Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009838

Physical Location & Seq

Genomic Coordinates Forward (+)

220501 .. 223937

Gene Structure 3437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAACTCCTACCCCTCCGGCTCCGGCTCCGGCTCCGGCTCCCAGCTGCTGTCTCTTGAGAAAGTGAAGCATCTTCTAGATTCCACCCAAGCCTTTCTCTTCGATTGCGATGGTGTGATTTGGAAGGGCGACAAGCTTATCGATGGCGTGCCTCATACACTTGACTTTCTTCGATCAAAGGGGAAGAAGCTGGTGTTCGTTACAAACAACTCCACAAAATCAAGAAAGCAATACGCCAACAAGTTCCTTTCCCTTGGCATTTCAGTTACCGAGGACGAGATATTCTCTTCATCCTTTGCTGCCGCAATGTACTTGCAACTCATTCACTTTCCCAAACACAAGAAGGTTTATGTAATAGGTGAGCAGGGCATATTAGAAGAGCTGCAGCTTGCTGGCTTTACAGCTCTTGGTGGCCCTGAAGATGGTAAAGAGACAGTACAGCTGAAATCAAATTGCCTCTTTGAACATGATAAAAGTGTTGGAGCAGTTGTTGTTGGTCTTGACCAGTATATCAACTATTACAAACTTCAATATGGAACTCTTTGTATACGTGAAAATCCAGGATGCCTTTTCATTGCGACCAATCGTGATGCAGTTGGACACATGACTGACTTACAAGAGTGGCCTGGTTCTTTTCTGTCCTGTCCTTCAGAAAATAATCAACACAATGTGACTTTAGGCTTTACAGGAACTTTAGGCTTTACAGTTGGCTGTCCACTTTTGGTTTTCAGGTGCTGGGTGTATGGTAGCTGCCATATGTGGATCCACTCAGAAGGAGCCTATTGTAGTTGGAAAGCCATCCACTTTCCTCATGGACTTTTTACTAAAGAAATTCGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko01100 ko01110 ko01130 ko01200 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

Hydrolase_6 Hydrolase_like

Protein Analysis

280

Amino Acids

31.1

Weight (kDa)

6.85

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_6	PF13344	32 - 134	2.1e-34	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47760 AT5G47760
fragaria_vesca	FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250 FvH4_3g00250
malus_domestica	MD10G1340000.v1.1
prunus_persica	Prupe.4G002800_v2.0.a1 Prupe.4G002800_v2.0.a1
pyrus_communis	pycom10g28990
rosa_chinensis	RchiOBHm_Chr5g0000341
rosa_laevigata	RLG00000030860
rosa_multiflora	Rmu_ssc0000385.1_g000008
rosa_rugosa	Rorug04G0383300
rosa_samantha	Rh5AG002600 Rh5BG003900 Rh5CG002900 Rh5DG002900
rosa_wichuraiana	Rw5G000300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	1 cut(s)	303
AclWI	GGATC	2 cut(s)	757, 770
AcsI	RAATTY	1 cut(s)	831
AcuI	CTGAAG	2 cut(s)	438, 633
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	2 cut(s)	311, 438
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	464, 530
AjnI	CCWGG	2 cut(s)	559, 625
AluBI	AGCT	8 cut(s)	46, 136, 190, 382, 388, 404, 442, 750
AluI	AGCT	8 cut(s)	46, 136, 190, 382, 388, 404, 442, 750
Alw26I	GTCTC	2 cut(s)	57, 425
AlwI	GGATC	2 cut(s)	757, 770
AlwNI	CAGNNNCTG	2 cut(s)	49, 735
AoxI	GGCC	2 cut(s)	412, 623
ApeKI	GCWGC	5 cut(s)	46, 299, 382, 385, 750
ApoI	RAATTY	1 cut(s)	831
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	762
BbvI	GCAGC	5 cut(s)	33, 286, 369, 397, 737
BccI	CCATC	4 cut(s)	104, 137, 416, 806
BciT130I	CCWGG	2 cut(s)	561, 627
BcoDI	GTCTC	2 cut(s)	57, 425
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	383
BisI	GCNGC	6 cut(s)	47, 300, 303, 383, 386, 751
BlsI	GCNGC	6 cut(s)	48, 301, 304, 384, 387, 752
Bme1390I	CCNGG	2 cut(s)	561, 627
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	6 cut(s)	22, 28, 34, 40, 764, 778
BmrFI	CCNGG	2 cut(s)	561, 627
BmsI	GCATC	3 cut(s)	79, 554, 580
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	551
BsaJI	CCNNGG	2 cut(s)	253, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	505
Bse3DI	GCAATG	2 cut(s)	312, 573
BseBI	CCWGG	2 cut(s)	561, 627
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	253, 270
BseGI	GGATG	3 cut(s)	290, 569, 798
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	2 cut(s)	312, 573
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	5 cut(s)	33, 286, 369, 397, 737
BseYI	CCCAGC	2 cut(s)	42, 735
BshFI	GGCC	2 cut(s)	414, 625
BshVI	ATCGAT	1 cut(s)	141
BsiSI	CCGG	4 cut(s)	18, 24, 30, 36
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	2 cut(s)	57, 425
BsnI	GGCC	2 cut(s)	414, 625
Bsp143I	GATC	2 cut(s)	173, 762
BspACI	CCGC	1 cut(s)	303
BspANI	GGCC	2 cut(s)	414, 625
BspCNI	CTCAG	1 cut(s)	782
BspDI	ATCGAT	1 cut(s)	141
BspLI	GGNNCC	6 cut(s)	22, 28, 34, 40, 764, 778
BspMAI	CTGCAG	1 cut(s)	387
BspPI	GGATC	2 cut(s)	757, 770
BspQI	GCTCTTC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	312, 573
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	253, 270
BssMI	GATC	2 cut(s)	173, 762
BssNAI	GTATAC	1 cut(s)	548
BssT1I	CCWWGG	1 cut(s)	253
Bst1107I	GTATAC	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	561, 627
Bst4CI	ACNGT	2 cut(s)	436, 706
Bst6I	CTCTTC	3 cut(s)	104, 292, 372
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	149, 390, 394
BstDEI	CTNAG	1 cut(s)	769
BstF5I	GGATG	3 cut(s)	290, 569, 798
BstKTI	GATC	2 cut(s)	176, 765
BstMAI	GTCTC	2 cut(s)	57, 425
BstMBI	GATC	2 cut(s)	173, 762
BstNI	CCWGG	2 cut(s)	561, 627
BstSCI	CCNGG	2 cut(s)	559, 625
BstSFI	CTRYAG	1 cut(s)	383
BstV1I	GCAGC	5 cut(s)	33, 286, 369, 397, 737
BstX2I	RGATCY	1 cut(s)	762
BstYI	RGATCY	1 cut(s)	762
BstZ17I	GTATAC	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	414, 625
BsuTUI	ATCGAT	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	290, 569, 798
Cac8I	GCNNGC	3 cut(s)	149, 390, 394
CaiI	CAGNNNCTG	2 cut(s)	49, 735
Cfr13I	GGNCC	1 cut(s)	413
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	310, 437
CviAII	CATG	3 cut(s)	467, 604, 812
CviQI	GTAC	2 cut(s)	310, 437
DdeI	CTNAG	1 cut(s)	769
DpnI	GATC	2 cut(s)	175, 764
DpnII	GATC	2 cut(s)	173, 762
DraIII	CACNNNGTG	1 cut(s)	670
Eam1104I	CTCTTC	3 cut(s)	104, 292, 372
EarI	CTCTTC	3 cut(s)	104, 292, 372
Eco130I	CCWWGG	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	438, 633
EcoRII	CCWGG	2 cut(s)	559, 625
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	470, 607, 815
FatI	CATG	3 cut(s)	466, 603, 811
FauNDI	CATATG	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	6 cut(s)	47, 300, 303, 383, 386, 751
FokI	GGATG	3 cut(s)	277, 576, 785
Fsp4HI	GCNGC	6 cut(s)	47, 300, 303, 383, 386, 751
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	6 cut(s)	47, 300, 303, 383, 386, 751
GsaI	CCCAGC	2 cut(s)	46, 739
HaeIII	GGCC	2 cut(s)	414, 625
HapII	CCGG	4 cut(s)	18, 24, 30, 36
Hin1II	CATG	3 cut(s)	470, 607, 815
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	4 cut(s)	18, 24, 30, 36
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	2 cut(s)	548, 716
Hpy188I	TCNGA	2 cut(s)	652, 772
Hpy188III	TCNNGA	5 cut(s)	56, 77, 222, 500, 587
Hpy8I	GTNNAC	2 cut(s)	548, 716
HpyAV	CCTTC	4 cut(s)	118, 337, 657, 767
HpyCH4III	ACNGT	2 cut(s)	436, 706
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	3 cut(s)	316, 385, 593
HpyF3I	CTNAG	1 cut(s)	769
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	3 cut(s)	470, 607, 815
Kzo9I	GATC	2 cut(s)	173, 762
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	6 cut(s)	26, 32, 38, 44, 482, 776
Lsp1109I	GCAGC	5 cut(s)	33, 286, 369, 397, 737
LweI	GCATC	3 cut(s)	79, 554, 580
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	3 cut(s)	199, 265, 670
MalI	GATC	2 cut(s)	175, 764
MboI	GATC	2 cut(s)	173, 762
MboII	GAAGA	7 cut(s)	65, 91, 161, 196, 279, 389, 431
MflI	RGATCY	1 cut(s)	762
MluCI	AATT	2 cut(s)	451, 831
MmeI	TCCRAC	3 cut(s)	460, 577, 770
MnlI	CCTC	5 cut(s)	25, 162, 265, 467, 819
MspA1I	CMGCKG	2 cut(s)	46, 442
MspI	CCGG	4 cut(s)	18, 24, 30, 36
MspR9I	CCNGG	2 cut(s)	561, 627
MvaI	CCWGG	2 cut(s)	561, 627
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	2 cut(s)	173, 762
NlaIII	CATG	3 cut(s)	470, 607, 815
NlaIV	GGNNCC	6 cut(s)	22, 28, 34, 40, 764, 778
NmuCI	GTSAC	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	6 cut(s)	48, 301, 304, 384, 387, 752
Ppu21I	YACGTR	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	559, 625
PspFI	CCCAGC	2 cut(s)	42, 735
PspGI	CCWGG	2 cut(s)	559, 625
PspN4I	GGNNCC	6 cut(s)	22, 28, 34, 40, 764, 778
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	387
PstNI	CAGNNNCTG	2 cut(s)	49, 735
PsuI	RGATCY	1 cut(s)	762
PvuII	CAGCTG	2 cut(s)	46, 442
RsaI	GTAC	2 cut(s)	311, 438
RsaNI	GTAC	2 cut(s)	310, 437
SapI	GCTCTTC	1 cut(s)	372
SatI	GCNGC	6 cut(s)	47, 300, 303, 383, 386, 751
Sau3AI	GATC	2 cut(s)	173, 762
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	561, 627
SfaNI	GCATC	3 cut(s)	79, 554, 580
SfcI	CTRYAG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	451, 831
SsiI	CCGC	1 cut(s)	303
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	559, 625
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	436, 706
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	4 cut(s)	102, 141, 172, 835
TasI	AATT	2 cut(s)	451, 831
TatI	WGTACW	2 cut(s)	309, 436
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	5 cut(s)	46, 299, 382, 385, 750
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	3 cut(s)	17, 279, 562
XapI	RAATTY	1 cut(s)	831
XbaI	TCTAGA	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.