Rorug06G0156000

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010353
Physical Location & Seq
Reverse (-)
22367450 .. 22367863
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0156000.1

Sequence Viewer

Length: 414 bp
ATGGCTTTGTTCTTTGGAAAGGCAGTGCTACTCATGCTAGTTCTATCATTGACAGTAATGACAATTTCTGGTGAAGATATTGGACGCAAGACAAGGCATATCAAAATCTTAAATGATTTGGATGGAAACTTTCCCCTGACTGTTCATTGTAAATCTGCTGATGATGATATTGGTGAGAAAACCCTCCTCCGTGGTGCTGTATATGAGTTCAGTTTTCAACCCAAGGTCTTTCCGAGGACTACACTGTTCTTTTGCAGTTTTCAGTGGAATAGTATACTTCATCATTTAAATGTGTATTATGAGGGAATTGATTGCAGTGAGTGTTGGTATACTGTAAAGAAAGATGGCAAAAATATATGCAGATATGACTTTGCCGTTGGTCAGTATGACTTATGTAATGTCTGGAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

137

Amino Acids

15.79

Weight (kDa)

6.05

Isoelectric Point (pI)

26.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 33 - 135 2.8e-20 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07310 AT3G07310 AT5G48590
fragaria_vesca FvH4_2g18230 FvH4_2g18230 FvH4_2g18230
malus_domestica MD05G1166700.v1.1 MD10G1156700.v1.1
prunus_persica Prupe.8G195000_v2.0.a1
pyrus_communis pycom05g15550 pycom10g13490
rosa_chinensis RchiOBHm_Chr6g0283601
rosa_laevigata RLG00000012813
rosa_multiflora Rmu_co8416891.1_g000001
rosa_roxburghii Rroxscaffold_7G00185360
rosa_rugosa Rorug06G0156000
rosa_samantha Rh6AG267800 Rh6BG270300 Rh6CG270100 Rh6DG263800
rosa_wichuraiana Rw6G023200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 274, 329
AgsI TTSAA 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 83, 185
BccI CCATC 2 cut(s) 116, 338
BceAI ACGGC 1 cut(s) 359
BfaI CTAG 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 190, 222, 233
BseDI CCNNGG 3 cut(s) 190, 222, 233
BseGI GGATG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 190, 222, 233
BssNAI GTATAC 2 cut(s) 275, 330
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 2 cut(s) 275, 330
Bst4CI ACNGT 4 cut(s) 55, 142, 246, 334
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstZ17I GTATAC 2 cut(s) 275, 330
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 30, 322
BtsIMutI CAGTG 4 cut(s) 30, 242, 269, 322
CseI GACGC 1 cut(s) 93
CviAII CATG 1 cut(s) 34
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DraI TTTAAA 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 37
FatI CATG 1 cut(s) 33
FblI GTMKAC 2 cut(s) 274, 329
FokI GGATG 1 cut(s) 134
FspBI CTAG 1 cut(s) 38
HgaI GACGC 1 cut(s) 93
Hin1II CATG 1 cut(s) 37
HphI GGTGA 2 cut(s) 83, 185
Hpy166II GTNNAC 2 cut(s) 275, 330
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 2 cut(s) 275, 330
HpyCH4III ACNGT 4 cut(s) 55, 142, 246, 334
HpyCH4V TGCA 3 cut(s) 255, 315, 360
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
Hsp92II CATG 1 cut(s) 37
LpnPI CCDG 3 cut(s) 54, 149, 388
MaeI CTAG 1 cut(s) 38
MboII GAAGA 1 cut(s) 86
MluCI AATT 2 cut(s) 63, 306
MnlI CCTC 4 cut(s) 194, 197, 228, 295
MseI TTAA 2 cut(s) 110, 287
MslI CAYNNNNRTG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 2 cut(s) 110, 287
SetI ASST 1 cut(s) 228
SgeI CNNG 9 cut(s) 46, 50, 81, 100, 105, 148, 203, 235, 246
SmiI ATTTAAAT 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 2 cut(s) 63, 306
SspMI CTAG 1 cut(s) 38
StyI CCWWGG 1 cut(s) 222
SwaI ATTTAAAT 1 cut(s) 288
TaaI ACNGT 4 cut(s) 55, 142, 246, 334
TasI AATT 2 cut(s) 63, 306
Tru1I TTAA 2 cut(s) 110, 287
Tru9I TTAA 2 cut(s) 110, 287
TscAI CASTG 4 cut(s) 30, 249, 269, 322
TspDTI ATGAA 2 cut(s) 134, 269
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 4 cut(s) 30, 249, 269, 322
XmiI GTMKAC 2 cut(s) 274, 329
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.