Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003628

Physical Location & Seq

Genomic Coordinates Forward (+)

56301140 .. 56306564

Gene Structure 5425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATTCAGCTGATGATACTGGTGGACGAAGTTGGTGGACTTGTGCCTGCTATCAACCATGCACCCTGGAATGGTTTGACACTTGCAGATTTAGTCATGCCATTCTTCCTCTTTATGGTTGGTGTTTCACTTTCCCTTGTCTACAAGAAATTATCATGCAGGGCCATTGCAACTAAAAAAGCATTAATAAGGGGGTTGAAGCTTCTAGCATTAGGCCTGTTTCTTCAAGGTGGATTTTTCCACGGCATCAAGGAACTAACTTTCGGGGTCGATATTGCAAAGATGAGATGGATGGGCATTCTCCAGAGAATTGCAATAGGATATTTAGTAGCTGCATTGTGCGAGATTTGGCTAAAGGGTGATGGTACTGTTAGTTCAGGATCATCTCTGCTCAAGAAGTATAAACTTCAGTTGGTTATGGCACTGATGATAACTGTGACATATCTAGTATTGTTATACGGCTTGCATGTTCCTGATTGGGAGTACCAAATTTCTACTGGACCCTCCTCTGCACCAAAAACATTTTCGGTGAAATGTGGAGTGAGGGGTGACACAGGACCGGCATGTAATGCTGTTGGGATGATTGATCGCAAGTTATTGGGTCTTAAGCATTTATATAGAAGACCAATCTATTCAAGAACAGTGCAATGCAGTATTAACTCCCCGGATTATGGGCCATTACCTGCTGATGCTCCTTCTTGGTGCCAAGCCCCTTTTGATCCTGAAGGACTTTTAAGTTCATTGATGGCCATTGTTACCTGCTTAGTTGGTTTGCACTATGGTCACATCATTAACCATTTTAAAGATCACCGGAACAGAGTTCTGCACTGGACTATCTCATCCACGTCTCTCGTAGTCTTAGGCCTTACCTTGGACTTATTTGGTGAGGGACTTGTTCACAATTTTCTTGTATATAGTAGCAACCGTCGAAGTTGCTGTGTTTTGTTTGTCTCTAAACTATCTGCTTCCATCTTTTCAGGTATGCATATAAACAAGGCTCTCTACACATTCAGTTACATGTGTATGACAGCTGGTTCTGCTGGCATTATCTTTGCTGGGATTTACTTGATGGTAGGAATCTTTCTAATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

364

Amino Acids

39.94

Weight (kDa)

9.3

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900 AT5G47900
fragaria_vesca	FvH4_4g22060 FvH4_4g22060 FvH4_4g22060 FvH4_4g22060
malus_domestica	MD13G1134700.v1.1 MD16G1130600.v1.1
prunus_persica	Prupe.1G210600_v2.0.a1
pyrus_communis	pycom13g11760 pycom16g11500
rosa_chinensis	RchiOBHm_Chr4g0428311 RchiOBHm_Chr6g0248311
rosa_laevigata	RLG00000007166 RLG00000030335
rosa_multiflora	Rmu_sc0007019.1_g000004
rosa_roxburghii	Rroxscaffold_4G00328850 Rroxscaffold_5G00369960
rosa_rugosa	Rorug04G0224500 Rorug04G0224600
rosa_samantha	Rh1DG102600 Rh4AG281200 Rh4BG286800 Rh4CG302400 Rh4DG283900
rosa_wichuraiana	Rw4G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	691, 767
AccB1I	GGYRCC	1 cut(s)	702
AccI	GTMKAC	1 cut(s)	141
AclWI	GGATC	2 cut(s)	388, 713
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	2 cut(s)	392, 744
AfaI	GTAC	2 cut(s)	367, 485
AfiI	CCNNNNNNNGG	4 cut(s)	71, 115, 671, 871
AflII	CTTAAG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	3 cut(s)	199, 227, 636
AjiI	CACGTC	1 cut(s)	846
AjnI	CCWGG	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AluBI	AGCT	4 cut(s)	10, 202, 332, 1031
AluI	AGCT	4 cut(s)	10, 202, 332, 1031
Alw26I	GTCTC	2 cut(s)	852, 955
AlwI	GGATC	2 cut(s)	388, 713
AoxI	GGCC	5 cut(s)	162, 214, 674, 747, 862
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	489
AseI	ATTAAT	1 cut(s)	185
AspS9I	GGNCC	4 cut(s)	162, 500, 557, 674
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	5 cut(s)	371, 541, 560, 800, 896
AvaII	GGWCC	2 cut(s)	500, 557
BalI	TGGCCA	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	6 cut(s)	282, 286, 356, 739, 977, 1063
BceAI	ACGGC	2 cut(s)	259, 475
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	2 cut(s)	852, 955
BfaI	CTAG	2 cut(s)	206, 446
BfrI	CTTAAG	1 cut(s)	605
BfuAI	ACCTGC	2 cut(s)	691, 767
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	67, 665
Bme18I	GGWCC	2 cut(s)	500, 557
BmgBI	CACGTC	1 cut(s)	846
BmgT120I	GGNCC	4 cut(s)	162, 500, 557, 674
BmiI	GGNNCC	2 cut(s)	502, 704
BmrFI	CCNGG	2 cut(s)	67, 665
BmsI	GCATC	2 cut(s)	255, 679
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	665
BsaJI	CCNNGG	4 cut(s)	65, 241, 663, 870
BsaWI	WCCGGW	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 115, 671, 871
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	3 cut(s)	24, 502, 833
Bse3DI	GCAATG	2 cut(s)	165, 653
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	65, 241, 663, 870
BseGI	GGATG	3 cut(s)	297, 585, 839
BseLI	CCNNNNNNNGG	4 cut(s)	71, 115, 671, 871
BseMI	GCAATG	2 cut(s)	165, 653
BseNI	ACTGG	3 cut(s)	24, 502, 833
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	1055
BsgI	GTGCAG	2 cut(s)	495, 809
BshFI	GGCC	5 cut(s)	164, 216, 676, 749, 864
BshNI	GGYRCC	1 cut(s)	702
BsiSI	CCGG	3 cut(s)	560, 665, 811
BslFI	GGGAC	1 cut(s)	903
BslI	CCNNNNNNNGG	4 cut(s)	71, 115, 671, 871
BsmAI	GTCTC	2 cut(s)	852, 955
BsmBI	CGTCTC	1 cut(s)	852
BsmFI	GGGAC	1 cut(s)	903
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	5 cut(s)	164, 216, 676, 749, 864
Bsp143I	GATC	4 cut(s)	380, 586, 718, 805
BspANI	GGCC	5 cut(s)	164, 216, 676, 749, 864
BspLI	GGNNCC	2 cut(s)	502, 704
BspMI	ACCTGC	2 cut(s)	691, 767
BspPI	GGATC	2 cut(s)	388, 713
BspT107I	GGYRCC	1 cut(s)	702
BspTI	CTTAAG	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	165, 653
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	3 cut(s)	24, 502, 833
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	4 cut(s)	65, 241, 663, 870
BssMI	GATC	4 cut(s)	380, 586, 718, 805
BssT1I	CCWWGG	1 cut(s)	870
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	370, 436, 643, 926
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	48, 464, 1042
BstDEI	CTNAG	2 cut(s)	763, 859
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	297, 585, 839
BstKTI	GATC	4 cut(s)	383, 589, 721, 808
BstMAI	GTCTC	2 cut(s)	852, 955
BstMBI	GATC	4 cut(s)	380, 586, 718, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 1037
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	3 cut(s)	470, 567, 1021
BstSCI	CCNGG	2 cut(s)	65, 663
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	628
BsuRI	GGCC	5 cut(s)	164, 216, 676, 749, 864
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	846
BtsCI	GGATG	3 cut(s)	297, 585, 839
BtsIMutI	CAGTG	3 cut(s)	422, 648, 826
BveI	ACCTGC	2 cut(s)	691, 767
Cac8I	GCNNGC	3 cut(s)	48, 464, 1042
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	4 cut(s)	162, 500, 557, 674
Csp6I	GTAC	2 cut(s)	366, 484
CviAII	CATG	7 cut(s)	59, 97, 156, 467, 564, 1018, 1090
CviQI	GTAC	2 cut(s)	366, 484
DdeI	CTNAG	2 cut(s)	763, 859
DpnI	GATC	4 cut(s)	382, 588, 720, 807
DpnII	GATC	4 cut(s)	380, 586, 718, 805
DraI	TTTAAA	1 cut(s)	802
EaeI	YGGCCR	1 cut(s)	747
Eco130I	CCWWGG	1 cut(s)	870
Eco147I	AGGCCT	2 cut(s)	216, 864
Eco47I	GGWCC	2 cut(s)	500, 557
Eco57I	CTGAAG	2 cut(s)	392, 744
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	870
EcoT22I	ATGCAT	1 cut(s)	987
ErhI	CCWWGG	1 cut(s)	870
Esp3I	CGTCTC	1 cut(s)	852
FaeI	CATG	7 cut(s)	62, 100, 159, 470, 567, 1021, 1093
FaqI	GGGAC	1 cut(s)	903
FatI	CATG	7 cut(s)	58, 96, 155, 466, 563, 1017, 1089
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	3 cut(s)	304, 592, 826
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	206, 446
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	1059
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	164, 216, 676, 749, 864
HapII	CCGG	3 cut(s)	560, 665, 811
Hin1II	CATG	7 cut(s)	62, 100, 159, 470, 567, 1021, 1093
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	2 cut(s)	4, 1077
HpaII	CCGG	3 cut(s)	560, 665, 811
HphI	GGTGA	5 cut(s)	371, 541, 560, 800, 896
Hpy166II	GTNNAC	4 cut(s)	25, 38, 142, 898
Hpy188III	TCNNGA	6 cut(s)	304, 378, 394, 473, 636, 722
Hpy8I	GTNNAC	4 cut(s)	25, 38, 142, 898
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	2 cut(s)	705, 719
HpyCH4III	ACNGT	4 cut(s)	370, 436, 643, 926
HpyCH4IV	ACGT	1 cut(s)	845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 1037
HpyF3I	CTNAG	2 cut(s)	763, 859
HpySE526I	ACGT	1 cut(s)	845
Hsp92II	CATG	7 cut(s)	62, 100, 159, 470, 567, 1021, 1093
Kzo9I	GATC	4 cut(s)	380, 586, 718, 805
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	255, 679
MaeI	CTAG	2 cut(s)	206, 446
MaeII	ACGT	1 cut(s)	845
MaeIII	GTNAC	5 cut(s)	436, 548, 754, 782, 1013
MalI	GATC	4 cut(s)	382, 588, 720, 807
MboI	GATC	4 cut(s)	380, 586, 718, 805
MboII	GAAGA	3 cut(s)	97, 215, 633
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	4 cut(s)	149, 309, 489, 901
MluNI	TGGCCA	1 cut(s)	749
MnlI	CCTC	5 cut(s)	119, 514, 517, 537, 880
Mox20I	TGGCCA	1 cut(s)	749
Mph1103I	ATGCAT	1 cut(s)	987
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	6 cut(s)	185, 606, 657, 734, 792, 801
MslI	CAYNNNNRTG	1 cut(s)	1022
Msp20I	TGGCCA	1 cut(s)	749
MspA1I	CMGCKG	2 cut(s)	10, 1031
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	3 cut(s)	560, 665, 811
MspR9I	CCNGG	2 cut(s)	67, 665
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	2 cut(s)	569, 1037
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	4 cut(s)	380, 586, 718, 805
NlaIII	CATG	7 cut(s)	62, 100, 159, 470, 567, 1021, 1093
NlaIV	GGNNCC	2 cut(s)	502, 704
NmuCI	GTSAC	3 cut(s)	436, 548, 782
NsiI	ATGCAT	1 cut(s)	987
NspI	RCATGY	3 cut(s)	470, 567, 1021
PceI	AGGCCT	2 cut(s)	216, 864
PciI	ACATGT	1 cut(s)	1017
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	4, 1077
PkrI	GCNGC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	1017
PshBI	ATTAAT	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	1055
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	502, 704
PspPI	GGNCC	4 cut(s)	162, 500, 557, 674
PsrI	GAACNNNNNNTAC	2 cut(s)	358, 390
PvuII	CAGCTG	2 cut(s)	10, 1031
RsaI	GTAC	2 cut(s)	367, 485
RsaNI	GTAC	2 cut(s)	366, 484
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	6 cut(s)	185, 606, 657, 734, 792, 801
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	380, 586, 718, 805
Sau96I	GGNCC	4 cut(s)	162, 500, 557, 674
ScrFI	CCNGG	2 cut(s)	67, 665
SfaNI	GCATC	2 cut(s)	255, 679
SinI	GGWCC	2 cut(s)	500, 557
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	2 cut(s)	392, 605
SmoI	CTYRAG	2 cut(s)	392, 605
Sse9I	AATT	4 cut(s)	149, 309, 489, 901
SseBI	AGGCCT	2 cut(s)	216, 864
SspMI	CTAG	2 cut(s)	206, 446
StuI	AGGCCT	2 cut(s)	216, 864
StyD4I	CCNGG	2 cut(s)	65, 663
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	4 cut(s)	370, 436, 643, 926
TaiI	ACGT	1 cut(s)	848
TaqI	TCGA	2 cut(s)	270, 928
TasI	AATT	4 cut(s)	149, 309, 489, 901
TfiI	GAWTC	2 cut(s)	4, 1077
Tru1I	TTAA	6 cut(s)	185, 606, 657, 734, 792, 801
Tru9I	TTAA	6 cut(s)	185, 606, 657, 734, 792, 801
TscAI	CASTG	3 cut(s)	429, 648, 833
TseFI	GTSAC	3 cut(s)	436, 548, 782
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	3 cut(s)	436, 548, 782
TspDTI	ATGAA	1 cut(s)	729
TspRI	CASTG	3 cut(s)	429, 648, 833
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	500, 557
VspI	ATTAAT	1 cut(s)	185
XapI	RAATTY	1 cut(s)	489
XceI	RCATGY	3 cut(s)	470, 567, 1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	206, 446
Zsp2I	ATGCAT	1 cut(s)	987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.