Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000385.1

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

34998 .. 37818

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000385.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgaactccttcccctccgactccggctcccagctgctgtctcttgagaaagtgaagcatcttctagattccacccaagcctttctcttcgattgcgatggtgtgatttggaagggcgacaagcttatcgatggcgtgcctcatacacttgactttcttcgatcaaaggggaagaagctggtgttcgttacaaacaactccacaaaatcaagaaagcaatacgccaacaagttcctttcccttggcatttcggttaccgaggacgagatattctcttcatcctttgctgccgcaatgtacttgcaactcattcactttcccaaacacaagaaggtttatgtaattggtgaacagggcatattagaagagctgcagcttgctggctttacagctcttggtggccctgaagatggtaaaaagacagtacagctgaaatcaaattgcctctttgaacatgataaaagtgttggagcagttgttgttggtcttgaccagtatatcaactattacaaacttcaatatggaactctttgtatacgtgaaaatccaggatgccttttcattgcgaccaatcgtgatgcagttggacacatgactgacttacaagagtggcctggtgctgggtgtatggtagctgctatatgtggaaccactcagaaggagcctattgtagttggaaagccatccactttccttatggactttttactaaagaaattcgacattagttgctccaaaatgtgtatggtgggtgatagattagatactgatatattgtttggacagaatgctgggtgcagaactctactcgttctttcaggtgttacaacgctatccgctcttcaagacgcttcaaataagactcatccagattattatacaagcaagttgtccgacatatttgaactcatgcaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

306

Amino Acids

33.75

Weight (kDa)

6.38

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	839
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	2 cut(s)	291, 837
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	2 cut(s)	299, 426
AfiI	CCNNNNNNNGG	2 cut(s)	410, 620
AgsI	TTSAA	5 cut(s)	452, 518, 845, 855, 905
AjnI	CCWGG	2 cut(s)	547, 613
AluBI	AGCT	8 cut(s)	34, 124, 178, 370, 376, 392, 430, 635
AluI	AGCT	8 cut(s)	34, 124, 178, 370, 376, 392, 430, 635
Alw26I	GTCTC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	400, 611
ApeKI	GCWGC	5 cut(s)	34, 287, 370, 373, 635
ApoI	RAATTY	1 cut(s)	716
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	359, 764
BbvI	GCAGC	5 cut(s)	21, 274, 357, 385, 622
BccI	CCATC	4 cut(s)	92, 125, 404, 691
BciT130I	CCWGG	2 cut(s)	549, 615
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	371
BisI	GCNGC	6 cut(s)	35, 288, 291, 371, 374, 636
BlsI	GCNGC	6 cut(s)	36, 289, 292, 372, 375, 637
Bme1390I	CCNGG	2 cut(s)	549, 615
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	28, 649, 663
BmrFI	CCNGG	2 cut(s)	549, 615
BmsI	GCATC	3 cut(s)	67, 542, 568
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpuEI	CTTGAG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	129
BsaAI	YACGTR	1 cut(s)	539
BsaJI	CCNNGG	2 cut(s)	241, 258
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 462, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	410, 620
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	2 cut(s)	300, 561
BseBI	CCWGG	2 cut(s)	549, 615
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	241, 258
BseGI	GGATG	4 cut(s)	278, 557, 683, 865
BseLI	CCNNNNNNNGG	2 cut(s)	410, 620
BseMI	GCAATG	2 cut(s)	300, 561
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	5 cut(s)	21, 274, 357, 385, 622
BseYI	CCCAGC	3 cut(s)	30, 620, 791
BsgI	GTGCAG	1 cut(s)	817
BshFI	GGCC	2 cut(s)	402, 613
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	410, 620
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	2 cut(s)	402, 613
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	2 cut(s)	291, 837
BspANI	GGCC	2 cut(s)	402, 613
BspCNI	CTCAG	1 cut(s)	667
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	3 cut(s)	28, 649, 663
BspMAI	CTGCAG	1 cut(s)	375
BspQI	GCTCTTC	2 cut(s)	360, 846
BsrBI	CCGCTC	1 cut(s)	839
BsrDI	GCAATG	2 cut(s)	300, 561
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	241, 258
BssMI	GATC	1 cut(s)	161
BssNAI	GTATAC	1 cut(s)	536
BssT1I	CCWWGG	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	536
Bst2UI	CCWGG	2 cut(s)	549, 615
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	4 cut(s)	92, 280, 360, 846
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	137, 378, 382
BstDEI	CTNAG	1 cut(s)	654
BstEII	GGTNACC	1 cut(s)	253
BstF5I	GGATG	4 cut(s)	278, 557, 683, 865
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	549, 615
BstPI	GGTNACC	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	547, 613
BstSFI	CTRYAG	1 cut(s)	371
BstV1I	GCAGC	5 cut(s)	21, 274, 357, 385, 622
BstZ17I	GTATAC	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	402, 613
BsuTUI	ATCGAT	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	4 cut(s)	278, 557, 683, 865
Cac8I	GCNNGC	3 cut(s)	137, 378, 382
CaiI	CAGNNNCTG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	2 cut(s)	298, 425
CviAII	CATG	3 cut(s)	455, 592, 910
CviQI	GTAC	2 cut(s)	298, 425
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eam1104I	CTCTTC	4 cut(s)	92, 280, 360, 846
EarI	CTCTTC	4 cut(s)	92, 280, 360, 846
Eco130I	CCWWGG	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	547, 613
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	3 cut(s)	458, 595, 913
FatI	CATG	3 cut(s)	454, 591, 909
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	6 cut(s)	35, 288, 291, 371, 374, 636
FokI	GGATG	4 cut(s)	265, 564, 670, 852
Fsp4HI	GCNGC	6 cut(s)	35, 288, 291, 371, 374, 636
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	6 cut(s)	35, 288, 291, 371, 374, 636
GsaI	CCCAGC	3 cut(s)	34, 624, 795
HaeIII	GGCC	2 cut(s)	402, 613
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	857
Hin1II	CATG	3 cut(s)	458, 595, 913
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	3 cut(s)	20, 68, 862
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	359, 764
Hpy166II	GTNNAC	2 cut(s)	350, 536
Hpy188I	TCNGA	3 cut(s)	19, 657, 895
Hpy188III	TCNNGA	7 cut(s)	44, 65, 210, 488, 575, 845, 869
Hpy8I	GTNNAC	2 cut(s)	350, 536
HpyAV	CCTTC	4 cut(s)	19, 106, 325, 652
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	5 cut(s)	304, 373, 581, 798, 913
HpyF3I	CTNAG	1 cut(s)	654
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	3 cut(s)	458, 595, 913
Kzo9I	GATC	1 cut(s)	161
LguI	GCTCTTC	2 cut(s)	360, 846
LmnI	GCTCC	4 cut(s)	32, 470, 661, 737
Lsp1109I	GCAGC	5 cut(s)	21, 274, 357, 385, 622
LweI	GCATC	3 cut(s)	67, 542, 568
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	3 cut(s)	187, 253, 823
MalI	GATC	1 cut(s)	163
MbiI	CCGCTC	1 cut(s)	839
MboI	GATC	1 cut(s)	161
MboII	GAAGA	8 cut(s)	53, 79, 149, 184, 267, 377, 419, 833
MluCI	AATT	3 cut(s)	342, 439, 716
MlyI	GAGTC	2 cut(s)	14, 856
MmeI	TCCRAC	5 cut(s)	42, 448, 565, 655, 918
MnlI	CCTC	4 cut(s)	25, 150, 253, 455
MroXI	GAANNNNTTC	1 cut(s)	8
MspA1I	CMGCKG	2 cut(s)	34, 430
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	2 cut(s)	549, 615
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	2 cut(s)	549, 615
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	3 cut(s)	458, 595, 913
NlaIV	GGNNCC	3 cut(s)	28, 649, 663
PciSI	GCTCTTC	2 cut(s)	360, 846
PctI	GAATGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	6 cut(s)	36, 289, 292, 372, 375, 637
PleI	GAGTC	2 cut(s)	14, 856
PpsI	GAGTC	2 cut(s)	14, 856
Ppu21I	YACGTR	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	547, 613
PspEI	GGTNACC	1 cut(s)	253
PspFI	CCCAGC	3 cut(s)	30, 620, 791
PspGI	CCWGG	2 cut(s)	547, 613
PspN4I	GGNNCC	3 cut(s)	28, 649, 663
PspPI	GGNCC	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	37
PvuII	CAGCTG	2 cut(s)	34, 430
RsaI	GTAC	2 cut(s)	299, 426
RsaNI	GTAC	2 cut(s)	298, 425
SapI	GCTCTTC	2 cut(s)	360, 846
SatI	GCNGC	6 cut(s)	35, 288, 291, 371, 374, 636
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	1 cut(s)	401
SchI	GAGTC	2 cut(s)	14, 856
ScrFI	CCNGG	2 cut(s)	549, 615
SfaNI	GCATC	3 cut(s)	67, 542, 568
SfcI	CTRYAG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	342, 439, 716
SsiI	CCGC	2 cut(s)	291, 837
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	547, 613
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	4 cut(s)	90, 129, 160, 720
TasI	AATT	3 cut(s)	342, 439, 716
TatI	WGTACW	2 cut(s)	297, 424
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	68
TseI	GCWGC	5 cut(s)	34, 287, 370, 373, 635
TspDTI	ATGAA	3 cut(s)	17, 267, 550
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	2 cut(s)	694, 742
XmiI	GTMKAC	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.