Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Reverse (-)

19342405 .. 19345127

Gene Structure 2723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGCCTCAGCTTCTCTCCTCCAGTAACTTCAAATCTCTCTTTGACTCTGTCGATACGTTCCTCTTCGACTGCGATGGTGTTATATGGAAGGGTGAAACGCTCATCGATGGCGTCTCCCAAACTCTCGACCTTATCCGTTCTAAGGGTAAAAATGTTGTCTTTGTGACCAACAATTCCGTAAAATCGAGGAGGCAATACGCTGAAAAGTTCCGATCTTTGGGTGTCACTTCTATTACTCAGGATGAGATCTTCTCTTCGTCATTTGCGGCAGCTATGTATCTCAAAGTCAATAACTTTCCTAAGGACAAGAAGGTTTATGTGATTGGTGGAGAGGGTGTTCTTGAGGAGCTGCAGATTGCCGGTTTTACAGGTCTTGGTGGTCCTGAAGATGGTGAAAAGAAGGCACAATGGAAATCAAACTCTCTCTTTGAACATGATAAAAGTGTGGGAGCAGTTGTAGTTGGACTAGACCCCAACATTAACTACTATAAGCTTCAGTACGGGACTCTCTGTGTACGCGAGAATCCGGGATGTCTCTTCATTGCGACCAACCGTGATGCAGTAGGACATATGACGGATCTGCAAGAGTGGCCTGGTGCTGGGTGTATGGTTGCTGCCATGTGTGGATCGACTGAAAGAGAACCAATAGTTGTTGGGAAACCATCTACTTTCATGATGGACTTTCTGCTACAAAAATTTGGGACGGAAACGTCAAGAATGTGCATGGTAGGTGATAGGCTAGATACTGATATCTTGTTTGGGCAGAATGCTGGCTGCAAAACTCTCCTCGTCCTAACAGGGGTGACAAGTGAATCTAATCTACTAGATAAGGGCAACAAGATAGAACCAGACTATTACACAAGCACAGTCTCTGATATCATAAAACTGATGGAGTCCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

301

Amino Acids

33.01

Weight (kDa)

5.05

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	21 - 124	1.9e-33	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	712
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	522
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	2 cut(s)	588, 637
AcsI	RAATTY	1 cut(s)	698
AcuI	CTGAAG	2 cut(s)	408, 482
AcyI	GRCGYC	2 cut(s)	5, 114
AfaI	GTAC	2 cut(s)	503, 519
AfiI	CCNNNNNNNGG	5 cut(s)	145, 220, 392, 602, 802
AgsI	TTSAA	2 cut(s)	34, 434
AjnI	CCWGG	1 cut(s)	595
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	4 cut(s)	13, 275, 352, 496
AluI	AGCT	4 cut(s)	13, 275, 352, 496
Alw26I	GTCTC	3 cut(s)	121, 542, 877
AlwI	GGATC	2 cut(s)	588, 637
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	1 cut(s)	593
ApeKI	GCWGC	4 cut(s)	272, 352, 617, 777
ApoI	RAATTY	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	4 cut(s)	107, 407, 746, 817
AvaII	GGWCC	1 cut(s)	383
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	284, 339, 604, 764
BccI	CCATC	6 cut(s)	71, 104, 386, 673, 673, 886
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	121, 542, 877
BfaI	CTAG	4 cut(s)	470, 743, 827, 904
BfmI	CTRYAG	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	249
BisI	GCNGC	5 cut(s)	270, 273, 353, 618, 778
BlsI	GCNGC	5 cut(s)	271, 274, 354, 619, 779
Bme1390I	CCNGG	2 cut(s)	531, 597
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	531, 597
BmsI	GCATC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	531
Bsa29I	ATCGAT	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	5, 114
BsaXI	ACNNNNNCTCC	4 cut(s)	324, 354, 444, 474
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 220, 392, 602, 802
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	597
BseCI	ATCGAT	1 cut(s)	108
BseGI	GGATG	2 cut(s)	250, 539
BseLI	CCNNNNNNNGG	5 cut(s)	145, 220, 392, 602, 802
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	2 cut(s)	23, 254
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	4 cut(s)	10, 205, 362, 779
BseXI	GCAGC	4 cut(s)	284, 339, 604, 764
BseYI	CCCAGC	1 cut(s)	602
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	595
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	363, 530
BslFI	GGGAC	3 cut(s)	520, 718, 883
BslI	CCNNNNNNNGG	5 cut(s)	145, 220, 392, 602, 802
BsmAI	GTCTC	3 cut(s)	121, 542, 877
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	3 cut(s)	520, 718, 883
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	1 cut(s)	595
Bsp143I	GATC	4 cut(s)	215, 249, 580, 629
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	2 cut(s)	22, 253
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	2 cut(s)	588, 637
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	24
BssAI	RCCGGY	1 cut(s)	362
BssMI	GATC	4 cut(s)	215, 249, 580, 629
BssNI	GRCGYC	2 cut(s)	5, 114
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	557, 871
Bst6I	CTCTTC	3 cut(s)	71, 262, 545
BstACI	GRCGYC	2 cut(s)	5, 114
BstC8I	GCNNGC	1 cut(s)	775
BstDEI	CTNAG	4 cut(s)	9, 144, 240, 303
BstF5I	GGATG	2 cut(s)	250, 539
BstFNI	CGCG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	218, 252, 583, 632
BstMAI	GTCTC	3 cut(s)	121, 542, 877
BstMBI	GATC	4 cut(s)	215, 249, 580, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	529, 595
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	4 cut(s)	284, 339, 604, 764
BstX2I	RGATCY	2 cut(s)	249, 580
BstYI	RGATCY	2 cut(s)	249, 580
Bsu15I	ATCGAT	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	595
BsuTUI	ATCGAT	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	250, 539
Cac8I	GCNNGC	1 cut(s)	775
CaiI	CAGNNNCTG	1 cut(s)	875
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	502, 518
CviAII	CATG	4 cut(s)	437, 622, 676, 727
CviJI	RGCY	7 cut(s)	13, 275, 352, 496, 595, 742, 777
CviKI_1	RGCY	7 cut(s)	13, 275, 352, 496, 595, 742, 777
CviQI	GTAC	2 cut(s)	502, 518
DdeI	CTNAG	4 cut(s)	9, 144, 240, 303
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	4 cut(s)	217, 251, 582, 631
DpnII	GATC	4 cut(s)	215, 249, 580, 629
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	71, 262, 545
EarI	CTCTTC	3 cut(s)	71, 262, 545
Eco32I	GATATC	2 cut(s)	754, 880
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	408, 482
Eco81I	CCTNAGG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	595
EcoRV	GATATC	2 cut(s)	754, 880
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	440, 625, 679, 730
FaqI	GGGAC	3 cut(s)	520, 718, 883
FatI	CATG	4 cut(s)	436, 621, 675, 726
FauNDI	CATATG	1 cut(s)	573
Fnu4HI	GCNGC	5 cut(s)	270, 273, 353, 618, 778
FokI	GGATG	2 cut(s)	257, 546
Fsp4HI	GCNGC	5 cut(s)	270, 273, 353, 618, 778
FspBI	CTAG	4 cut(s)	470, 743, 827, 904
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	5 cut(s)	270, 273, 353, 618, 778
GsaI	CCCAGC	1 cut(s)	606
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	595
HapII	CCGG	2 cut(s)	363, 530
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	5, 114
Hin1II	CATG	4 cut(s)	440, 625, 679, 730
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	5 cut(s)	47, 508, 526, 815, 896
HpaII	CCGG	2 cut(s)	363, 530
HphI	GGTGA	4 cut(s)	107, 407, 746, 817
Hpy166II	GTNNAC	1 cut(s)	518
Hpy188I	TCNGA	2 cut(s)	215, 877
Hpy188III	TCNNGA	6 cut(s)	128, 242, 344, 386, 676, 717
Hpy8I	GTNNAC	1 cut(s)	518
HpyAV	CCTTC	3 cut(s)	85, 307, 397
HpyCH4III	ACNGT	2 cut(s)	557, 871
HpyCH4IV	ACGT	2 cut(s)	59, 713
HpyCH4V	TGCA	5 cut(s)	355, 563, 586, 726, 780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	4 cut(s)	9, 144, 240, 303
HpySE526I	ACGT	2 cut(s)	59, 713
Hsp92I	GRCGYC	2 cut(s)	5, 114
Hsp92II	CATG	4 cut(s)	440, 625, 679, 730
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	4 cut(s)	215, 249, 580, 629
LmnI	GCTCC	2 cut(s)	349, 452
Lsp1109I	GCAGC	4 cut(s)	284, 339, 604, 764
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	4 cut(s)	470, 743, 827, 904
MaeII	ACGT	2 cut(s)	59, 713
MaeIII	GTNAC	4 cut(s)	26, 166, 226, 805
MalI	GATC	4 cut(s)	217, 251, 582, 631
MboI	GATC	4 cut(s)	215, 249, 580, 629
MboII	GAAGA	5 cut(s)	58, 244, 249, 401, 532
MflI	RGATCY	2 cut(s)	249, 580
MluCI	AATT	2 cut(s)	175, 698
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	41, 502, 905
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	18, 31, 74, 183, 186, 328, 340, 800
MseI	TTAA	1 cut(s)	483
MspI	CCGG	2 cut(s)	363, 530
MspR9I	CCNGG	2 cut(s)	531, 597
Mva1269I	GAATGC	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	1 cut(s)	592
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	531
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	4 cut(s)	215, 249, 580, 629
NlaIII	CATG	4 cut(s)	440, 625, 679, 730
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	166, 226, 805
PagI	TCATGA	1 cut(s)	675
PctI	GAATGC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	526, 815
PflFI	GACNNNGTC	1 cut(s)	50
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	5 cut(s)	271, 274, 354, 619, 779
PleI	GAGTC	3 cut(s)	41, 502, 904
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	3 cut(s)	41, 502, 904
Psp6I	CCWGG	1 cut(s)	595
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	875
PsuI	RGATCY	2 cut(s)	249, 580
PsyI	GACNNNGTC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	503, 519
RsaNI	GTAC	2 cut(s)	502, 518
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	270, 273, 353, 618, 778
Sau3AI	GATC	4 cut(s)	215, 249, 580, 629
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	3 cut(s)	41, 502, 905
ScrFI	CCNGG	2 cut(s)	531, 597
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	1 cut(s)	353
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	175, 698
SsiI	CCGC	1 cut(s)	269
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	4 cut(s)	470, 743, 827, 904
StyD4I	CCNGG	2 cut(s)	529, 595
TaaI	ACNGT	2 cut(s)	557, 871
TaiI	ACGT	2 cut(s)	62, 716
TaqI	TCGA	6 cut(s)	54, 69, 108, 129, 188, 632
TasI	AATT	2 cut(s)	175, 698
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	526, 815
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	3 cut(s)	166, 226, 805
TseI	GCWGC	4 cut(s)	272, 352, 617, 777
Tsp45I	GTSAC	3 cut(s)	166, 226, 805
TspDTI	ATGAA	2 cut(s)	532, 664
TspGWI	ACGGA	4 cut(s)	128, 169, 593, 722
Tth111I	GACNNNGTC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	698
XspI	CTAG	4 cut(s)	470, 743, 827, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.