AT5G48590

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010353
Physical Location & Seq
Forward (+)
19698280 .. 19699992
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48590.1

Sequence Viewer

Length: 1035 bp
ATGGACACCTCTCTCTCCCACCACGGATCTCTCCCGTTTCCCCCATCGCGCCGCAATTTCGTTAAACAAAACCGCGGCGGCGATTGCGTTTTTCTCCCCTCGCGTCGTAAGTTCCGATACGATTCGTTGGTGGTGGTTTCCGCTGCGTCTTCGGGACAGAGCATCGACGCGCCTCTAGTTCCACGGTCGCCTCAGGGAAGGTTTCTAAGTTCCGTCTTGGTGAAAAAACGGCAGCTCTTTCATTTCGCCGTCGCTGATTTGCTTAAACAGCTCGCTGATGATAAGGAAGCTTCCTTATCTCGTATGTTCCTTAGTTATGGTTCCGATGAAGCTTCCCTCCACAGAAGGATAGCTCAACTTAAGGAGAGTGATTGCCAAATTGCAATTGAAGACATAATGTACATGTTGATCTTGTACAAATTCTCAGAGATAAGAGTGCCTCTTGTTCCAAAGCTTCCCAGTTGCATTTACAACGGAAGACTCGAGATCTCGCCTTCGAAAGACTGGGAACTTGAGTCAATCCATAGCTTTGACGTTCTTGAACTCATCAAAGAACATAGTAACGCAGTCATCAGTTTAAGAGTGAATTCGAGTTTGACTGACGATTGTGCGACAACGGAGATAGATAAGAATCGTCTCAGTAAAGTATACACAGCTTCGGTCTTATATGGATACTTTTTAAAATCTGCTTCTCTTAGACACCAACTCGAATGCTCATTATCACAACACCATGGAAGTTTCACTAAGCAACTGAGGCATTACATTTCTGAGTTCGATCCCAAGATATTGCGGAGATGCGCAAAACCAAGGTCACATGAAGCAAAAAGCCTGATAGAAAAGCAGAGTTTAGCTCTTTTTGGTCCTGAGGAAAGCAGCAAAGAGAGCATTGTGACATCGTTTTCTAGCCTGAAGAGGTTGCTTCTTGAGGCTGTGGCGTTTGGTACGTTTCTATGGGACACAGAGGAGTATGTAGATGGCGCGTTTAAGCTCAAGGAGAATGAGAATGCAGAGGAAGAAACAAATAGCAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

344

Amino Acids

38.96

Weight (kDa)

7.67

Isoelectric Point (pI)

59.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 112 - 240 9.8e-17 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07310 AT3G07310 AT5G48590
fragaria_vesca FvH4_2g18230 FvH4_2g18230 FvH4_2g18230
malus_domestica MD05G1166700.v1.1 MD10G1156700.v1.1
prunus_persica Prupe.8G195000_v2.0.a1
pyrus_communis pycom05g15550 pycom10g13490
rosa_chinensis RchiOBHm_Chr6g0283601
rosa_laevigata RLG00000012813
rosa_multiflora Rmu_co8416891.1_g000001
rosa_roxburghii Rroxscaffold_7G00185360
rosa_rugosa Rorug06G0156000
rosa_samantha Rh6AG267800 Rh6BG270300 Rh6CG270100 Rh6DG263800
rosa_wichuraiana Rw6G023200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 799
AccI GTMKAC 1 cut(s) 648
AccII CGCG 5 cut(s) 49, 75, 103, 170, 980
AciI CCGC 6 cut(s) 52, 73, 75, 78, 141, 790
AclWI GGATC 2 cut(s) 34, 770
AcsI RAATTY 2 cut(s) 419, 586
AcuI CTGAAG 1 cut(s) 929
AfaI GTAC 3 cut(s) 401, 416, 943
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 2 cut(s) 389, 542
Alw26I GTCTC 1 cut(s) 641
AlwI GGATC 2 cut(s) 34, 770
Ama87I CYCGRG 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 143, 232, 873
ApoI RAATTY 2 cut(s) 419, 586
ArsI GACNNNNNNTTYG 2 cut(s) 794, 826
AspLEI GCGC 4 cut(s) 51, 172, 800, 980
AspS9I GGNCC 1 cut(s) 860
AsuHPI GGTGA 1 cut(s) 232
AsuII TTCGAA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 482
AvaII GGWCC 1 cut(s) 860
AxyI CCTNAGG 2 cut(s) 192, 864
BbsI GAAGAC 3 cut(s) 141, 396, 484
BbvI GCAGC 3 cut(s) 130, 244, 885
BccI CCATC 2 cut(s) 52, 968
BceAI ACGGC 2 cut(s) 233, 245
BciVI GTATCC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 641
BfaI CTAG 2 cut(s) 176, 903
BfrI CTTAAG 1 cut(s) 359
BfuI GTATCC 1 cut(s) 665
BglII AGATCT 1 cut(s) 486
BisI GCNGC 6 cut(s) 52, 76, 79, 144, 233, 874
BlsI GCNGC 6 cut(s) 53, 77, 80, 145, 234, 875
Bme18I GGWCC 1 cut(s) 860
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 860
BmiI GGNNCC 1 cut(s) 322
BmrI ACTGGG 2 cut(s) 453, 514
BmsI GCATC 2 cut(s) 171, 785
BmuI ACTGGG 2 cut(s) 453, 514
BpiI GAAGAC 3 cut(s) 141, 396, 484
BplI GAGNNNNNCTC 2 cut(s) 835, 867
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 3 cut(s) 533, 944, 974
BsaBI GATNNNNATC 1 cut(s) 630
BsaJI CCNNGG 5 cut(s) 22, 73, 182, 730, 806
Bse1I ACTGG 2 cut(s) 459, 509
Bse21I CCTNAGG 2 cut(s) 192, 864
Bse8I GATNNNNATC 1 cut(s) 630
BseDI CCNNGG 5 cut(s) 22, 73, 182, 730, 806
BseJI GATNNNNATC 1 cut(s) 630
BseMII CTCAG 6 cut(s) 206, 438, 652, 743, 759, 855
BseNI ACTGG 2 cut(s) 459, 509
BseRI GAGGAG 1 cut(s) 977
BseXI GCAGC 3 cut(s) 130, 244, 885
Bsh1236I CGCG 5 cut(s) 49, 75, 103, 170, 980
Bsh1285I CGRYCG 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 482
BslFI GGGAC 2 cut(s) 168, 968
BsmAI GTCTC 1 cut(s) 641
BsmBI CGTCTC 1 cut(s) 641
BsmFI GGGAC 2 cut(s) 168, 968
BsmI GAATGC 2 cut(s) 716, 1009
BsoBI CYCGRG 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 497
Bsp1407I TGTACA 2 cut(s) 399, 414
Bsp143I GATC 4 cut(s) 26, 408, 486, 775
Bsp19I CCATGG 1 cut(s) 730
BspACI CCGC 6 cut(s) 52, 73, 75, 78, 141, 790
BspCNI CTCAG 6 cut(s) 205, 437, 651, 744, 760, 856
BspFNI CGCG 5 cut(s) 49, 75, 103, 170, 980
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 2 cut(s) 34, 770
BspT104I TTCGAA 1 cut(s) 497
BspTI CTTAAG 1 cut(s) 359
BsrGI TGTACA 2 cut(s) 399, 414
BsrI ACTGG 2 cut(s) 459, 509
BssECI CCNNGG 5 cut(s) 22, 73, 182, 730, 806
BssMI GATC 4 cut(s) 26, 408, 486, 775
BssNAI GTATAC 1 cut(s) 649
BssT1I CCWWGG 2 cut(s) 730, 806
Bst1107I GTATAC 1 cut(s) 649
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 905
BstAFI CTTAAG 1 cut(s) 359
BstAUI TGTACA 2 cut(s) 399, 414
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 273
BstDSI CCRYGG 4 cut(s) 22, 73, 182, 730
BstFNI CGCG 5 cut(s) 49, 75, 103, 170, 980
BstHHI GCGC 4 cut(s) 51, 172, 800, 980
BstKTI GATC 4 cut(s) 29, 411, 489, 778
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 4 cut(s) 26, 408, 486, 775
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 4 cut(s) 84, 268, 754, 882
BstNSI RCATGY 1 cut(s) 406
BstUI CGCG 5 cut(s) 49, 75, 103, 170, 980
BstV1I GCAGC 3 cut(s) 130, 244, 885
BstV2I GAAGAC 3 cut(s) 141, 396, 484
BstX2I RGATCY 2 cut(s) 26, 486
BstYI RGATCY 2 cut(s) 26, 486
BstZ17I GTATAC 1 cut(s) 649
Bsu36I CCTNAGG 2 cut(s) 192, 864
BsuI GTATCC 1 cut(s) 665
BtgI CCRYGG 4 cut(s) 22, 73, 182, 730
BtgZI GCGATG 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 1033
BtsIMutI CAGTG 1 cut(s) 1033
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 4 cut(s) 51, 172, 800, 980
Cfr13I GGNCC 1 cut(s) 860
Cfr42I CCGCGG 1 cut(s) 76
CseI GACGC 3 cut(s) 92, 135, 176
Csp6I GTAC 3 cut(s) 400, 415, 942
CviAII CATG 3 cut(s) 403, 731, 815
CviQI GTAC 3 cut(s) 400, 415, 942
DpnI GATC 4 cut(s) 28, 410, 488, 777
DpnII GATC 4 cut(s) 26, 408, 486, 775
DraI TTTAAA 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 905
EarI CTCTTC 1 cut(s) 905
Eco130I CCWWGG 2 cut(s) 730, 806
Eco47I GGWCC 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 929
Eco81I CCTNAGG 2 cut(s) 192, 864
Eco88I CYCGRG 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 730, 806
ErhI CCWWGG 2 cut(s) 730, 806
Esp3I CGTCTC 1 cut(s) 641
FaeI CATG 3 cut(s) 406, 734, 818
FaqI GGGAC 2 cut(s) 168, 968
FatI CATG 3 cut(s) 402, 730, 814
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 6 cut(s) 52, 76, 79, 144, 233, 874
Fsp4HI GCNGC 6 cut(s) 52, 76, 79, 144, 233, 874
FspBI CTAG 2 cut(s) 176, 903
FspI TGCGCA 1 cut(s) 799
GlaI GCGC 4 cut(s) 50, 171, 799, 979
GluI GCNGC 6 cut(s) 52, 76, 79, 144, 233, 874
HgaI GACGC 3 cut(s) 92, 135, 176
HhaI GCGC 4 cut(s) 51, 172, 800, 980
Hin1II CATG 3 cut(s) 406, 734, 818
Hin6I GCGC 4 cut(s) 49, 170, 798, 978
HinP1I GCGC 4 cut(s) 49, 170, 798, 978
HindIII AAGCTT 3 cut(s) 288, 330, 452
HinfI GANTC 4 cut(s) 122, 480, 515, 631
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 116, 325, 427, 769
Hpy188III TCNNGA 5 cut(s) 153, 484, 539, 863, 923
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 3 cut(s) 108, 170, 254
HpyAV CCTTC 3 cut(s) 192, 339, 504
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 2 cut(s) 534, 944
HpyCH4V TGCA 3 cut(s) 383, 465, 1007
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 268, 754, 882
HpySE526I ACGT 2 cut(s) 534, 944
Hsp92II CATG 3 cut(s) 406, 734, 818
HspAI GCGC 4 cut(s) 49, 170, 798, 978
KspI CCGCGG 1 cut(s) 76
Kzo9I GATC 4 cut(s) 26, 408, 486, 775
LpnPI CCDG 6 cut(s) 179, 472, 490, 842, 876, 920
Lsp1109I GCAGC 3 cut(s) 130, 244, 885
LweI GCATC 2 cut(s) 171, 785
MaeI CTAG 2 cut(s) 176, 903
MaeII ACGT 2 cut(s) 534, 944
MaeIII GTNAC 3 cut(s) 560, 810, 889
MalI GATC 4 cut(s) 28, 410, 488, 777
MboI GATC 4 cut(s) 26, 408, 486, 775
MboII GAAGA 5 cut(s) 141, 401, 489, 922, 1025
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 26, 486
MluCI AATT 5 cut(s) 55, 378, 384, 419, 586
MlyI GAGTC 2 cut(s) 474, 524
MseI TTAA 6 cut(s) 63, 264, 360, 578, 680, 984
MspA1I CMGCKG 2 cut(s) 75, 143
MspCI CTTAAG 1 cut(s) 359
MunI CAATTG 1 cut(s) 384
Mva1269I GAATGC 2 cut(s) 716, 1009
MvnI CGCG 5 cut(s) 49, 75, 103, 170, 980
MwoI GCNNNNNNNGC 4 cut(s) 84, 268, 754, 882
NcoI CCATGG 1 cut(s) 730
NdeII GATC 4 cut(s) 26, 408, 486, 775
NlaIII CATG 3 cut(s) 406, 734, 818
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 810, 889
NsbI TGCGCA 1 cut(s) 799
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 497
PaeR7I CTCGAG 1 cut(s) 482
PciI ACATGT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 112, 480
PctI GAATGC 2 cut(s) 716, 1009
PfeI GAWTC 2 cut(s) 122, 631
PkrI GCNGC 6 cut(s) 53, 77, 80, 145, 234, 875
PleI GAGTC 2 cut(s) 474, 523
PpsI GAGTC 2 cut(s) 474, 523
PscI ACATGT 1 cut(s) 402
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 860
PsuI RGATCY 2 cut(s) 26, 486
RsaI GTAC 3 cut(s) 401, 416, 943
RsaNI GTAC 3 cut(s) 400, 415, 942
SacII CCGCGG 1 cut(s) 76
SaqAI TTAA 6 cut(s) 63, 264, 360, 578, 680, 984
SatI GCNGC 6 cut(s) 52, 76, 79, 144, 233, 874
Sau3AI GATC 4 cut(s) 26, 408, 486, 775
Sau96I GGNCC 1 cut(s) 860
SchI GAGTC 2 cut(s) 474, 524
SfaNI GCATC 2 cut(s) 171, 785
Sfr274I CTCGAG 1 cut(s) 482
Sfr303I CCGCGG 1 cut(s) 76
SfuI TTCGAA 1 cut(s) 497
SgrBI CCGCGG 1 cut(s) 76
SinI GGWCC 1 cut(s) 860
SlaI CTCGAG 1 cut(s) 482
SmlI CTYRAG 5 cut(s) 359, 482, 512, 923, 989
SmoI CTYRAG 5 cut(s) 359, 482, 512, 923, 989
Sse9I AATT 5 cut(s) 55, 378, 384, 419, 586
SsiI CCGC 6 cut(s) 52, 73, 75, 78, 141, 790
SspMI CTAG 2 cut(s) 176, 903
StyI CCWWGG 2 cut(s) 730, 806
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 2 cut(s) 537, 947
TaqI TCGA 6 cut(s) 165, 483, 497, 590, 708, 774
TaqII GACCGA 1 cut(s) 649
TasI AATT 5 cut(s) 55, 378, 384, 419, 586
TatI WGTACW 2 cut(s) 399, 414
TauI GCSGC 3 cut(s) 54, 78, 81
TfiI GAWTC 2 cut(s) 122, 631
Tru1I TTAA 6 cut(s) 63, 264, 360, 578, 680, 984
Tru9I TTAA 6 cut(s) 63, 264, 360, 578, 680, 984
TscAI CASTG 1 cut(s) 1033
TseFI GTSAC 2 cut(s) 810, 889
TseI GCWGC 3 cut(s) 143, 232, 873
Tsp45I GTSAC 2 cut(s) 810, 889
TspDTI ATGAA 3 cut(s) 230, 342, 831
TspGWI ACGGA 4 cut(s) 39, 202, 489, 632
TspRI CASTG 1 cut(s) 1033
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 860
XapI RAATTY 2 cut(s) 419, 586
XceI RCATGY 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 2 cut(s) 176, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.