Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003628

Physical Location & Seq

Genomic Coordinates Reverse (-)

61964260 .. 61969784

Gene Structure 5525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGTCATGTGACAAGAATCGTTCGTTGTGATGCATCACCCTCTATTGAATCGGTTGATACATGGCGAAGTGTAACGTTGCATTCGTTTACTCGTTCGTTGGCGCATCGCGTAACATTCACTCGTTCGGACATTGGCGTATCGCGTAACATTCATTCGTTCGGACGTTGGCGGTTCGCGAGGGGACGACACTTTCTTTGTGTCAACGAGACCGCCGAGAGCGATATCGCATTAACATTCATTCATTCATGGTTGGTGTATCGCCTTGTCTCCCACGAGAGAATTGCAATAGGATTTTTAGTAGCTGCCTTGTGCGAGATTTGGCTAAAGGGTGACGGTACTGTTAGTTCGGGATCATCTTTGCTCGGGAAGTATAAACTTCGGTTGTATTGGATGTTACCGCAGGTTGATGTTTGTGGCTACCGGCATCCAACTATTGTGTTGGAGTGGATGGGAAAGCATGCACTAGCAATTTTTGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

161

Amino Acids

18.42

Weight (kDa)

9.54

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900
fragaria_vesca	FvH4_4g22060 FvH4_4g22060 FvH4_4g22060 FvH4_4g22060
malus_domestica	MD13G1134700.v1.1 MD16G1130600.v1.1
prunus_persica	Prupe.1G210600_v2.0.a1
pyrus_communis	pycom13g11760 pycom16g11500
rosa_chinensis	RchiOBHm_Chr4g0428311 RchiOBHm_Chr6g0248311
rosa_laevigata	RLG00000007166 RLG00000030335
rosa_multiflora	Rmu_sc0007019.1_g000004
rosa_roxburghii	Rroxscaffold_4G00328850 Rroxscaffold_5G00369960
rosa_rugosa	Rorug04G0224500 Rorug04G0224600
rosa_samantha	Rh1DG102600 Rh4AG281200 Rh4BG286800 Rh4CG302400 Rh4DG283900
rosa_wichuraiana	Rw4G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccII	CGCG	3 cut(s)	111, 145, 179
AciI	CCGC	3 cut(s)	172, 213, 401
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	203, 274
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	180, 212
AspLEI	GCGC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	30, 344
AvaI	CYCGRG	1 cut(s)	365
BauI	CACGAG	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	445
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BcoDI	GTCTC	2 cut(s)	203, 274
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	365
BmsI	GCATC	4 cut(s)	22, 44, 115, 436
BsaI	GGTCTC	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	423
BseGI	GGATG	3 cut(s)	399, 427, 456
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	3 cut(s)	111, 145, 179
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	203, 274
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	353
Bsp68I	TCGCGA	1 cut(s)	179
BspACI	CCGC	3 cut(s)	172, 213, 401
BspFNI	CGCG	3 cut(s)	111, 145, 179
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	423
BssMI	GATC	1 cut(s)	353
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	338, 343
BstC8I	GCNNGC	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	399, 427, 456
BstFNI	CGCG	3 cut(s)	111, 145, 179
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	356
BstMAI	GTCTC	2 cut(s)	203, 274
BstMBI	GATC	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	482
BstUI	CGCG	3 cut(s)	111, 145, 179
BstV1I	GCAGC	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	399, 427, 456
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	423
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	4 cut(s)	8, 63, 249, 461
CviJI	RGCY	3 cut(s)	305, 325, 420
CviKI_1	RGCY	3 cut(s)	305, 325, 420
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	1 cut(s)	355
DpnII	GATC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	365
EcoRV	GATATC	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	37
FaeI	CATG	4 cut(s)	11, 66, 252, 464
FaiI	YATR	5 cut(s)	9, 64, 250, 375, 462
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	4 cut(s)	7, 62, 248, 460
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	3 cut(s)	406, 414, 463
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	306
HapII	CCGG	1 cut(s)	424
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	11, 66, 252, 464
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	18, 50
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	2 cut(s)	30, 344
Hpy166II	GTNNAC	2 cut(s)	90, 205
Hpy188I	TCNGA	2 cut(s)	130, 164
Hpy188III	TCNNGA	3 cut(s)	178, 351, 367
Hpy8I	GTNNAC	2 cut(s)	90, 205
HpyCH4III	ACNGT	2 cut(s)	338, 343
HpyCH4IV	ACGT	2 cut(s)	77, 166
HpyCH4V	TGCA	4 cut(s)	35, 82, 287, 464
HpySE526I	ACGT	2 cut(s)	77, 166
Hsp92II	CATG	4 cut(s)	11, 66, 252, 464
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	353
LpnPI	CCDG	2 cut(s)	389, 437
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	4 cut(s)	22, 44, 115, 436
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	77, 166
MaeIII	GTNAC	6 cut(s)	10, 73, 112, 146, 332, 396
MalI	GATC	1 cut(s)	355
MboI	GATC	1 cut(s)	353
MluCI	AATT	2 cut(s)	282, 471
MmeI	TCCRAC	2 cut(s)	423, 455
MnlI	CCTC	2 cut(s)	52, 174
Mph1103I	ATGCAT	1 cut(s)	37
MseI	TTAA	1 cut(s)	233
MspI	CCGG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	82
MvnI	CGCG	3 cut(s)	111, 145, 179
NdeII	GATC	1 cut(s)	353
NlaIII	CATG	4 cut(s)	11, 66, 252, 464
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	10, 332
NruI	TCGCGA	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	37
NspI	RCATGY	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 213
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	18, 50
PkrI	GCNGC	1 cut(s)	307
Psp1406I	AACGTT	1 cut(s)	77
PsrI	GAACNNNNNNTAC	2 cut(s)	331, 363
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	353
SetI	ASST	4 cut(s)	80, 169, 307, 408
SfaNI	GCATC	4 cut(s)	22, 44, 115, 436
SfcI	CTRYAG	1 cut(s)	482
SphI	GCATGC	1 cut(s)	464
Sse9I	AATT	2 cut(s)	282, 471
SsiI	CCGC	3 cut(s)	172, 213, 401
SspMI	CTAG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	338, 343
TaiI	ACGT	2 cut(s)	80, 169
TasI	AATT	2 cut(s)	282, 471
TfiI	GAWTC	2 cut(s)	18, 50
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	10, 332
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	2 cut(s)	10, 332
TspDTI	ATGAA	4 cut(s)	143, 229, 233, 237
XceI	RCATGY	1 cut(s)	464
XspI	CTAG	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.