Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

147485 .. 150592

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00250.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAACTCCTCCATCTCGCAGCTGCTGTCTCTCGAGAAAGCCAAGGATCTTGTGGATTCCACCCAAGCTTTTCTCTTCGATTGCGATGGTGTCATTTGGAAGGGCGACAAGCTTATCGATGGCGTCCCTCGCACTCTTGACTTTCTTCGATCAAAGGGCAAGAAGCTGGTGTTCGTCACAAACAACTCCACAAAATCAAGGAAGCAATACGCCAACAAGTTCCTTTCCCTTGGCATTTCAGTTTCCGAGGAGGAGATATTCTCTTCATCCTTTGCTGCCGCAATGTACTTGCAACTCATTAACTTTCCCCAACACAAGAAGGTTTATGTAATAGGTGAACAGGGCATTTTAGAAGAGCTGCAGCTTGCTGGCTTTACCGCTCTTGGCGGCCCTGAAGATGGTAAAAAGACTGTACAGCTGAAATCAAATTGCCTCTTTGAACATGATAAAAGTGTTGGAGCAGTTGTTGTTGGTCTTGACCAGTATATCAACTATTACAAACTTCAGTATGGAACCCTTTGTATACGTGAAAATCCGGGATGCCTTTTCATTGCAACCAATCGTGATGCAGTTGGACACATGACTGACTTACAAGAATGGCCTGGTGCTGGGTGTATGGTAGCTGCTATCTGTGGAACCACCCAGAAGGAGCCTATTGTAGTTGGAAAGCCATCCACTTTCCTAATGGACTTTTTACTAAAGAAATTCGACATTAGTTGCTCCAAAATGTGTATGGTGGGTGATAGATTAGATACTGATATATTATTTGGACAGAATGCTGGGTGCAAAACACTGCTCGTTCTTTCAGGTGTTACAACTCTTTCTGCTCTTCAAGATGCTTCAAATAAGACGCATCCAGATTACTATACAAACAAGTTGTCGGACATCTTTGAGATGTTGCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

303

Amino Acids

33.29

Weight (kDa)

6.12

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	24 - 149	2.8e-30	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	523
AciI	CCGC	3 cut(s)	279, 378, 387
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	2 cut(s)	414, 488
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	287, 414
AfiI	CCNNNNNNNGG	2 cut(s)	398, 608
AgsI	TTSAA	3 cut(s)	440, 833, 843
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	8 cut(s)	22, 68, 112, 166, 358, 364, 418, 623
AluI	AGCT	8 cut(s)	22, 68, 112, 166, 358, 364, 418, 623
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	388, 599
ApeKI	GCWGC	6 cut(s)	19, 22, 275, 358, 361, 623
ApoI	RAATTY	1 cut(s)	704
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	2 cut(s)	347, 752
AvaI	CYCGRG	1 cut(s)	32
BbvI	GCAGC	6 cut(s)	9, 31, 262, 345, 373, 610
BccI	CCATC	5 cut(s)	20, 80, 113, 392, 679
BciT130I	CCWGG	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	359
BisI	GCNGC	8 cut(s)	20, 23, 276, 279, 359, 362, 388, 624
BlsI	GCNGC	8 cut(s)	21, 24, 277, 280, 360, 363, 389, 625
Bme1390I	CCNGG	2 cut(s)	537, 603
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	3 cut(s)	514, 637, 651
BmrFI	CCNGG	2 cut(s)	537, 603
BmsI	GCATC	4 cut(s)	530, 556, 826, 862
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpuMI	CCSGG	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	42, 229, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 608
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	2 cut(s)	288, 549
BseBI	CCWGG	1 cut(s)	603
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	42, 229, 246
BseGI	GGATG	4 cut(s)	266, 545, 671, 853
BseLI	CCNNNNNNNGG	2 cut(s)	398, 608
BseMI	GCAATG	2 cut(s)	288, 549
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	263, 266
BseXI	GCAGC	6 cut(s)	9, 31, 262, 345, 373, 610
BseYI	CCCAGC	2 cut(s)	608, 779
BshFI	GGCC	2 cut(s)	390, 601
BshVI	ATCGAT	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	398, 608
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	390, 601
BsoBI	CYCGRG	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	46, 149
BspACI	CCGC	3 cut(s)	279, 378, 387
BspANI	GGCC	2 cut(s)	390, 601
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	3 cut(s)	514, 637, 651
BspMAI	CTGCAG	1 cut(s)	363
BspPI	GGATC	1 cut(s)	54
BspQI	GCTCTTC	2 cut(s)	348, 834
BsrBI	CCGCTC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	288, 549
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	42, 229, 246
BssMI	GATC	2 cut(s)	46, 149
BssNAI	GTATAC	1 cut(s)	524
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	42, 229
Bst1107I	GTATAC	1 cut(s)	524
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	4 cut(s)	80, 268, 348, 834
BstACI	GRCGYC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	366, 370
BstF5I	GGATG	4 cut(s)	266, 545, 671, 853
BstKTI	GATC	2 cut(s)	49, 152
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	2 cut(s)	46, 149
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	2 cut(s)	535, 601
BstSFI	CTRYAG	1 cut(s)	359
BstV1I	GCAGC	6 cut(s)	9, 31, 262, 345, 373, 610
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	524
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	390, 601
BsuTUI	ATCGAT	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	266, 545, 671, 853
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	366, 370
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	117
CseI	GACGC	2 cut(s)	112, 859
Csp6I	GTAC	2 cut(s)	286, 413
CviAII	CATG	2 cut(s)	443, 580
CviQI	GTAC	2 cut(s)	286, 413
DpnI	GATC	2 cut(s)	48, 151
DpnII	GATC	2 cut(s)	46, 149
Eam1104I	CTCTTC	4 cut(s)	80, 268, 348, 834
EarI	CTCTTC	4 cut(s)	80, 268, 348, 834
Eco130I	CCWWGG	2 cut(s)	42, 229
Eco57I	CTGAAG	2 cut(s)	414, 488
Eco88I	CYCGRG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	2 cut(s)	42, 229
ErhI	CCWWGG	2 cut(s)	42, 229
FaeI	CATG	2 cut(s)	446, 583
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	442, 579
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	8 cut(s)	20, 23, 276, 279, 359, 362, 388, 624
FokI	GGATG	4 cut(s)	253, 552, 658, 840
Fsp4HI	GCNGC	8 cut(s)	20, 23, 276, 279, 359, 362, 388, 624
GluI	GCNGC	8 cut(s)	20, 23, 276, 279, 359, 362, 388, 624
GsaI	CCCAGC	2 cut(s)	612, 783
HaeIII	GGCC	2 cut(s)	390, 601
HapII	CCGG	1 cut(s)	536
HgaI	GACGC	2 cut(s)	112, 859
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	446, 583
HindIII	AAGCTT	2 cut(s)	66, 110
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	536
HphI	GGTGA	2 cut(s)	347, 752
Hpy166II	GTNNAC	2 cut(s)	338, 524
Hpy188I	TCNGA	2 cut(s)	247, 883
Hpy188III	TCNNGA	7 cut(s)	32, 34, 137, 476, 563, 833, 857
Hpy8I	GTNNAC	2 cut(s)	338, 524
HpyAV	CCTTC	3 cut(s)	94, 313, 640
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	526
HpyCH4V	TGCA	6 cut(s)	292, 361, 554, 569, 786, 901
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	446, 583
Kzo9I	GATC	2 cut(s)	46, 149
LguI	GCTCTTC	2 cut(s)	348, 834
LmnI	GCTCC	3 cut(s)	458, 649, 725
Lsp1109I	GCAGC	6 cut(s)	9, 31, 262, 345, 373, 610
LweI	GCATC	4 cut(s)	530, 556, 826, 862
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	175, 811
MalI	GATC	2 cut(s)	48, 151
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	2 cut(s)	46, 149
MboII	GAAGA	6 cut(s)	67, 137, 255, 365, 407, 821
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	427, 704
MmeI	TCCRAC	4 cut(s)	436, 553, 643, 861
MnlI	CCTC	5 cut(s)	19, 138, 241, 244, 443
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	22, 418
MspI	CCGG	1 cut(s)	536
MspR9I	CCNGG	2 cut(s)	537, 603
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	2 cut(s)	46, 149
NlaIII	CATG	2 cut(s)	446, 583
NlaIV	GGNNCC	3 cut(s)	514, 637, 651
NmuCI	GTSAC	1 cut(s)	175
PaeR7I	CTCGAG	1 cut(s)	32
PciSI	GCTCTTC	2 cut(s)	348, 834
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	8 cut(s)	21, 24, 277, 280, 360, 363, 389, 625
Ppu21I	YACGTR	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	601
PspFI	CCCAGC	2 cut(s)	608, 779
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	3 cut(s)	514, 637, 651
PspPI	GGNCC	1 cut(s)	389
PstI	CTGCAG	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	2 cut(s)	22, 418
RsaI	GTAC	2 cut(s)	287, 414
RsaNI	GTAC	2 cut(s)	286, 413
SapI	GCTCTTC	2 cut(s)	348, 834
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	8 cut(s)	20, 23, 276, 279, 359, 362, 388, 624
Sau3AI	GATC	2 cut(s)	46, 149
Sau96I	GGNCC	1 cut(s)	389
ScrFI	CCNGG	2 cut(s)	537, 603
SfaNI	GCATC	4 cut(s)	530, 556, 826, 862
SfcI	CTRYAG	1 cut(s)	359
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	2 cut(s)	427, 704
SsiI	CCGC	3 cut(s)	279, 378, 387
StyD4I	CCNGG	2 cut(s)	535, 601
StyI	CCWWGG	2 cut(s)	42, 229
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	5 cut(s)	33, 78, 117, 148, 708
TasI	AATT	2 cut(s)	427, 704
TatI	WGTACW	2 cut(s)	285, 412
TauI	GCSGC	2 cut(s)	281, 390
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	6 cut(s)	19, 22, 275, 358, 361, 623
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	17, 255, 538
TspRI	CASTG	1 cut(s)	798
XapI	RAATTY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	3 cut(s)	49, 682, 730
XhoI	CTCGAG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.