Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

344383 .. 347757

Gene Structure 3375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAACTCCTCCCCCTCCGCCTCCCAGCTGCTGTCTCTTGAGAAAGTGAAGCATCTTCTAGATTCCACCCAGGCCTTTCTCTTCGATTGCGATGGTGTGATTTGGAAGGGCGACAAGCTTATCAATGGCGTGCCTCATACACTTGACTTTCTTCGATCAAAGGGGAAGAAGCTGGTGTTCGTTACAAACAACTCCACAAAATCAAGAAAGCAATACGCCAACAAGTTCCTTTCCCTTGGCATTTCAGTTACCGAGGACGAGATATTCTCTTCATCCTTTGCTGCCGCAATGTACTTGCAACTCATTCACTTTCCCAAACACAAGAAGGTTTATGTAATAGGTGAACAGGGCATATTAGAAGAGCTGCAGCTTGCTGGCTTTACAGCTCTTGGTGGCCCTGAAGATGGTAAAAAGACAGTACAGCTGAAATCAAATTGCCTCTTTGAACATGATAAAAGTGTTGGAGCAGTTGTTGTTGGTCTTGACCAGTATATCAACTATTACAAACTTCAATATGGAACTCTTTGTATACGTGAAAATCCAGGATGCCTTTTCATTGCGACCAATCGTGATGCAGTTGGACACATGACTGACTTACAAGAGTGGCCTGGTGCTGGGTGTATGGTAGCTGCTATATGTGGAACCACTCAGAAGGAGCCTATTGTAGTTGGAAAGCCGTCCACTTTCCTCATGGACTTTTTACTAAAGAAATTCGACATTAGTTGCTCCAAAATGTGTATGGTGGGTGATAGATTAGATACTGATATATTGTTTGGACAGAATGCTGGGTGCAGAACTCTGCTCGTTCTTTCAGGTGTTACAACGCTATCCGCTCTTCAAGACGCTTCAAATAAGACTCATCCAGATTATTATACAAGCAAGTTGTCCGACATATTTGAACTCATGCAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

304

Amino Acids

33.5

Weight (kDa)

7.02

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	24 - 263	2.7e-14	haloacid dehalogenase-like hydrolase
Hydrolase_6	PF13344	26 - 128	3.2e-34	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	223 - 297	8e-21	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	833
AccI	GTMKAC	1 cut(s)	529
AciI	CCGC	3 cut(s)	18, 285, 831
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	1 cut(s)	420
AfaI	GTAC	2 cut(s)	293, 420
AfiI	CCNNNNNNNGG	2 cut(s)	404, 614
AgsI	TTSAA	5 cut(s)	446, 512, 839, 849, 899
AjnI	CCWGG	3 cut(s)	69, 541, 607
AluBI	AGCT	8 cut(s)	28, 118, 172, 364, 370, 386, 424, 629
AluI	AGCT	8 cut(s)	28, 118, 172, 364, 370, 386, 424, 629
Alw26I	GTCTC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	72, 394, 605
ApeKI	GCWGC	5 cut(s)	28, 281, 364, 367, 629
ApoI	RAATTY	1 cut(s)	710
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	353, 758
BbvI	GCAGC	5 cut(s)	15, 268, 351, 379, 616
BccI	CCATC	2 cut(s)	86, 398
BceAI	ACGGC	1 cut(s)	661
BciT130I	CCWGG	3 cut(s)	71, 543, 609
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	6 cut(s)	29, 282, 285, 365, 368, 630
BlsI	GCNGC	6 cut(s)	30, 283, 286, 366, 369, 631
Bme1390I	CCNGG	3 cut(s)	71, 543, 609
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	2 cut(s)	643, 657
BmrFI	CCNGG	3 cut(s)	71, 543, 609
BmsI	GCATC	3 cut(s)	61, 536, 562
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	69, 235, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 614
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	2 cut(s)	294, 555
BseBI	CCWGG	3 cut(s)	71, 543, 609
BseDI	CCNNGG	3 cut(s)	69, 235, 252
BseGI	GGATG	3 cut(s)	272, 551, 859
BseLI	CCNNNNNNNGG	2 cut(s)	404, 614
BseMI	GCAATG	2 cut(s)	294, 555
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	5 cut(s)	15, 268, 351, 379, 616
BseYI	CCCAGC	3 cut(s)	24, 614, 785
BsgI	GTGCAG	1 cut(s)	811
BshFI	GGCC	3 cut(s)	74, 396, 607
BslI	CCNNNNNNNGG	2 cut(s)	404, 614
BsmAI	GTCTC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	74, 396, 607
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	3 cut(s)	18, 285, 831
BspANI	GGCC	3 cut(s)	74, 396, 607
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	643, 657
BspMAI	CTGCAG	1 cut(s)	369
BspQI	GCTCTTC	2 cut(s)	354, 840
BsrBI	CCGCTC	1 cut(s)	833
BsrDI	GCAATG	2 cut(s)	294, 555
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	3 cut(s)	69, 235, 252
BssMI	GATC	1 cut(s)	155
BssNAI	GTATAC	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	235
Bst1107I	GTATAC	1 cut(s)	530
Bst2UI	CCWGG	3 cut(s)	71, 543, 609
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	4 cut(s)	86, 274, 354, 840
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	131, 372, 376
BstDEI	CTNAG	1 cut(s)	648
BstF5I	GGATG	3 cut(s)	272, 551, 859
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	155
BstNI	CCWGG	3 cut(s)	71, 543, 609
BstSCI	CCNGG	3 cut(s)	69, 541, 607
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	5 cut(s)	15, 268, 351, 379, 616
BstZ17I	GTATAC	1 cut(s)	530
BsuRI	GGCC	3 cut(s)	74, 396, 607
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	272, 551, 859
Cac8I	GCNNGC	3 cut(s)	131, 372, 376
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	292, 419
CviAII	CATG	4 cut(s)	449, 586, 691, 904
CviQI	GTAC	2 cut(s)	292, 419
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eam1104I	CTCTTC	4 cut(s)	86, 274, 354, 840
EarI	CTCTTC	4 cut(s)	86, 274, 354, 840
EciI	GGCGGA	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	3 cut(s)	69, 541, 607
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	4 cut(s)	452, 589, 694, 907
FatI	CATG	4 cut(s)	448, 585, 690, 903
FblI	GTMKAC	1 cut(s)	529
Fnu4HI	GCNGC	6 cut(s)	29, 282, 285, 365, 368, 630
FokI	GGATG	3 cut(s)	259, 558, 846
Fsp4HI	GCNGC	6 cut(s)	29, 282, 285, 365, 368, 630
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	6 cut(s)	29, 282, 285, 365, 368, 630
GsaI	CCCAGC	3 cut(s)	28, 618, 789
HaeIII	GGCC	3 cut(s)	74, 396, 607
HgaI	GACGC	1 cut(s)	851
Hin1II	CATG	4 cut(s)	452, 589, 694, 907
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	62, 856
HphI	GGTGA	2 cut(s)	353, 758
Hpy166II	GTNNAC	3 cut(s)	344, 530, 681
Hpy188I	TCNGA	2 cut(s)	651, 889
Hpy188III	TCNNGA	7 cut(s)	38, 59, 204, 482, 569, 839, 863
Hpy8I	GTNNAC	3 cut(s)	344, 530, 681
HpyAV	CCTTC	3 cut(s)	100, 319, 646
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	5 cut(s)	298, 367, 575, 792, 907
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	4 cut(s)	452, 589, 694, 907
Kzo9I	GATC	1 cut(s)	155
LguI	GCTCTTC	2 cut(s)	354, 840
LmnI	GCTCC	3 cut(s)	464, 655, 731
Lsp1109I	GCAGC	5 cut(s)	15, 268, 351, 379, 616
LweI	GCATC	3 cut(s)	61, 536, 562
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	3 cut(s)	181, 247, 817
MalI	GATC	1 cut(s)	157
MbiI	CCGCTC	1 cut(s)	833
MboI	GATC	1 cut(s)	155
MboII	GAAGA	8 cut(s)	47, 73, 143, 178, 261, 371, 413, 827
MluCI	AATT	2 cut(s)	433, 710
MlyI	GAGTC	1 cut(s)	850
MmeI	TCCRAC	4 cut(s)	442, 559, 649, 912
MnlI	CCTC	7 cut(s)	19, 25, 31, 144, 247, 449, 698
MspA1I	CMGCKG	2 cut(s)	28, 424
MspR9I	CCNGG	3 cut(s)	71, 543, 609
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	3 cut(s)	71, 543, 609
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	452, 589, 694, 907
NlaIV	GGNNCC	2 cut(s)	643, 657
PceI	AGGCCT	1 cut(s)	74
PciSI	GCTCTTC	2 cut(s)	354, 840
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	1 cut(s)	62
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	6 cut(s)	30, 283, 286, 366, 369, 631
PleI	GAGTC	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	850
Ppu21I	YACGTR	1 cut(s)	533
Psp6I	CCWGG	3 cut(s)	69, 541, 607
PspFI	CCCAGC	3 cut(s)	24, 614, 785
PspGI	CCWGG	3 cut(s)	69, 541, 607
PspN4I	GGNNCC	2 cut(s)	643, 657
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	31
PvuII	CAGCTG	2 cut(s)	28, 424
RsaI	GTAC	2 cut(s)	293, 420
RsaNI	GTAC	2 cut(s)	292, 419
SapI	GCTCTTC	2 cut(s)	354, 840
SatI	GCNGC	6 cut(s)	29, 282, 285, 365, 368, 630
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	850
ScrFI	CCNGG	3 cut(s)	71, 543, 609
SfaNI	GCATC	3 cut(s)	61, 536, 562
SfcI	CTRYAG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	433, 710
SseBI	AGGCCT	1 cut(s)	74
SsiI	CCGC	3 cut(s)	18, 285, 831
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	69, 541, 607
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	84, 154, 714
TasI	AATT	2 cut(s)	433, 710
TatI	WGTACW	2 cut(s)	291, 418
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	62
TseI	GCWGC	5 cut(s)	28, 281, 364, 367, 629
TspDTI	ATGAA	3 cut(s)	17, 261, 544
XapI	RAATTY	1 cut(s)	710
XbaI	TCTAGA	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	2 cut(s)	688, 736
XmiI	GTMKAC	1 cut(s)	529
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.