Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003628

Physical Location & Seq

Genomic Coordinates Reverse (-)

4360244 .. 4361270

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22257

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCTATCATTCATGAAAATATTTGTGTACATAAATTGTCATGCAGGGCCATTGCAACTAAAAAAGCATTATTGAGGGGGTTGAAGCTTCTAGCATTAGGCCTGTTTCTTCAGGGTGGATTTTTCCATGGCATCAAGGAACTAACTTTCGGGGTTGATATTGCAAAGATGAGATGGATGGGCATTCTACAGGGTGATGGTACTGTTAGTTCAGGATCATCTCTGCTCAGGAAGTATAAACTTCAGTTATATGCATATAAACAAGGCTCTCTACACATTCAGTGGAACATGTGTATGGCAGCTGGTTCTGCCGGCATTATCTTTACTGGAATTTACATAATGGTTGATGTTTGTGGCTACTGGCATCCAACTATTGTGTTGGAGTGGATGGGGAAGCATGCACTGGCAATTTTTATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

140

Amino Acids

15.56

Weight (kDa)

9.54

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900
fragaria_vesca	FvH4_4g22060 FvH4_4g22060 FvH4_4g22060 FvH4_4g22060
malus_domestica	MD13G1134700.v1.1 MD16G1130600.v1.1
prunus_persica	Prupe.1G210600_v2.0.a1
pyrus_communis	pycom13g11760 pycom16g11500
rosa_chinensis	RchiOBHm_Chr4g0428311 RchiOBHm_Chr6g0248311
rosa_laevigata	RLG00000007166 RLG00000030335
rosa_multiflora	Rmu_sc0007019.1_g000004
rosa_roxburghii	Rroxscaffold_4G00328850 Rroxscaffold_5G00369960
rosa_rugosa	Rorug04G0224500 Rorug04G0224600
rosa_samantha	Rh1DG102600 Rh4AG281200 Rh4BG286800 Rh4CG302400 Rh4DG283900
rosa_wichuraiana	Rw4G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	2 cut(s)	95, 227
AfaI	GTAC	2 cut(s)	30, 202
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	2 cut(s)	88, 302
AluI	AGCT	2 cut(s)	88, 302
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	2 cut(s)	48, 100
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	4 cut(s)	168, 172, 191, 382
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	2 cut(s)	188, 419
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	48
BmsI	GCATC	2 cut(s)	141, 373
Bpu10I	CCTNAGC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	331, 365, 408
Bse3DI	GCAATG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	3 cut(s)	183, 364, 393
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	3 cut(s)	331, 365, 408
BseXI	GCAGC	1 cut(s)	311
BshFI	GGCC	2 cut(s)	50, 102
BsiSI	CCGG	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	50, 102
Bsp1407I	TGTACA	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	2 cut(s)	50, 102
BspCNI	CTCAG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	13
BspPI	GGATC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	331, 365, 408
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	313, 399
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	183, 364, 393
BstKTI	GATC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	292, 401
BstSFI	CTRYAG	2 cut(s)	188, 419
BstV1I	GCAGC	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	50, 102
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	3 cut(s)	183, 364, 393
BtsIMutI	CAGTG	2 cut(s)	287, 401
Cac8I	GCNNGC	2 cut(s)	313, 399
CciI	TCATGA	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	29, 201
CviAII	CATG	5 cut(s)	14, 42, 128, 289, 398
CviJI	RGCY	6 cut(s)	50, 88, 102, 267, 302, 357
CviKI_1	RGCY	6 cut(s)	50, 88, 102, 267, 302, 357
CviQI	GTAC	2 cut(s)	29, 201
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	102
Eco57I	CTGAAG	2 cut(s)	95, 227
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	5 cut(s)	17, 45, 131, 292, 401
FatI	CATG	5 cut(s)	13, 41, 127, 288, 397
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	3 cut(s)	190, 351, 400
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	50, 102
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	5 cut(s)	17, 45, 131, 292, 401
HindIII	AAGCTT	1 cut(s)	86
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188III	TCNNGA	3 cut(s)	14, 213, 229
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	5 cut(s)	45, 56, 164, 254, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	5 cut(s)	17, 45, 131, 292, 401
KroI	GCCGGC	1 cut(s)	311
KroNI	GCCGGC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	2 cut(s)	141, 373
MaeI	CTAG	1 cut(s)	92
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	1 cut(s)	101
MluCI	AATT	3 cut(s)	35, 330, 408
MmeI	TCCRAC	2 cut(s)	360, 392
MnlI	CCTC	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	256
MroNI	GCCGGC	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	308
NaeI	GCCGGC	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	215
NgoMIV	GCCGGC	1 cut(s)	311
NlaIII	CATG	5 cut(s)	17, 45, 131, 292, 401
NsiI	ATGCAT	1 cut(s)	256
NspI	RCATGY	2 cut(s)	292, 401
PaeI	GCATGC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	102
PciI	ACATGT	1 cut(s)	288
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	301
PscI	ACATGT	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	48
PsrI	GAACNNNNNNTAC	2 cut(s)	193, 225
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	30, 202
RsaNI	GTAC	2 cut(s)	29, 201
RseI	CAYNNNNRTG	1 cut(s)	293
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	1 cut(s)	215
Sau96I	GGNCC	1 cut(s)	48
SetI	ASST	2 cut(s)	90, 304
SfaNI	GCATC	2 cut(s)	141, 373
SfcI	CTRYAG	2 cut(s)	188, 419
SmiMI	CAYNNNNRTG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	3 cut(s)	35, 330, 408
SseBI	AGGCCT	1 cut(s)	102
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	92
StuI	AGGCCT	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	3 cut(s)	35, 330, 408
TatI	WGTACW	1 cut(s)	28
TscAI	CASTG	2 cut(s)	287, 408
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	287, 408
XapI	RAATTY	1 cut(s)	330
XceI	RCATGY	2 cut(s)	292, 401
XspI	CTAG	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.