AT5G47900

Protein of unknown function (DUF1624)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003628
Physical Location & Seq
Forward (+)
19392166 .. 19395287
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47900.6

Sequence Viewer

Length: 1323 bp
ATGCGAACGAAACTAACGATGTACGAAGCAATCAAAGACAATGATGATAATGATCATCAATGGCGAGAGAAGAAAGACATTGAGTCTGCTCTTCAGATTTCTCGTTCTTCCTCTCTTCCTCCCGACAAGGAACGATTAGTTTCCCTTGATGTCTTTCGCGGTCTTACCGTCGCATTTATGATACTTGTGGATGATGTTGGAGGGATTTTACCATCTATTAATCATTCACCTTGGGATGGTGTCACACTAGCGGATTTTGTCATGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGAACTTGTCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTGAAACTTCTATTACTTGGTCTTTTTCTCCAAGGAGGATTTATTCATGGTCTTAATAACTTAACTTATGGAATAGATGTAGAAAAAATTAGACTCATGGGTATATTACAGAGAATAGCGATAGCATACTTAGTTGTTGCATTGTGCGAGATTTGGTTAAAGGGAAACCATAATGTTAGCTCAGAGTTATCTATGATCAAGAAATATAGATTTCATTGGGTGGTTGCTTTTGTTATCACAACTATATATTTGTCCTTGTTATATGGTTTATATGTACCTGACTGGGAGTATCAGATTTTAAAAGAAGACCAAGGATCAACATTGACAACATTCTTGAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACCAGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACAGAAAACCTGTATATGCACGAACCAAGCAATGCAGTATAAATTATCCAAACAATGGGCCATTACCTCCAGACGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAGTTCGTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAGGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTGATGTTAGGTCTCGCACTGAACCTCTTTGGAATGCATCTAAATAAACCTCTATACACATTGAGTTACATGTGTGTCACCTCAGGGGCCTCGGGATTTTTGTTATCCGCGATATACCTAATGGTCGACGTTTATGGATACAAACGAGCAAGCCTTGTGTTAGAGTGGATGGGAATACATGCCTTACCGATTTACGTTCTCATTGCTTGCAATCTTGTCTTTCTAATCATTCATGGATTCTACTGGAAGAACCCCATTAACAATCTCCTTCATTTAATCGGAATCGGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

440

Amino Acids

49.8

Weight (kDa)

9.13

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 848
AccI GTMKAC 1 cut(s) 1155
AccII CGCG 2 cut(s) 159, 1139
AciI CCGC 3 cut(s) 159, 251, 1137
AclWI GGATC 2 cut(s) 682, 990
AcoI YGGCCR 2 cut(s) 924, 958
AcuI CTGAAG 2 cut(s) 77, 722
AfaI GTAC 4 cut(s) 23, 636, 720, 794
AfiI CCNNNNNNNGG 3 cut(s) 236, 848, 979
AflII CTTAAG 1 cut(s) 910
AflIII ACRYGT 2 cut(s) 935, 1098
AgsI TTSAA 4 cut(s) 364, 697, 979, 1000
AhdI GACNNNNNGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 736
AloI GAACNNNNNNTCC 2 cut(s) 1000, 1032
AluBI AGCT 2 cut(s) 347, 540
AluI AGCT 2 cut(s) 347, 540
Alw26I GTCTC 2 cut(s) 295, 1046
AlwI GGATC 2 cut(s) 682, 990
Ama87I CYCGRG 1 cut(s) 1120
AoxI GGCC 5 cut(s) 851, 904, 924, 958, 1116
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 3 cut(s) 734, 851, 1116
AsuHPI GGTGA 3 cut(s) 219, 718, 1099
AvaI CYCGRG 1 cut(s) 1120
AvaII GGWCC 1 cut(s) 734
AxyI CCTNAGG 1 cut(s) 1111
BalI TGGCCA 2 cut(s) 926, 960
BbsI GAAGAC 2 cut(s) 672, 1019
BccI CCATC 4 cut(s) 220, 230, 916, 1192
BciT130I CCWGG 1 cut(s) 738
BciVI GTATCC 1 cut(s) 1160
BclI TGATCA 2 cut(s) 52, 555
BcoDI GTCTC 2 cut(s) 295, 1046
BfaI CTAG 3 cut(s) 248, 776, 941
BfoI RGCGCY 1 cut(s) 890
BfrI CTTAAG 1 cut(s) 910
BfuI GTATCC 1 cut(s) 1160
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 1 cut(s) 734
BmeRI GACNNNNNGTC 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 1120
BmgT120I GGNCC 3 cut(s) 734, 851, 1116
BmiI GGNNCC 1 cut(s) 1117
BmrFI CCNGG 1 cut(s) 738
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 1 cut(s) 1075
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 2 cut(s) 672, 1019
BpmI CTGGAG 1 cut(s) 846
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 4 cut(s) 230, 391, 670, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 848, 979
Bse1I ACTGG 3 cut(s) 647, 736, 1277
Bse21I CCTNAGG 1 cut(s) 1111
Bse3DI GCAATG 2 cut(s) 830, 1230
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 4 cut(s) 230, 391, 670, 1119
BseGI GGATG 4 cut(s) 196, 241, 969, 1203
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 236, 848, 979
BseMI GCAATG 2 cut(s) 830, 1230
BseMII CTCAG 2 cut(s) 555, 1125
BseNI ACTGG 3 cut(s) 647, 736, 1277
BsgI GTGCAG 1 cut(s) 935
Bsh1236I CGCG 2 cut(s) 159, 1139
BshFI GGCC 5 cut(s) 853, 906, 926, 960, 1118
BsiHKCI CYCGRG 1 cut(s) 1120
BslI CCNNNNNNNGG 3 cut(s) 236, 848, 979
BsmAI GTCTC 2 cut(s) 295, 1046
BsmI GAATGC 2 cut(s) 762, 1068
BsnI GGCC 5 cut(s) 853, 906, 926, 960, 1118
Bso31I GGTCTC 1 cut(s) 1046
BsoBI CYCGRG 1 cut(s) 1120
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 5 cut(s) 52, 356, 555, 674, 982
BspACI CCGC 3 cut(s) 159, 251, 1137
BspANI GGCC 5 cut(s) 853, 906, 926, 960, 1118
BspCNI CTCAG 2 cut(s) 554, 1124
BspFNI CGCG 2 cut(s) 159, 1139
BspLI GGNNCC 1 cut(s) 1117
BspPI GGATC 2 cut(s) 682, 990
BspQI GCTCTTC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 910
BspTNI GGTCTC 1 cut(s) 1046
BsrDI GCAATG 2 cut(s) 830, 1230
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 3 cut(s) 647, 736, 1277
BssECI CCNNGG 4 cut(s) 230, 391, 670, 1119
BssMI GATC 5 cut(s) 52, 356, 555, 674, 982
BssT1I CCWWGG 3 cut(s) 230, 391, 670
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 169, 767, 931
Bst6I CTCTTC 2 cut(s) 96, 120
BstAFI CTTAAG 1 cut(s) 910
BstAUI TGTACA 1 cut(s) 792
BstC8I GCNNGC 2 cut(s) 1180, 1237
BstDEI CTNAG 3 cut(s) 490, 541, 1111
BstF5I GGATG 4 cut(s) 196, 241, 969, 1203
BstFNI CGCG 2 cut(s) 159, 1139
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 5 cut(s) 55, 359, 558, 677, 985
BstMAI GTCTC 2 cut(s) 295, 1046
BstMBI GATC 5 cut(s) 52, 356, 555, 674, 982
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 3 cut(s) 939, 1102, 1211
BstSCI CCNGG 1 cut(s) 736
BstUI CGCG 2 cut(s) 159, 1139
BstV2I GAAGAC 2 cut(s) 672, 1019
Bsu36I CCTNAGG 1 cut(s) 1111
BsuI GTATCC 1 cut(s) 1160
BsuRI GGCC 5 cut(s) 853, 906, 926, 960, 1118
BtsCI GGATG 4 cut(s) 196, 241, 969, 1203
BtsIMutI CAGTG 2 cut(s) 729, 1046
Cac8I GCNNGC 2 cut(s) 1180, 1237
CfoI GCGC 1 cut(s) 889
Cfr13I GGNCC 3 cut(s) 734, 851, 1116
CseI GACGC 1 cut(s) 875
Csp6I GTAC 4 cut(s) 22, 635, 719, 793
CviAII CATG 8 cut(s) 262, 321, 407, 457, 936, 1099, 1208, 1262
CviJI RGCY 9 cut(s) 347, 540, 741, 853, 906, 926, 960, 1118, 1182
CviKI_1 RGCY 9 cut(s) 347, 540, 741, 853, 906, 926, 960, 1118, 1182
CviQI GTAC 4 cut(s) 22, 635, 719, 793
DdeI CTNAG 3 cut(s) 490, 541, 1111
DpnI GATC 5 cut(s) 54, 358, 557, 676, 984
DpnII GATC 5 cut(s) 52, 356, 555, 674, 982
DraI TTTAAA 1 cut(s) 660
DriI GACNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 2 cut(s) 924, 958
Eam1104I CTCTTC 2 cut(s) 96, 120
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 2 cut(s) 96, 120
Eco130I CCWWGG 3 cut(s) 230, 391, 670
Eco147I AGGCCT 1 cut(s) 906
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 77, 722
Eco81I CCTNAGG 1 cut(s) 1111
Eco88I CYCGRG 1 cut(s) 1120
EcoO109I RGGNCCY 1 cut(s) 1116
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 3 cut(s) 230, 391, 670
EcoT22I ATGCAT 1 cut(s) 1068
ErhI CCWWGG 3 cut(s) 230, 391, 670
FaeI CATG 8 cut(s) 265, 324, 410, 460, 939, 1102, 1211, 1265
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FatI CATG 8 cut(s) 261, 320, 406, 456, 935, 1098, 1207, 1261
FbaI TGATCA 2 cut(s) 52, 555
FblI GTMKAC 1 cut(s) 1155
FokI GGATG 4 cut(s) 203, 248, 956, 1210
FspBI CTAG 3 cut(s) 248, 776, 941
GlaI GCGC 1 cut(s) 888
GsuI CTGGAG 1 cut(s) 846
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 5 cut(s) 853, 906, 926, 960, 1118
HgaI GACGC 1 cut(s) 875
HhaI GCGC 1 cut(s) 889
Hin1II CATG 8 cut(s) 265, 324, 410, 460, 939, 1102, 1211, 1265
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HindIII AAGCTT 1 cut(s) 345
HinfI GANTC 8 cut(s) 83, 352, 453, 697, 780, 1000, 1266, 1311
HphI GGTGA 3 cut(s) 219, 718, 1099
Hpy166II GTNNAC 1 cut(s) 1156
Hpy188I TCNGA 7 cut(s) 96, 544, 654, 702, 1032, 1310, 1316
Hpy188III TCNNGA 5 cut(s) 122, 559, 694, 863, 1122
Hpy8I GTNNAC 1 cut(s) 1156
Hpy99I CGWCG 2 cut(s) 173, 1160
HpyAV CCTTC 4 cut(s) 697, 882, 896, 1307
HpyCH4III ACNGT 3 cut(s) 169, 767, 931
HpyCH4IV ACGT 3 cut(s) 1015, 1158, 1224
HpyCH4V TGCA 7 cut(s) 500, 749, 812, 828, 952, 1066, 1239
HpyF3I CTNAG 3 cut(s) 490, 541, 1111
HpySE526I ACGT 3 cut(s) 1015, 1158, 1224
Hsp92II CATG 8 cut(s) 265, 324, 410, 460, 939, 1102, 1211, 1265
HspAI GCGC 1 cut(s) 887
Ksp22I TGATCA 2 cut(s) 52, 555
Kzo9I GATC 5 cut(s) 52, 356, 555, 674, 982
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 874
LweI GCATC 1 cut(s) 1075
MaeI CTAG 3 cut(s) 248, 776, 941
MaeII ACGT 3 cut(s) 1015, 1158, 1224
MaeIII GTNAC 5 cut(s) 241, 725, 931, 1094, 1105
MalI GATC 5 cut(s) 54, 358, 557, 676, 984
MboI GATC 5 cut(s) 52, 356, 555, 674, 982
MboII GAAGA 7 cut(s) 82, 83, 99, 107, 677, 1019, 1288
MlsI TGGCCA 2 cut(s) 926, 960
MluCI AATT 2 cut(s) 447, 835
MluNI TGGCCA 2 cut(s) 926, 960
MlyI GAGTC 2 cut(s) 92, 447
MmeI TCCRAC 2 cut(s) 178, 733
Mox20I TGGCCA 2 cut(s) 926, 960
Mph1103I ATGCAT 1 cut(s) 1068
MscI TGGCCA 2 cut(s) 926, 960
MseI TTAA 8 cut(s) 219, 414, 422, 518, 659, 911, 1287, 1304
Msp20I TGGCCA 2 cut(s) 926, 960
MspCI CTTAAG 1 cut(s) 910
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 2 cut(s) 762, 1068
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 2 cut(s) 159, 1139
NdeII GATC 5 cut(s) 52, 356, 555, 674, 982
NlaIII CATG 8 cut(s) 265, 324, 410, 460, 939, 1102, 1211, 1265
NlaIV GGNNCC 1 cut(s) 1117
NmuCI GTSAC 3 cut(s) 241, 725, 1105
NsiI ATGCAT 1 cut(s) 1068
NspI RCATGY 3 cut(s) 939, 1102, 1211
PceI AGGCCT 1 cut(s) 906
PciI ACATGT 2 cut(s) 935, 1098
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 2 cut(s) 762, 1068
PfeI GAWTC 6 cut(s) 352, 697, 780, 1000, 1266, 1311
PflMI CCANNNNNTGG 1 cut(s) 848
PleI GAGTC 2 cut(s) 91, 447
PpsI GAGTC 2 cut(s) 91, 447
PscI ACATGT 2 cut(s) 935, 1098
PshBI ATTAAT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 1117
PspPI GGNCC 3 cut(s) 734, 851, 1116
RsaI GTAC 4 cut(s) 23, 636, 720, 794
RsaNI GTAC 4 cut(s) 22, 635, 719, 793
SalI GTCGAC 1 cut(s) 1154
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 8 cut(s) 219, 414, 422, 518, 659, 911, 1287, 1304
Sau3AI GATC 5 cut(s) 52, 356, 555, 674, 982
Sau96I GGNCC 3 cut(s) 734, 851, 1116
SchI GAGTC 2 cut(s) 92, 447
ScrFI CCNGG 1 cut(s) 738
SfaNI GCATC 1 cut(s) 1075
SinI GGWCC 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 910
SmoI CTYRAG 1 cut(s) 910
Sse9I AATT 2 cut(s) 447, 835
SseBI AGGCCT 1 cut(s) 906
SsiI CCGC 3 cut(s) 159, 251, 1137
SspMI CTAG 3 cut(s) 248, 776, 941
StuI AGGCCT 1 cut(s) 906
StyD4I CCNGG 1 cut(s) 736
StyI CCWWGG 3 cut(s) 230, 391, 670
TaaI ACNGT 3 cut(s) 169, 767, 931
TaiI ACGT 3 cut(s) 1018, 1161, 1227
TaqI TCGA 2 cut(s) 355, 1155
TasI AATT 2 cut(s) 447, 835
TatI WGTACW 1 cut(s) 792
TfiI GAWTC 6 cut(s) 352, 697, 780, 1000, 1266, 1311
Tru1I TTAA 8 cut(s) 219, 414, 422, 518, 659, 911, 1287, 1304
Tru9I TTAA 8 cut(s) 219, 414, 422, 518, 659, 911, 1287, 1304
TscAI CASTG 2 cut(s) 736, 1053
TseFI GTSAC 3 cut(s) 241, 725, 1105
Tsp45I GTSAC 3 cut(s) 241, 725, 1105
TspDTI ATGAA 4 cut(s) 395, 563, 1250, 1289
TspRI CASTG 2 cut(s) 736, 1053
Van91I CCANNNNNTGG 1 cut(s) 848
Vha464I CTTAAG 1 cut(s) 910
VpaK11BI GGWCC 1 cut(s) 734
VspI ATTAAT 1 cut(s) 219
XceI RCATGY 3 cut(s) 939, 1102, 1211
XmiI GTMKAC 1 cut(s) 1155
XspI CTAG 3 cut(s) 248, 776, 941
Zsp2I ATGCAT 1 cut(s) 1068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.