Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Reverse (-)

41553262 .. 41556624

Gene Structure 3363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1340000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAACTCCTCCCTGTCCCAGTCTCAGCTGCTTTCTCGTCAGAACGCGAACCAGCTCCTGGATTCTATCGAAGCTTTTCTCTTCGACTGCGATGGTGTCATTTGGAAGGGCGATAAGCTCATCGATGGCGGGAAGAAGCTGGTGTTCGTTACCAACAATTCGACAAAATCAAGAAAGCAATACGCGGACAAGTTCCTTTCCCTCGGCATTTCGGTTTCTGAGGATGAGATATTCTCTTCATCCTTTGCCGCTGCTATGTACTTGCAACTCATTAACTTCCCCAAACACAAGAAGGTTTATGTGATAGGGGAACAAGGCATATTGGAAGAGCTGCAGCTTGCTGGATTTACAGCTCTCGGTGGCCCCGTTGGAGCAGTTGTGGTTGGACTAGACCAGTATATTAACTATTACAAGCTTCAATATGGAACCCTCTGCATACGTGAAAATCCAGGATGTCTTTTCATTGCAACCAATAGAGATGCAGTTGGACACATGACTGATTTACAAGAATGGCCTGGTGCGGGGTGTATGGTAGCTGCGATCTGTGGATCCACCCAGAAGGAACCTATTGTAGTTGGAAAGCCATCTAATTTCCTGATGGAATTTTTGTTAAAGAAATTCGATATTAGTTGCTCCAAAATGTGTATGGTGGGTGACAGATTAGATACTGATATATTGTTTGGCCAGAATGCTGGCTGCAGAACTCTACTCGTTCTTTCGGGTGTGACGACTCAATCTGCTCTTGAAGACCCTTCAAATAAGACTCAACCAGAGTACTATACGAGCACGTTGTCCGACATTTTGGACTTGATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

273

Amino Acids

29.81

Weight (kDa)

5.02

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	23 - 232	3.4e-16	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	26 - 117	7.7e-24	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	192 - 266	4e-21	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccII	CGCG	2 cut(s)	47, 185
AciI	CCGC	4 cut(s)	129, 185, 249, 521
AclWI	GGATC	2 cut(s)	543, 556
AcoI	YGGCCR	1 cut(s)	682
AcsI	RAATTY	2 cut(s)	602, 617
AfaI	GTAC	2 cut(s)	260, 776
AfiI	CCNNNNNNNGG	2 cut(s)	58, 521
AgsI	TTSAA	3 cut(s)	419, 746, 756
AjnI	CCWGG	3 cut(s)	57, 448, 514
Alw21I	GWGCWC	1 cut(s)	788
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	543, 556
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	3 cut(s)	361, 512, 682
ApeKI	GCWGC	6 cut(s)	28, 251, 331, 334, 536, 696
ApoI	RAATTY	2 cut(s)	602, 617
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	684
BamHI	GGATCC	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	788
BbvI	GCAGC	6 cut(s)	15, 238, 318, 346, 523, 683
BccI	CCATC	4 cut(s)	86, 119, 592, 592
BciT130I	CCWGG	3 cut(s)	59, 450, 516
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	2 cut(s)	332, 697
BisI	GCNGC	7 cut(s)	29, 249, 252, 332, 335, 537, 697
BlsI	GCNGC	7 cut(s)	30, 250, 253, 333, 336, 538, 698
BmcAI	AGTACT	1 cut(s)	776
Bme1390I	CCNGG	3 cut(s)	59, 450, 516
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	4 cut(s)	364, 427, 550, 564
BmrFI	CCNGG	3 cut(s)	59, 450, 516
BmrI	ACTGGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	469
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	753
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bsa29I	ATCGAT	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 521
Bse1I	ACTGG	2 cut(s)	19, 394
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	3 cut(s)	59, 450, 516
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	3 cut(s)	229, 239, 458
BseLI	CCNNNNNNNGG	2 cut(s)	58, 521
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	38, 210
BseNI	ACTGG	2 cut(s)	19, 394
BseXI	GCAGC	6 cut(s)	15, 238, 318, 346, 523, 683
Bsh1236I	CGCG	2 cut(s)	47, 185
BshFI	GGCC	3 cut(s)	363, 514, 684
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	58, 521
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	3 cut(s)	363, 514, 684
Bsp1286I	GDGCHC	1 cut(s)	788
Bsp143I	GATC	2 cut(s)	540, 548
BspACI	CCGC	4 cut(s)	129, 185, 249, 521
BspANI	GGCC	3 cut(s)	363, 514, 684
BspCNI	CTCAG	2 cut(s)	37, 211
BspDI	ATCGAT	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	47, 185
BspLI	GGNNCC	4 cut(s)	364, 427, 550, 564
BspMAI	CTGCAG	2 cut(s)	336, 701
BspPI	GGATC	2 cut(s)	543, 556
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	19, 394
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	540, 548
Bst2UI	CCWGG	3 cut(s)	59, 450, 516
Bst6I	CTCTTC	3 cut(s)	86, 241, 321
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	2 cut(s)	339, 694
BstDEI	CTNAG	2 cut(s)	24, 219
BstF5I	GGATG	3 cut(s)	229, 239, 458
BstFNI	CGCG	2 cut(s)	47, 185
BstKTI	GATC	2 cut(s)	543, 551
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	540, 548
BstNI	CCWGG	3 cut(s)	59, 450, 516
BstSCI	CCNGG	3 cut(s)	57, 448, 514
BstSFI	CTRYAG	2 cut(s)	332, 697
BstUI	CGCG	2 cut(s)	47, 185
BstV1I	GCAGC	6 cut(s)	15, 238, 318, 346, 523, 683
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	123
BsuRI	GGCC	3 cut(s)	363, 514, 684
BsuTUI	ATCGAT	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	229, 239, 458
Cac8I	GCNNGC	2 cut(s)	339, 694
CaiI	CAGNNNCTG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	259, 775
CviAII	CATG	1 cut(s)	493
CviQI	GTAC	2 cut(s)	259, 775
DdeI	CTNAG	2 cut(s)	24, 219
DpnI	GATC	2 cut(s)	542, 550
DpnII	GATC	2 cut(s)	540, 548
EaeI	YGGCCR	1 cut(s)	682
Eam1104I	CTCTTC	3 cut(s)	86, 241, 321
EarI	CTCTTC	3 cut(s)	86, 241, 321
EcoRII	CCWGG	3 cut(s)	57, 448, 514
FaeI	CATG	1 cut(s)	496
FatI	CATG	1 cut(s)	492
FauI	CCCGC	2 cut(s)	122, 514
Fnu4HI	GCNGC	7 cut(s)	29, 249, 252, 332, 335, 537, 697
FokI	GGATG	3 cut(s)	226, 236, 465
Fsp4HI	GCNGC	7 cut(s)	29, 249, 252, 332, 335, 537, 697
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	7 cut(s)	29, 249, 252, 332, 335, 537, 697
HaeIII	GGCC	3 cut(s)	363, 514, 684
Hin1II	CATG	1 cut(s)	496
HindIII	AAGCTT	2 cut(s)	72, 413
HinfI	GANTC	3 cut(s)	62, 730, 763
HphI	GGTGA	1 cut(s)	665
Hpy188I	TCNGA	3 cut(s)	42, 220, 796
Hpy188III	TCNNGA	3 cut(s)	171, 595, 743
HpyAV	CCTTC	4 cut(s)	100, 286, 553, 762
HpyCH4IV	ACGT	2 cut(s)	439, 788
HpyCH4V	TGCA	6 cut(s)	265, 334, 435, 467, 482, 699
HpyF3I	CTNAG	2 cut(s)	24, 219
HpySE526I	ACGT	2 cut(s)	439, 788
Hsp92II	CATG	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	540, 548
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	60, 371, 638
Lsp1109I	GCAGC	6 cut(s)	15, 238, 318, 346, 523, 683
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	2 cut(s)	439, 788
MaeIII	GTNAC	3 cut(s)	148, 653, 724
MalI	GATC	2 cut(s)	542, 550
MboI	GATC	2 cut(s)	540, 548
MboII	GAAGA	5 cut(s)	73, 145, 228, 338, 758
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	788
MlsI	TGGCCA	1 cut(s)	684
MluCI	AATT	4 cut(s)	157, 589, 602, 617
MluNI	TGGCCA	1 cut(s)	684
MlyI	GAGTC	2 cut(s)	724, 757
MmeI	TCCRAC	5 cut(s)	349, 364, 466, 556, 819
MnlI	CCTC	4 cut(s)	19, 212, 214, 440
Mox20I	TGGCCA	1 cut(s)	684
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	684
MseI	TTAA	3 cut(s)	273, 402, 611
Msp20I	TGGCCA	1 cut(s)	684
MspA1I	CMGCKG	2 cut(s)	28, 251
MspR9I	CCNGG	3 cut(s)	59, 450, 516
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	3 cut(s)	59, 450, 516
MvnI	CGCG	2 cut(s)	47, 185
NdeII	GATC	2 cut(s)	540, 548
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	4 cut(s)	364, 427, 550, 564
NmeAIII	GCCGAG	1 cut(s)	183
NmuCI	GTSAC	2 cut(s)	653, 724
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	2 cut(s)	363, 725
PctI	GAATGC	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	58
PfoI	TCCNGGA	2 cut(s)	57, 448
PkrI	GCNGC	7 cut(s)	30, 250, 253, 333, 336, 538, 698
PleI	GAGTC	2 cut(s)	724, 757
PpsI	GAGTC	2 cut(s)	724, 757
Ppu21I	YACGTR	1 cut(s)	440
Psp6I	CCWGG	3 cut(s)	57, 448, 514
PspGI	CCWGG	3 cut(s)	57, 448, 514
PspN4I	GGNNCC	4 cut(s)	364, 427, 550, 564
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	2 cut(s)	336, 701
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	260, 776
RsaNI	GTAC	2 cut(s)	259, 775
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	273, 402, 611
SatI	GCNGC	7 cut(s)	29, 249, 252, 332, 335, 537, 697
Sau3AI	GATC	2 cut(s)	540, 548
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	776
SchI	GAGTC	2 cut(s)	724, 757
ScrFI	CCNGG	3 cut(s)	59, 450, 516
SduI	GDGCHC	1 cut(s)	788
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	332, 697
Sse9I	AATT	4 cut(s)	157, 589, 602, 617
SsiI	CCGC	4 cut(s)	129, 185, 249, 521
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	3 cut(s)	57, 448, 514
TaiI	ACGT	2 cut(s)	442, 791
TaqI	TCGA	5 cut(s)	69, 84, 123, 161, 621
TasI	AATT	4 cut(s)	157, 589, 602, 617
TatI	WGTACW	2 cut(s)	258, 774
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	273, 402, 611
Tru9I	TTAA	3 cut(s)	273, 402, 611
TseFI	GTSAC	2 cut(s)	653, 724
TseI	GCWGC	6 cut(s)	28, 251, 331, 334, 536, 696
Tsp45I	GTSAC	2 cut(s)	653, 724
TspDTI	ATGAA	3 cut(s)	17, 228, 451
Van91I	CCANNNNNTGG	1 cut(s)	58
XapI	RAATTY	2 cut(s)	602, 617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.