Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

265864 .. 268727

Gene Structure 2864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAACTCCTCCCCCTCCGGCTCCGCCTCTGCCTCCCAGCTGCTGTCGCTTGAGAAAGTGAAGCATCTTCTAGATTCCACCCAAGCCTTTCTCTTCGATTGCGATGGTGTGATTTGGAAGGGCGACAAGCTTATCGATGGCGTGCCTCATACACTTGACTTTCTTCGATCAAAGGGGAAGAAGCTGGTGTTCGTTACAAACAACTCCACAAAATCAAGAAAGCAATACGCCAACAAGTTCCTTTCCCTTGGCATTTCAGTTACCGAGGACGAGATATTCTCTTCATCCTTTGCTGCCGCAATGTACTTGCAACTCATTCACTTTCCCAAACACAAGAAGGTTTATGTAATAGGTGAACAGGGCATAGTAGAAGAGCTGCAGCTTGCTGGCTTTACAGCTCTTGGTGGCCCTGAAGATGGTAAAAAGACGGTACAGCTGAAATCAAATTGCCTCTTTGAACATGATAAAAGTGTTGGAGCAGTTGTTGTTGGTCTTGACCAGTATATCAACTATTACAAACTTCAATATGGAACTCTTTGTATACGTGAAAATCCAGGATGCCTTTTCATTGCAACCAATCGTGATGCAGTTGGACACATGACTGACTTACAAGAGTGGCCTGGTGCTGGGTGTATGGTAGCTGCTATATGCGGAACCACTCAGAAGGAGCCTATTGTAGTTGGAAAGCCATCCACTTTCCTCATGGACTTTTTACTAAAGAAATTTGACATTAGTTGCTCCAAAATGTGTATGGTGGGTGATAGATTAGATACTGATATATTGTTTGGACAGAATGCTGGGTGCAGAACTCTGCTCGTTCTTTCAGGTGTTACAACGCTATCCGCTCTTCAAGACGCTTCAAATACGACTCATCCAGATTATTATACAAGCAAGTTGTCCGACATATTTGAACTTATGCAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

309

Amino Acids

33.77

Weight (kDa)

6.38

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	28 - 267	2.8e-14	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	30 - 132	1.9e-34	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	227 - 301	1.1e-20	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	845
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	4 cut(s)	24, 297, 651, 843
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	305, 432
AfiI	CCNNNNNNNGG	2 cut(s)	416, 626
AgsI	TTSAA	5 cut(s)	458, 524, 851, 861, 911
AjnI	CCWGG	2 cut(s)	553, 619
AluBI	AGCT	8 cut(s)	40, 130, 184, 376, 382, 398, 436, 641
AluI	AGCT	8 cut(s)	40, 130, 184, 376, 382, 398, 436, 641
AlwNI	CAGNNNCTG	1 cut(s)	43
AoxI	GGCC	2 cut(s)	406, 617
ApeKI	GCWGC	5 cut(s)	40, 293, 376, 379, 641
ApoI	RAATTY	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	365, 770
BbvI	GCAGC	5 cut(s)	27, 280, 363, 391, 628
BccI	CCATC	4 cut(s)	98, 131, 410, 697
BciT130I	CCWGG	2 cut(s)	555, 621
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	377
BisI	GCNGC	6 cut(s)	41, 294, 297, 377, 380, 642
BlsI	GCNGC	6 cut(s)	42, 295, 298, 378, 381, 643
Bme1390I	CCNGG	2 cut(s)	555, 621
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	3 cut(s)	22, 655, 669
BmrFI	CCNGG	2 cut(s)	555, 621
BmsI	GCATC	3 cut(s)	73, 548, 574
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpuEI	CTTGAG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	247, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 626
Bse1I	ACTGG	1 cut(s)	499
Bse3DI	GCAATG	2 cut(s)	306, 567
BseBI	CCWGG	2 cut(s)	555, 621
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	247, 264
BseGI	GGATG	4 cut(s)	284, 563, 689, 871
BseLI	CCNNNNNNNGG	2 cut(s)	416, 626
BseMI	GCAATG	2 cut(s)	306, 567
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	1 cut(s)	499
BseXI	GCAGC	5 cut(s)	27, 280, 363, 391, 628
BseYI	CCCAGC	3 cut(s)	36, 626, 797
BsgI	GTGCAG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	408, 619
BshVI	ATCGAT	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	416, 626
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	2 cut(s)	408, 619
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	4 cut(s)	24, 297, 651, 843
BspANI	GGCC	2 cut(s)	408, 619
BspCNI	CTCAG	1 cut(s)	673
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	22, 655, 669
BspMAI	CTGCAG	1 cut(s)	381
BspQI	GCTCTTC	2 cut(s)	366, 852
BsrBI	CCGCTC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	306, 567
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	247, 264
BssMI	GATC	1 cut(s)	167
BssNAI	GTATAC	1 cut(s)	542
BssT1I	CCWWGG	1 cut(s)	247
Bst1107I	GTATAC	1 cut(s)	542
Bst2UI	CCWGG	2 cut(s)	555, 621
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	4 cut(s)	98, 286, 366, 852
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	143, 384, 388
BstDEI	CTNAG	1 cut(s)	660
BstF5I	GGATG	4 cut(s)	284, 563, 689, 871
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	555, 621
BstSCI	CCNGG	2 cut(s)	553, 619
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	5 cut(s)	27, 280, 363, 391, 628
BstZ17I	GTATAC	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	408, 619
BsuTUI	ATCGAT	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	4 cut(s)	284, 563, 689, 871
Cac8I	GCNNGC	3 cut(s)	143, 384, 388
CaiI	CAGNNNCTG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	2 cut(s)	304, 431
CviAII	CATG	3 cut(s)	461, 598, 703
CviQI	GTAC	2 cut(s)	304, 431
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
Eam1104I	CTCTTC	4 cut(s)	98, 286, 366, 852
EarI	CTCTTC	4 cut(s)	98, 286, 366, 852
EciI	GGCGGA	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	553, 619
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	3 cut(s)	464, 601, 706
FatI	CATG	3 cut(s)	460, 597, 702
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	6 cut(s)	41, 294, 297, 377, 380, 642
FokI	GGATG	4 cut(s)	271, 570, 676, 858
Fsp4HI	GCNGC	6 cut(s)	41, 294, 297, 377, 380, 642
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	6 cut(s)	41, 294, 297, 377, 380, 642
GsaI	CCCAGC	3 cut(s)	40, 630, 801
HaeIII	GGCC	2 cut(s)	408, 619
HapII	CCGG	1 cut(s)	18
HgaI	GACGC	1 cut(s)	863
Hin1II	CATG	3 cut(s)	464, 601, 706
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	2 cut(s)	74, 868
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	365, 770
Hpy166II	GTNNAC	2 cut(s)	356, 542
Hpy188I	TCNGA	2 cut(s)	663, 901
Hpy188III	TCNNGA	6 cut(s)	71, 216, 494, 581, 851, 875
Hpy8I	GTNNAC	2 cut(s)	356, 542
HpyAV	CCTTC	3 cut(s)	112, 331, 658
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	6 cut(s)	310, 379, 572, 587, 804, 919
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	3 cut(s)	464, 601, 706
Kzo9I	GATC	1 cut(s)	167
LguI	GCTCTTC	2 cut(s)	366, 852
LmnI	GCTCC	4 cut(s)	26, 476, 667, 743
Lsp1109I	GCAGC	5 cut(s)	27, 280, 363, 391, 628
LweI	GCATC	3 cut(s)	73, 548, 574
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	3 cut(s)	193, 259, 829
MalI	GATC	1 cut(s)	169
MbiI	CCGCTC	1 cut(s)	845
MboI	GATC	1 cut(s)	167
MboII	GAAGA	8 cut(s)	59, 85, 155, 190, 273, 383, 425, 839
MluCI	AATT	2 cut(s)	445, 722
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	4 cut(s)	454, 571, 661, 924
MnlI	CCTC	8 cut(s)	19, 25, 37, 43, 156, 259, 461, 710
MspA1I	CMGCKG	2 cut(s)	40, 436
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	555, 621
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	2 cut(s)	555, 621
MwoI	GCNNNNNNNGC	1 cut(s)	46
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	464, 601, 706
NlaIV	GGNNCC	3 cut(s)	22, 655, 669
PciSI	GCTCTTC	2 cut(s)	366, 852
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	6 cut(s)	42, 295, 298, 378, 381, 643
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
Ppu21I	YACGTR	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	553, 619
PspFI	CCCAGC	3 cut(s)	36, 626, 797
PspGI	CCWGG	2 cut(s)	553, 619
PspN4I	GGNNCC	3 cut(s)	22, 655, 669
PspPI	GGNCC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	43
PvuII	CAGCTG	2 cut(s)	40, 436
RsaI	GTAC	2 cut(s)	305, 432
RsaNI	GTAC	2 cut(s)	304, 431
SapI	GCTCTTC	2 cut(s)	366, 852
SatI	GCNGC	6 cut(s)	41, 294, 297, 377, 380, 642
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	2 cut(s)	555, 621
SfaNI	GCATC	3 cut(s)	73, 548, 574
SfcI	CTRYAG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	445, 722
SsiI	CCGC	4 cut(s)	24, 297, 651, 843
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	553, 619
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	3 cut(s)	96, 135, 166
TasI	AATT	2 cut(s)	445, 722
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	74
TseI	GCWGC	5 cut(s)	40, 293, 376, 379, 641
TspDTI	ATGAA	3 cut(s)	17, 273, 556
XapI	RAATTY	1 cut(s)	722
XbaI	TCTAGA	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	2 cut(s)	700, 748
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.