Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

204369 .. 208226

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G002800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAACTCCTCCCCTGCCCAGCTGCTGTCTGCCCAGAACGTGAACCAGCTCCTCGATTCTGTCCAAGCTTTTCTCTTCGACTGCGACGGTGTGATTTGGAAGGGCGATAAGCTGATCGATGGTGTCCCTGAGACACTGCACATGCTTCGATCAAAGGGGAAGAAGCTGGTGTTCGTTACCAACAATTCCACAAAATCAAGAAGCCAATACGCCAACAAGTTCCTTTCTCTTGGCATTTCGGTTACTGAGGATGAGATATTCTCTTCATCCTTTGCCGCAGCTATGTACTTGCAACTCATTAACTTCCCCCAACACAAAAAGGTTTATGTAATAGGGGAACAAGGTATTTTAGAAGAGCTGCAGCTTGCTGGTTTTACAGCTCTTGGTGGCCCTGAAGATGGTAAAAAAACGGCACAACTGAAATCAAATTGCCTTTTTGAACATGATAAGAGTGTTGGAGCAGTTGTGGTTGGACTAGACCAGTATGTTAACTATTACAAGCTTCAATATGGAACCCTTTGCATACGTGAAAATCCGGGATGCCTTTTCATTGCAACCAATCGAGATGCAGTTGGACACATGACTGATTTACAAGAATGGCCCGGTGCTGGGTGTATGGTAGCTGCTATCTGTGGATCCACCCAGAAGGAGCCTATTGTAGTTGGAAAGCCCTCTAATTTCCTGATGGAATTTTTACTAAAGAAATTCGATGTTAGTTGCTCCAAAATGTGTATGGTGGGTGATAGATTAGATACTGATATATTGTTTGGCCAGAATGCTGGCTGCAGAACTCTCCTCGTTCTTTCAGGTGTGACGACTGAATCCGTTCTTCAGGACCCTTCAAATAAGACTCAACCAGAGTACTATACAAGCAAGGTTTCCGACATGTTTGACTTGCTGCGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

303

Amino Acids

33.21

Weight (kDa)

5.64

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	276, 901
AclWI	GGATC	2 cut(s)	630, 643
AcoI	YGGCCR	2 cut(s)	769, 902
AcsI	RAATTY	2 cut(s)	689, 704
AcuI	CTGAAG	2 cut(s)	414, 815
AfaI	GTAC	2 cut(s)	287, 863
AfiI	CCNNNNNNNGG	3 cut(s)	398, 608, 609
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	3 cut(s)	440, 506, 843
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	2 cut(s)	630, 643
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	4 cut(s)	388, 599, 769, 902
ApeKI	GCWGC	7 cut(s)	22, 278, 358, 361, 623, 783, 898
ApoI	RAATTY	2 cut(s)	689, 704
Asp700I	GAANNNNTTC	1 cut(s)	825
AspS9I	GGNCC	3 cut(s)	389, 600, 835
AsuC2I	CCSGG	2 cut(s)	537, 603
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	835
BalI	TGGCCA	1 cut(s)	771
BamHI	GGATCC	1 cut(s)	635
BbvI	GCAGC	7 cut(s)	9, 290, 345, 373, 610, 770, 885
BccI	CCATC	3 cut(s)	113, 392, 679
BceAI	ACGGC	2 cut(s)	426, 889
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BcnI	CCSGG	2 cut(s)	537, 603
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	2 cut(s)	359, 784
BisI	GCNGC	9 cut(s)	23, 276, 279, 359, 362, 624, 784, 899, 902
BlsI	GCNGC	9 cut(s)	24, 277, 280, 360, 363, 625, 785, 900, 903
BmcAI	AGTACT	1 cut(s)	863
Bme1390I	CCNGG	2 cut(s)	537, 603
Bme18I	GGWCC	1 cut(s)	835
BmgT120I	GGNCC	3 cut(s)	389, 600, 835
BmiI	GGNNCC	4 cut(s)	514, 637, 651, 837
BmrFI	CCNGG	2 cut(s)	537, 603
BmsI	GCATC	2 cut(s)	530, 556
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpuMI	CCSGG	2 cut(s)	537, 603
Bsa29I	ATCGAT	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	527
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 608, 609
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	117
BseGI	GGATG	3 cut(s)	256, 266, 545
BseLI	CCNNNNNNNGG	3 cut(s)	398, 608, 609
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	120, 237
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	41, 785
BseX3I	CGGCCG	1 cut(s)	902
BseXI	GCAGC	7 cut(s)	9, 290, 345, 373, 610, 770, 885
BseYI	CCCAGC	2 cut(s)	18, 608
BsgI	GTGCAG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	905
BshFI	GGCC	4 cut(s)	390, 601, 771, 904
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	905
BsiSI	CCGG	2 cut(s)	536, 603
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	3 cut(s)	398, 608, 609
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	4 cut(s)	390, 601, 771, 904
Bsp143I	GATC	3 cut(s)	114, 149, 635
BspACI	CCGC	2 cut(s)	276, 901
BspANI	GGCC	4 cut(s)	390, 601, 771, 904
BspCNI	CTCAG	2 cut(s)	121, 238
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	514, 637, 651, 837
BspMAI	CTGCAG	2 cut(s)	363, 788
BspPI	GGATC	2 cut(s)	630, 643
BspQI	GCTCTTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	481
BssMI	GATC	3 cut(s)	114, 149, 635
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	3 cut(s)	80, 268, 348
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	366, 781
BstDEI	CTNAG	2 cut(s)	129, 246
BstF5I	GGATG	3 cut(s)	256, 266, 545
BstKTI	GATC	3 cut(s)	117, 152, 638
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	3 cut(s)	114, 149, 635
BstMCI	CGRYCG	1 cut(s)	905
BstNSI	RCATGY	2 cut(s)	145, 889
BstSCI	CCNGG	2 cut(s)	535, 601
BstSFI	CTRYAG	2 cut(s)	359, 784
BstV1I	GCAGC	7 cut(s)	9, 290, 345, 373, 610, 770, 885
BstX2I	RGATCY	1 cut(s)	635
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	1 cut(s)	635
BstZI	CGGCCG	1 cut(s)	902
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	4 cut(s)	390, 601, 771, 904
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	256, 266, 545
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	366, 781
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	3 cut(s)	389, 600, 835
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	286, 862
CviAII	CATG	4 cut(s)	142, 443, 580, 886
CviQI	GTAC	2 cut(s)	286, 862
DdeI	CTNAG	2 cut(s)	129, 246
DpnI	GATC	3 cut(s)	116, 151, 637
DpnII	GATC	3 cut(s)	114, 149, 635
EaeI	YGGCCR	2 cut(s)	769, 902
EagI	CGGCCG	1 cut(s)	902
Eam1104I	CTCTTC	3 cut(s)	80, 268, 348
EarI	CTCTTC	3 cut(s)	80, 268, 348
EclXI	CGGCCG	1 cut(s)	902
Eco47I	GGWCC	1 cut(s)	835
Eco52I	CGGCCG	1 cut(s)	902
Eco57I	CTGAAG	2 cut(s)	414, 815
EcoO109I	RGGNCCY	1 cut(s)	835
FaeI	CATG	4 cut(s)	145, 446, 583, 889
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	4 cut(s)	141, 442, 579, 885
Fnu4HI	GCNGC	9 cut(s)	23, 276, 279, 359, 362, 624, 784, 899, 902
FokI	GGATG	3 cut(s)	253, 263, 552
Fsp4HI	GCNGC	9 cut(s)	23, 276, 279, 359, 362, 624, 784, 899, 902
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	9 cut(s)	23, 276, 279, 359, 362, 624, 784, 899, 902
GsaI	CCCAGC	2 cut(s)	22, 612
HaeIII	GGCC	4 cut(s)	390, 601, 771, 904
HapII	CCGG	2 cut(s)	536, 603
Hin1II	CATG	4 cut(s)	145, 446, 583, 889
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	66, 500
HinfI	GANTC	3 cut(s)	56, 821, 850
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	536, 603
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	2 cut(s)	43, 490
Hpy188I	TCNGA	1 cut(s)	883
Hpy188III	TCNNGA	4 cut(s)	198, 563, 682, 833
Hpy8I	GTNNAC	2 cut(s)	43, 490
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	94, 640, 849
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	39, 526
HpyCH4V	TGCA	7 cut(s)	139, 292, 361, 522, 554, 569, 786
HpyF3I	CTNAG	2 cut(s)	129, 246
HpySE526I	ACGT	2 cut(s)	39, 526
Hsp92II	CATG	4 cut(s)	145, 446, 583, 889
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	114, 149, 635
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	4 cut(s)	54, 458, 649, 725
Lsp1109I	GCAGC	7 cut(s)	9, 290, 345, 373, 610, 770, 885
LweI	GCATC	2 cut(s)	530, 556
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	2 cut(s)	39, 526
MaeIII	GTNAC	3 cut(s)	175, 241, 811
MalI	GATC	3 cut(s)	116, 151, 637
MboI	GATC	3 cut(s)	114, 149, 635
MboII	GAAGA	6 cut(s)	67, 172, 255, 365, 407, 821
MflI	RGATCY	1 cut(s)	635
MlsI	TGGCCA	1 cut(s)	771
MluCI	AATT	5 cut(s)	184, 427, 676, 689, 704
MluNI	TGGCCA	1 cut(s)	771
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	5 cut(s)	436, 451, 553, 643, 906
MnlI	CCTC	5 cut(s)	19, 62, 241, 682, 806
Mox20I	TGGCCA	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	2 cut(s)	300, 489
Msp20I	TGGCCA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	2 cut(s)	536, 603
MspR9I	CCNGG	2 cut(s)	537, 603
Mva1269I	GAATGC	1 cut(s)	781
NciI	CCSGG	2 cut(s)	537, 603
NdeII	GATC	3 cut(s)	114, 149, 635
NlaIII	CATG	4 cut(s)	145, 446, 583, 889
NlaIV	GGNNCC	4 cut(s)	514, 637, 651, 837
NmuCI	GTSAC	1 cut(s)	811
NspI	RCATGY	2 cut(s)	145, 889
PciI	ACATGT	1 cut(s)	885
PciSI	GCTCTTC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	2 cut(s)	56, 821
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	9 cut(s)	24, 277, 280, 360, 363, 625, 785, 900, 903
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	527
PpuMI	RGGWCCY	1 cut(s)	835
PscI	ACATGT	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	835
PspFI	CCCAGC	2 cut(s)	18, 608
PspN4I	GGNNCC	4 cut(s)	514, 637, 651, 837
PspPI	GGNCC	3 cut(s)	389, 600, 835
PspPPI	RGGWCCY	1 cut(s)	835
PstI	CTGCAG	2 cut(s)	363, 788
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	287, 863
RsaNI	GTAC	2 cut(s)	286, 862
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	300, 489
SatI	GCNGC	9 cut(s)	23, 276, 279, 359, 362, 624, 784, 899, 902
Sau3AI	GATC	3 cut(s)	114, 149, 635
Sau96I	GGNCC	3 cut(s)	389, 600, 835
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	2 cut(s)	537, 603
SfaNI	GCATC	2 cut(s)	530, 556
SfcI	CTRYAG	2 cut(s)	359, 784
SinI	GGWCC	1 cut(s)	835
Sse9I	AATT	5 cut(s)	184, 427, 676, 689, 704
SsiI	CCGC	2 cut(s)	276, 901
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	535, 601
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	42, 529
TaqI	TCGA	6 cut(s)	54, 78, 117, 148, 562, 708
TasI	AATT	5 cut(s)	184, 427, 676, 689, 704
TatI	WGTACW	2 cut(s)	285, 861
TauI	GCSGC	2 cut(s)	278, 904
TfiI	GAWTC	2 cut(s)	56, 821
Tru1I	TTAA	2 cut(s)	300, 489
Tru9I	TTAA	2 cut(s)	300, 489
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	7 cut(s)	22, 278, 358, 361, 623, 783, 898
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	3 cut(s)	17, 255, 538
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	835
XapI	RAATTY	2 cut(s)	689, 704
XceI	RCATGY	2 cut(s)	145, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.