Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003628

Physical Location & Seq

Genomic Coordinates Forward (+)

19174155 .. 19182010

Gene Structure 7856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG102600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTTGGCTGGCCTAATACCTGTATAGCTTTCAACAAGGATTCTCGATTGTCTCAAGGGATTGTGGTTCAAACTCTGACTAACCGCAAAGAGAAGTTCTGTAAATTGCTTGAATCATATAAGCCGAGTCTTGTATACTTGCAAGGAGAGCAGCTTCAAAATGATGAAGTTGGTTCTTTTGCCTGGAGAGATGCTGATTTGCCAACTGCTGAATCTATATCGACATCTTTCCACATTGCCTACAACTATATAGTAATTTTCAAGGCACCTCTAATCTTGCAGGAAATTGGCATTAGCTCGGGCGATGTATTTATAAAAAAAATTGTGGTCAAGGCTGCAGATTATGTTGAGGTACATGATGGGAAATTGTTGGTGAATGATGAAATAGGATATTTAGTAGCTGCCTTGTGCGAGATTTGGCTAAAGGGTGATGGTACTGTTAGTTCAGGATCATCTCTGCTCAGGAAGTATAAACTTCAGTTATATGCATATAAACAAGGCTCTCTACACATTCAGTGGAACATGTATATGGCAGCTAGTTCTGCCGGCATTATCTTTGCTGGAATTTACATAATGGTTGATGTTTGTGGCTACCGGCATCCAACTATTGTATTGGAGTGGATGGGGAAGCATGCACTGGCAATTTTTGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

218

Amino Acids

24.38

Weight (kDa)

6.95

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900
fragaria_vesca	FvH4_4g22060 FvH4_4g22060 FvH4_4g22060 FvH4_4g22060
malus_domestica	MD13G1134700.v1.1 MD16G1130600.v1.1
prunus_persica	Prupe.1G210600_v2.0.a1
pyrus_communis	pycom13g11760 pycom16g11500
rosa_chinensis	RchiOBHm_Chr4g0428311 RchiOBHm_Chr6g0248311
rosa_laevigata	RLG00000007166 RLG00000030335
rosa_multiflora	Rmu_sc0007019.1_g000004
rosa_roxburghii	Rroxscaffold_4G00328850 Rroxscaffold_5G00369960
rosa_rugosa	Rorug04G0224500 Rorug04G0224600
rosa_samantha	Rh1DG102600 Rh4AG281200 Rh4BG286800 Rh4CG302400 Rh4DG283900
rosa_wichuraiana	Rw4G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	354, 436
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	5 cut(s)	34, 71, 113, 158, 262
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	29, 154, 297, 401, 536
AluI	AGCT	5 cut(s)	29, 154, 297, 401, 536
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	457
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	4 cut(s)	151, 335, 401, 533
ApoI	RAATTY	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	385, 440
AvaI	CYCGRG	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	163, 322, 388, 545
BccI	CCATC	3 cut(s)	353, 425, 616
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	537
BfmI	CTRYAG	2 cut(s)	336, 653
BisI	GCNGC	4 cut(s)	152, 336, 402, 534
BlsI	GCNGC	4 cut(s)	153, 337, 403, 535
Bme1390I	CCNGG	1 cut(s)	184
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	181, 607
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	39
Bse118I	RCCGGY	2 cut(s)	545, 594
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	184
BseGI	GGATG	2 cut(s)	598, 627
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	1 cut(s)	642
BseXI	GCAGC	4 cut(s)	163, 322, 388, 545
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	546, 595
BsmAI	GTCTC	1 cut(s)	57
BsnI	GGCC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	449
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	1 cut(s)	457
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	545, 594
BsrI	ACTGG	1 cut(s)	642
BssAI	RCCGGY	2 cut(s)	545, 594
BssMI	GATC	1 cut(s)	449
BssNAI	GTATAC	1 cut(s)	136
Bst1107I	GTATAC	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	439
BstC8I	GCNNGC	3 cut(s)	11, 547, 633
BstDEI	CTNAG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	598, 627
BstKTI	GATC	1 cut(s)	452
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 542
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	2 cut(s)	526, 635
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	336, 653
BstV1I	GCAGC	4 cut(s)	163, 322, 388, 545
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	598, 627
BtsIMutI	CAGTG	2 cut(s)	521, 635
Cac8I	GCNNGC	3 cut(s)	11, 547, 633
Cfr10I	RCCGGY	2 cut(s)	545, 594
Csp6I	GTAC	2 cut(s)	353, 435
CviAII	CATG	3 cut(s)	356, 523, 632
CviQI	GTAC	2 cut(s)	353, 435
DdeI	CTNAG	1 cut(s)	461
DpnI	GATC	1 cut(s)	451
DpnII	GATC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	490
FaeI	CATG	3 cut(s)	359, 526, 635
FatI	CATG	3 cut(s)	355, 522, 631
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	152, 336, 402, 534
FokI	GGATG	2 cut(s)	585, 634
Fsp4HI	GCNGC	4 cut(s)	152, 336, 402, 534
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	4 cut(s)	152, 336, 402, 534
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	2 cut(s)	546, 595
Hin1II	CATG	3 cut(s)	359, 526, 635
HinfI	GANTC	4 cut(s)	41, 113, 127, 212
HpaII	CCGG	2 cut(s)	546, 595
HphI	GGTGA	2 cut(s)	385, 440
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	3 cut(s)	45, 447, 463
Hpy8I	GTNNAC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	142, 280, 338, 488, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 542
HpyF3I	CTNAG	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	359, 526, 635
KroI	GCCGGC	1 cut(s)	545
KroNI	GCCGGC	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	449
Lsp1109I	GCAGC	4 cut(s)	163, 322, 388, 545
LweI	GCATC	2 cut(s)	181, 607
MaeI	CTAG	1 cut(s)	537
MalI	GATC	1 cut(s)	451
MboI	GATC	1 cut(s)	449
MluCI	AATT	7 cut(s)	104, 255, 285, 321, 365, 564, 642
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	2 cut(s)	279, 343
Mph1103I	ATGCAT	1 cut(s)	490
MroNI	GCCGGC	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	2 cut(s)	546, 595
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	148, 542
NaeI	GCCGGC	1 cut(s)	547
NdeII	GATC	1 cut(s)	449
NgoMIV	GCCGGC	1 cut(s)	545
NlaIII	CATG	3 cut(s)	359, 526, 635
NlaIV	GGNNCC	1 cut(s)	267
NmeAIII	GCCGAG	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	2 cut(s)	526, 635
PaeI	GCATGC	1 cut(s)	635
PciI	ACATGT	1 cut(s)	522
PdiI	GCCGGC	1 cut(s)	547
PfeI	GAWTC	3 cut(s)	41, 113, 212
PkrI	GCNGC	4 cut(s)	153, 337, 403, 535
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
PstI	CTGCAG	1 cut(s)	340
RsaI	GTAC	2 cut(s)	354, 436
RsaNI	GTAC	2 cut(s)	353, 435
RseI	CAYNNNNRTG	1 cut(s)	527
SatI	GCNGC	4 cut(s)	152, 336, 402, 534
Sau3AI	GATC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	8 cut(s)	23, 31, 156, 271, 299, 354, 403, 538
SfaNI	GCATC	2 cut(s)	181, 607
SfcI	CTRYAG	2 cut(s)	336, 653
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	7 cut(s)	104, 255, 285, 321, 365, 564, 642
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	537
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	46, 221
TasI	AATT	7 cut(s)	104, 255, 285, 321, 365, 564, 642
TfiI	GAWTC	3 cut(s)	41, 113, 212
TscAI	CASTG	2 cut(s)	521, 642
TseI	GCWGC	4 cut(s)	151, 335, 401, 533
TspDTI	ATGAA	2 cut(s)	180, 396
TspRI	CASTG	2 cut(s)	521, 642
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	2 cut(s)	526, 635
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.