Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003628

Physical Location & Seq

Genomic Coordinates Reverse (-)

59746953 .. 59751624

Gene Structure 4672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGTTGAGAAAGCAGTTGTCGAGTCTGCATTGGATAAGCATGTGAGAGAGACTGTTGAAGAGACTTTGGAAGACAATGCTATACCTAAGGAGCTAGAGCTTCAGGATGAAGTAGAATTTGTGGATTTGGCATTGCTTTCCGCTTCAAAAAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTGAAAATGATGAAGTTGGTTCTTTTGCCTGGAGAGATGCTGATTTGCCAACTGCTGAATCTATATCCGACATCTTTCCACATTGCCCACAACTAGCTTTGACTGAGCTTTTGAAGCGAAATGTAGTGCAACTCACTATATGCTACTGCAGCAAGCAGACAAACCATGATATAATCTTAGTCTGCTTGCTGGTATCCATTCTACTGTCTTTGGCAGATATAGTAGTTTTCAAGGCACCTCCAATCTTGCAGCAGGTATGTGATGGGAAATTGTTGGTGAATGATGAAATAGGATATTTAGTAGCTGCCTTGTGCGAGATTTGGCTAAAGGGTGATGGTACTGTTAGTTCAGGATCATCTATGCTCAGGAAGTATAAACTTCAGTTATATGCATATAAACAAGGCTCTCTACACATTCAGTGGAACATGTGTATGGCAGCTGGTTCTGCCGGCATTATCTTTGCTGGAATTTACATAATGGTTGATGTTTGTGGCTACCGGCATCCAACTATTGTGTTGGTGGATGGGGAAGCATGCACTGGCAATTTTTGTTCTGTAACTTGCAATCTCTTGCCGGTTATTCTCCATGGATTCTACTGGGGCAAACCTCAGAATAACATTCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

271

Amino Acids

29.82

Weight (kDa)

4.77

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900
fragaria_vesca	FvH4_4g22060 FvH4_4g22060 FvH4_4g22060 FvH4_4g22060
malus_domestica	MD13G1134700.v1.1 MD16G1130600.v1.1
prunus_persica	Prupe.1G210600_v2.0.a1
pyrus_communis	pycom13g11760 pycom16g11500
rosa_chinensis	RchiOBHm_Chr4g0428311 RchiOBHm_Chr6g0248311
rosa_laevigata	RLG00000007166 RLG00000030335
rosa_multiflora	Rmu_sc0007019.1_g000004
rosa_roxburghii	Rroxscaffold_4G00328850 Rroxscaffold_5G00369960
rosa_rugosa	Rorug04G0224500 Rorug04G0224600
rosa_samantha	Rh1DG102600 Rh4AG281200 Rh4BG286800 Rh4CG302400 Rh4DG283900
rosa_wichuraiana	Rw4G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	544
AcsI	RAATTY	2 cut(s)	116, 651
AcuI	CTGAAG	2 cut(s)	86, 548
AfaI	GTAC	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	5 cut(s)	59, 147, 188, 298, 415
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	7 cut(s)	94, 100, 184, 281, 292, 488, 623
AluI	AGCT	7 cut(s)	94, 100, 184, 281, 292, 488, 623
Alw26I	GTCTC	2 cut(s)	44, 56
AlwI	GGATC	1 cut(s)	544
ApeKI	GCWGC	5 cut(s)	181, 333, 433, 488, 620
ApoI	RAATTY	2 cut(s)	116, 651
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AsuHPI	GGTGA	3 cut(s)	472, 527, 799
AxyI	CCTNAGG	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	193, 345, 445, 475, 632
BccI	CCATC	3 cut(s)	440, 512, 701
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	44, 56
BfaI	CTAG	2 cut(s)	95, 278
BfmI	CTRYAG	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	5 cut(s)	182, 334, 434, 489, 621
BlsI	GCNGC	5 cut(s)	183, 335, 435, 490, 622
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	214
BmrI	ACTGGG	1 cut(s)	790
BmsI	GCATC	2 cut(s)	211, 694
BmuI	ACTGGG	1 cut(s)	790
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	235
Bpu10I	CCTNAGC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	769
Bse118I	RCCGGY	3 cut(s)	632, 681, 757
Bse1I	ACTGG	2 cut(s)	727, 785
Bse21I	CCTNAGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	131, 265
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	769
BseGI	GGATG	3 cut(s)	112, 685, 712
BseMI	GCAATG	2 cut(s)	131, 265
BseMII	CTCAG	3 cut(s)	279, 562, 806
BseNI	ACTGG	2 cut(s)	727, 785
BseXI	GCAGC	5 cut(s)	193, 345, 445, 475, 632
BshNI	GGYRCC	1 cut(s)	418
BsiSI	CCGG	3 cut(s)	633, 682, 758
BsmAI	GTCTC	2 cut(s)	44, 56
Bsp143I	GATC	1 cut(s)	536
Bsp19I	CCATGG	1 cut(s)	769
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	3 cut(s)	280, 561, 805
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	418
BsrDI	GCAATG	2 cut(s)	131, 265
BsrFI	RCCGGY	3 cut(s)	632, 681, 757
BsrI	ACTGG	2 cut(s)	727, 785
BssAI	RCCGGY	3 cut(s)	632, 681, 757
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	1 cut(s)	536
BssNAI	GTATAC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	769
Bst1107I	GTATAC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	3 cut(s)	55, 390, 526
Bst6I	CTCTTC	1 cut(s)	54
BstC8I	GCNNGC	4 cut(s)	338, 371, 634, 718
BstDEI	CTNAG	5 cut(s)	87, 288, 361, 548, 792
BstDSI	CCRYGG	1 cut(s)	769
BstF5I	GGATG	3 cut(s)	112, 685, 712
BstKTI	GATC	1 cut(s)	539
BstMAI	GTCTC	2 cut(s)	44, 56
BstMBI	GATC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 298, 333, 629
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	3 cut(s)	44, 613, 720
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	331
BstV1I	GCAGC	5 cut(s)	193, 345, 445, 475, 632
BstV2I	GAAGAC	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	769
BtsCI	GGATG	3 cut(s)	112, 685, 712
BtsIMutI	CAGTG	2 cut(s)	608, 720
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	4 cut(s)	338, 371, 634, 718
Cfr10I	RCCGGY	3 cut(s)	632, 681, 757
Csp6I	GTAC	1 cut(s)	522
CviAII	CATG	5 cut(s)	41, 350, 610, 717, 770
CviQI	GTAC	1 cut(s)	522
DdeI	CTNAG	5 cut(s)	87, 288, 361, 548, 792
DpnI	GATC	1 cut(s)	538
DpnII	GATC	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	769
Eco57I	CTGAAG	2 cut(s)	86, 548
Eco81I	CCTNAGG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	769
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	769
FaeI	CATG	5 cut(s)	44, 353, 613, 720, 773
FatI	CATG	5 cut(s)	40, 349, 609, 716, 769
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	182, 334, 434, 489, 621
FokI	GGATG	3 cut(s)	119, 672, 719
Fsp4HI	GCNGC	5 cut(s)	182, 334, 434, 489, 621
FspBI	CTAG	2 cut(s)	95, 278
GluI	GCNGC	5 cut(s)	182, 334, 434, 489, 621
GsuI	CTGGAG	1 cut(s)	235
HapII	CCGG	3 cut(s)	633, 682, 758
Hin1II	CATG	5 cut(s)	44, 353, 613, 720, 773
HinfI	GANTC	4 cut(s)	23, 157, 242, 774
HpaII	CCGG	3 cut(s)	633, 682, 758
HphI	GGTGA	3 cut(s)	472, 527, 799
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	253, 795
Hpy188III	TCNNGA	3 cut(s)	104, 534, 550
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	3 cut(s)	55, 390, 526
HpyCH4V	TGCA	8 cut(s)	29, 172, 313, 333, 433, 575, 720, 747
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 298, 333, 629
HpyF3I	CTNAG	5 cut(s)	87, 288, 361, 548, 792
Hsp92II	CATG	5 cut(s)	44, 353, 613, 720, 773
KroI	GCCGGC	1 cut(s)	632
KroNI	GCCGGC	1 cut(s)	634
Kzo9I	GATC	1 cut(s)	536
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	5 cut(s)	193, 345, 445, 475, 632
LweI	GCATC	2 cut(s)	211, 694
MaeI	CTAG	2 cut(s)	95, 278
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	1 cut(s)	538
MboI	GATC	1 cut(s)	536
MboII	GAAGA	2 cut(s)	71, 83
MluCI	AATT	4 cut(s)	116, 452, 651, 727
MlyI	GAGTC	2 cut(s)	32, 166
MmeI	TCCRAC	2 cut(s)	276, 713
MnlI	CCTC	2 cut(s)	432, 801
Mph1103I	ATGCAT	1 cut(s)	577
MroNI	GCCGGC	1 cut(s)	632
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	633, 682, 758
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	4 cut(s)	178, 298, 333, 629
NaeI	GCCGGC	1 cut(s)	634
NcoI	CCATGG	1 cut(s)	769
NdeII	GATC	1 cut(s)	536
NgoMIV	GCCGGC	1 cut(s)	632
NlaIII	CATG	5 cut(s)	44, 353, 613, 720, 773
NlaIV	GGNNCC	1 cut(s)	420
NmeAIII	GCCGAG	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	3 cut(s)	44, 613, 720
PaeI	GCATGC	1 cut(s)	720
PciI	ACATGT	1 cut(s)	609
PdiI	GCCGGC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	242, 774
PkrI	GCNGC	5 cut(s)	183, 335, 435, 490, 622
PleI	GAGTC	2 cut(s)	31, 165
PpsI	GAGTC	2 cut(s)	31, 165
PscI	ACATGT	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	420
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
PstI	CTGCAG	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	523
RsaNI	GTAC	1 cut(s)	522
RseI	CAYNNNNRTG	1 cut(s)	614
SatI	GCNGC	5 cut(s)	182, 334, 434, 489, 621
Sau3AI	GATC	1 cut(s)	536
SchI	GAGTC	2 cut(s)	32, 166
ScrFI	CCNGG	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	211, 694
SfcI	CTRYAG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	720
Sse9I	AATT	4 cut(s)	116, 452, 651, 727
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	2 cut(s)	95, 278
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	1 cut(s)	769
TaaI	ACNGT	3 cut(s)	55, 390, 526
TaqI	TCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	116, 452, 651, 727
TfiI	GAWTC	2 cut(s)	242, 774
TscAI	CASTG	2 cut(s)	608, 727
TseI	GCWGC	5 cut(s)	181, 333, 433, 488, 620
TspDTI	ATGAA	3 cut(s)	123, 210, 483
TspRI	CASTG	2 cut(s)	608, 727
XapI	RAATTY	2 cut(s)	116, 651
XceI	RCATGY	3 cut(s)	44, 613, 720
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	95, 278
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.