Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

220277 .. 223937

Gene Structure 3661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATGAACCAAACCAGAACAGGTGTGATTTGGAAGGGCGACAAGCTTATCGATGGCGTGCCTCATACACTTGACTTTCTTCGATCAAAGGGGAAGAAGCTGGTGTTCGTTACAAACAACTCCACAAAATCAAGAAAGCAATACGCCAACAAGTTCCTTTCCCTTGGCATTTCAGTTACCGAGGACGAGATATTCTCTTCATCCTTTGCTGCCGCAATGTACTTGCAACTCATTCACTTTCCCAAACACAAGAAGGTTTATGTAATAGGTGAGCAGGGCATATTAGAAGAGCTGCAGCTTGCTGGCTTTACAGCTCTTGGTGGCCCTGAAGATGGTAAAGAGACAGTACAGCTGAAATCAAATTGCCTCTTTGAACATGATAAAAGTGTTGGAGCAGTTGTTGTTGGTCTTGACCAGTATATCAACTATTACAAACTTCAATATGGAACTCTTTGTATACGTGAAAATCCAGGATGCCTTTTCATTGCGACCAATCGTGATGCAGTTGGACACATGACTGACTTACAAGAGTGGCCTGGTGCTGGGTGTATGGTAGCTGCCATATGTGGATCCACTCAGAAGGAGCCTATTGTAGTTGGAAAGCCATCCACTTTCCTCATGGACTTTTTACTAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

213

Amino Acids

23.59

Weight (kDa)

8.51

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	8 - 104	4.7e-30	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	457
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	564, 577
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	221, 348
AfiI	CCNNNNNNNGG	2 cut(s)	332, 542
AgsI	TTSAA	2 cut(s)	374, 440
AjnI	CCWGG	2 cut(s)	469, 535
AluBI	AGCT	7 cut(s)	46, 100, 292, 298, 314, 352, 557
AluI	AGCT	7 cut(s)	46, 100, 292, 298, 314, 352, 557
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	2 cut(s)	564, 577
AoxI	GGCC	2 cut(s)	322, 533
ApeKI	GCWGC	4 cut(s)	209, 292, 295, 557
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	569
BbvI	GCAGC	4 cut(s)	196, 279, 307, 544
BccI	CCATC	3 cut(s)	47, 326, 613
BciT130I	CCWGG	2 cut(s)	471, 537
BcoDI	GTCTC	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	5 cut(s)	210, 213, 293, 296, 558
BlsI	GCNGC	5 cut(s)	211, 214, 294, 297, 559
Bme1390I	CCNGG	2 cut(s)	471, 537
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	571, 585
BmrFI	CCNGG	2 cut(s)	471, 537
BmsI	GCATC	2 cut(s)	464, 490
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bsa29I	ATCGAT	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	163, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 542
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	2 cut(s)	222, 483
BseBI	CCWGG	2 cut(s)	471, 537
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	163, 180
BseGI	GGATG	3 cut(s)	200, 479, 605
BseLI	CCNNNNNNNGG	2 cut(s)	332, 542
BseMI	GCAATG	2 cut(s)	222, 483
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	4 cut(s)	196, 279, 307, 544
BseYI	CCCAGC	1 cut(s)	542
BshFI	GGCC	2 cut(s)	324, 535
BshVI	ATCGAT	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	332, 542
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	324, 535
Bsp143I	GATC	2 cut(s)	83, 569
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	324, 535
BspCNI	CTCAG	1 cut(s)	589
BspDI	ATCGAT	1 cut(s)	51
BspLI	GGNNCC	2 cut(s)	571, 585
BspMAI	CTGCAG	1 cut(s)	297
BspPI	GGATC	2 cut(s)	564, 577
BspQI	GCTCTTC	1 cut(s)	282
BsrDI	GCAATG	2 cut(s)	222, 483
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	163, 180
BssMI	GATC	2 cut(s)	83, 569
BssNAI	GTATAC	1 cut(s)	458
BssT1I	CCWWGG	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	471, 537
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	202, 282
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	59, 300, 304
BstDEI	CTNAG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	200, 479, 605
BstKTI	GATC	2 cut(s)	86, 572
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	83, 569
BstNI	CCWGG	2 cut(s)	471, 537
BstSCI	CCNGG	2 cut(s)	469, 535
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	4 cut(s)	196, 279, 307, 544
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BstZ17I	GTATAC	1 cut(s)	458
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	324, 535
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	200, 479, 605
Cac8I	GCNNGC	3 cut(s)	59, 300, 304
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	220, 347
CviAII	CATG	3 cut(s)	377, 514, 619
CviQI	GTAC	2 cut(s)	220, 347
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	2 cut(s)	85, 571
DpnII	GATC	2 cut(s)	83, 569
Eam1104I	CTCTTC	2 cut(s)	202, 282
EarI	CTCTTC	2 cut(s)	202, 282
Eco130I	CCWWGG	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	469, 535
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	380, 517, 622
FatI	CATG	3 cut(s)	376, 513, 618
FauNDI	CATATG	1 cut(s)	563
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	210, 213, 293, 296, 558
FokI	GGATG	3 cut(s)	187, 486, 592
Fsp4HI	GCNGC	5 cut(s)	210, 213, 293, 296, 558
GluI	GCNGC	5 cut(s)	210, 213, 293, 296, 558
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	324, 535
Hin1II	CATG	3 cut(s)	380, 517, 622
HindIII	AAGCTT	1 cut(s)	44
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	3 cut(s)	132, 410, 497
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	3 cut(s)	28, 247, 574
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	3 cut(s)	226, 295, 503
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	380, 517, 622
Kzo9I	GATC	2 cut(s)	83, 569
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	392, 583
Lsp1109I	GCAGC	4 cut(s)	196, 279, 307, 544
LweI	GCATC	2 cut(s)	464, 490
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	109, 175
MalI	GATC	2 cut(s)	85, 571
MboI	GATC	2 cut(s)	83, 569
MboII	GAAGA	5 cut(s)	71, 106, 189, 299, 341
MflI	RGATCY	1 cut(s)	569
MluCI	AATT	1 cut(s)	361
MmeI	TCCRAC	3 cut(s)	370, 487, 577
MnlI	CCTC	4 cut(s)	72, 175, 377, 626
MspA1I	CMGCKG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	471, 537
MvaI	CCWGG	2 cut(s)	471, 537
NdeI	CATATG	1 cut(s)	563
NdeII	GATC	2 cut(s)	83, 569
NlaIII	CATG	3 cut(s)	380, 517, 622
NlaIV	GGNNCC	2 cut(s)	571, 585
PciSI	GCTCTTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	5 cut(s)	211, 214, 294, 297, 559
Ppu21I	YACGTR	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	469, 535
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	469, 535
PspN4I	GGNNCC	2 cut(s)	571, 585
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	221, 348
RsaNI	GTAC	2 cut(s)	220, 347
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	5 cut(s)	210, 213, 293, 296, 558
Sau3AI	GATC	2 cut(s)	83, 569
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	471, 537
SfaNI	GCATC	2 cut(s)	464, 490
SfcI	CTRYAG	1 cut(s)	293
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	469, 535
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	51, 82
TasI	AATT	1 cut(s)	361
TatI	WGTACW	2 cut(s)	219, 346
TauI	GCSGC	1 cut(s)	215
TseI	GCWGC	4 cut(s)	209, 292, 295, 557
TspDTI	ATGAA	3 cut(s)	20, 189, 472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.