2 cut(s)	211, 213
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	688
LmnI	GCTCC	2 cut(s)	118, 564
LweI	GCATC	4 cut(s)	493, 589, 612, 775
MabI	ACCWGGT	1 cut(s)	550
MaeII	ACGT	3 cut(s)	44, 438, 462
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	690
MboI	GATC	1 cut(s)	688
MboII	GAAGA	8 cut(s)	304, 398, 422, 521, 554, 587, 647, 698
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	3 cut(s)	123, 366, 569
MluCI	AATT	2 cut(s)	157, 243
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	9 cut(s)	45, 67, 187, 442, 523, 610, 656, 676, 828
MroXI	GAANNNNTTC	2 cut(s)	93, 708
MseI	TTAA	6 cut(s)	47, 155, 246, 255, 497, 678
MspR9I	CCNGG	2 cut(s)	195, 552
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	195, 552
MvnI	CGCG	2 cut(s)	213, 226
NdeII	GATC	1 cut(s)	688
NlaIII	CATG	3 cut(s)	62, 583, 764
NlaIV	GGNNCC	2 cut(s)	556, 566
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	62
NspV	TTCGAA	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	206
PauI	GCGCGC	1 cut(s)	211
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	2 cut(s)	93, 708
PfeI	GAWTC	4 cut(s)	455, 533, 698, 709
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PshAI	GACNNNNGTC	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	193, 550
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	2 cut(s)	193, 550
PspN4I	GGNNCC	2 cut(s)	556, 566
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	688
PteI	GCGCGC	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	6 cut(s)	47, 155, 246, 255, 497, 678
Sau3AI	GATC	1 cut(s)	688
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	195, 552
SduI	GDGCHC	3 cut(s)	123, 366, 569
SexAI	ACCWGGT	1 cut(s)	550
SfaNI	GCATC	4 cut(s)	493, 589, 612, 775
SfuI	TTCGAA	1 cut(s)	353
Sse9I	AATT	2 cut(s)	157, 243
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	193, 550
TaaI	ACNGT	4 cut(s)	28, 114, 253, 495
TaiI	ACGT	3 cut(s)	47, 441, 465
TaqI	TCGA	1 cut(s)	353
TasI	AATT	2 cut(s)	157, 243
TfiI	GAWTC	4 cut(s)	455, 533, 698, 709
Tru1I	TTAA	6 cut(s)	47, 155, 246, 255, 497, 678
Tru9I	TTAA	6 cut(s)	47, 155, 246, 255, 497, 678
TscAI	CASTG	2 cut(s)	33, 870
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	33, 666
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	2 cut(s)	33, 870
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	62
XmnI	GAANNNNTTC	2 cut(s)	93, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.