RchiOBHm_Chr6g0283601

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010353
Physical Location & Seq
Forward (+)
46833426 .. 46835230
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25430

Sequence Viewer

Length: 741 bp
ATGTACCTGTTGATCTTTTACAAGTTTTCTGAGGTCAAAGTTCCTTTGGTTCCTAAACTTTCTAGATGCATCTACAATGATAGACTGGAGATATTGCCTGCAAAGGATTGGGAGCTAGAGTCCATTTACAGCTTGGAGGTTTTGGAGATGATAAGGGAACATGTCACCACTGTCATTGGCTTGAGAGCAAATTCTAGTGTCACAGACAATTGGGCAATGACAAAGATAACCCGCCAGACACTTGGCCGAGTATATGTGGCCTCCATCTTGTATGGCTACTTTTTGAAATCTGTCTCATTGAGGCATCGCCTGGAACGAAGTCTATTTCTTGAAACCCAAGACCTTCATCTGAGTTGTAGAACCTCCCTTCAGGAAATGTCTCCTCATGGAATAAAAAGTCTGCTCTTTGGCCACGTCAGCAAATTTCAATCGGAGTGTGTAGGGTCAAGTAGGCAGGAAAAGACACATGGAAAGTTGAAATGTTATGTGATGGGGTTTGATCCTGAGACACTACAGAGATGTGCAAAATTGAGATCTGAGGAGGCTGTGAATTTAATTAAAAATCACTGTTGTGCACTTTTTGGGGATGATGCGGAAATGGGTTCTCTTGAGTCGGATGAAATTATCTCTACTTCATTTTCAAGCCTGAAGAGGCTAGTTTTGGAGGCTGTTGCTTTCGGTTCTTTCCTTTGGGACACAGAAGAATGCATTGATAGTGTTTATAAGCTTAAGGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

246

Amino Acids

28.2

Weight (kDa)

6.4

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 38 - 108 1.6e-17 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07310 AT3G07310 AT5G48590
fragaria_vesca FvH4_2g18230 FvH4_2g18230 FvH4_2g18230
malus_domestica MD05G1166700.v1.1 MD10G1156700.v1.1
prunus_persica Prupe.8G195000_v2.0.a1
pyrus_communis pycom05g15550 pycom10g13490
rosa_chinensis RchiOBHm_Chr6g0283601
rosa_laevigata RLG00000012813
rosa_multiflora Rmu_co8416891.1_g000001
rosa_roxburghii Rroxscaffold_7G00185360
rosa_rugosa Rorug06G0156000
rosa_samantha Rh6AG267800 Rh6BG270300 Rh6CG270100 Rh6DG263800
rosa_wichuraiana Rw6G023200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AciI CCGC 2 cut(s) 232, 593
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 2 cut(s) 244, 409
AcsI RAATTY 3 cut(s) 190, 422, 550
AcuI CTGAAG 2 cut(s) 353, 668
AfaI GTAC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 5 cut(s) 286, 332, 428, 478, 642
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 309
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 3 cut(s) 115, 132, 727
AluI AGCT 3 cut(s) 115, 132, 727
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 3 cut(s) 298, 384, 500
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 1 cut(s) 494
AoxI GGCC 3 cut(s) 244, 258, 409
ApaLI GTGCAC 1 cut(s) 573
ApoI RAATTY 3 cut(s) 190, 422, 550
AsuHPI GGTGA 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 577
BccI CCATC 2 cut(s) 272, 484
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 3 cut(s) 298, 384, 500
BfaI CTAG 4 cut(s) 63, 116, 195, 656
BfmI CTRYAG 1 cut(s) 512
BfrI CTTAAG 1 cut(s) 728
BglII AGATCT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 311
BmgBI CACGTC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 4 cut(s) 56, 78, 313, 580
BpmI CTGGAG 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 202, 629
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 2 cut(s) 592, 622
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 4 cut(s) 21, 341, 495, 528
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 2 cut(s) 372, 554
BseSI GKGCMC 1 cut(s) 577
BshFI GGCC 3 cut(s) 246, 260, 411
BsiHKAI GWGCWC 1 cut(s) 577
BslFI GGGAC 1 cut(s) 707
BsmAI GTCTC 3 cut(s) 298, 384, 500
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 3 cut(s) 246, 260, 411
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 12, 499, 533
BspACI CCGC 2 cut(s) 232, 593
BspANI GGCC 3 cut(s) 246, 260, 411
BspCNI CTCAG 4 cut(s) 22, 342, 496, 529
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 494
BspTI CTTAAG 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 90
BssMI GATC 3 cut(s) 12, 499, 533
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 172, 569
Bst6I CTCTTC 1 cut(s) 644
BstAFI CTTAAG 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 4 cut(s) 30, 350, 504, 537
BstF5I GGATG 2 cut(s) 592, 622
BstKTI GATC 3 cut(s) 15, 502, 536
BstMAI GTCTC 3 cut(s) 298, 384, 500
BstMBI GATC 3 cut(s) 12, 499, 533
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 1 cut(s) 512
BstSLI GKGCMC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 533
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 3 cut(s) 246, 260, 411
BtgZI GCGATG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 592, 622
BtsIMutI CAGTG 2 cut(s) 168, 565
Cac8I GCNNGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 3 cut(s) 161, 386, 467
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 30, 350, 504, 537
DpnI GATC 3 cut(s) 14, 501, 535
DpnII GATC 3 cut(s) 12, 499, 533
EaeI YGGCCR 2 cut(s) 244, 409
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
Eco57I CTGAAG 2 cut(s) 353, 668
EcoRII CCWGG 1 cut(s) 309
EcoT22I ATGCAT 2 cut(s) 71, 710
FaeI CATG 3 cut(s) 164, 389, 470
FaiI YATR 8 cut(s) 162, 253, 255, 273, 387, 468, 486, 723
FaqI GGGAC 1 cut(s) 707
FatI CATG 3 cut(s) 160, 385, 466
FauI CCCGC 1 cut(s) 239
FokI GGATG 2 cut(s) 599, 629
FspBI CTAG 4 cut(s) 63, 116, 195, 656
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 3 cut(s) 246, 260, 411
Hin1II CATG 3 cut(s) 164, 389, 470
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 2 cut(s) 119, 611
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 575
Hpy188I TCNGA 5 cut(s) 31, 351, 433, 538, 616
Hpy188III TCNNGA 5 cut(s) 63, 329, 371, 503, 608
Hpy8I GTNNAC 1 cut(s) 575
HpyAV CCTTC 2 cut(s) 353, 377
HpyCH4III ACNGT 2 cut(s) 172, 569
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 5 cut(s) 69, 101, 524, 575, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
HpyF3I CTNAG 4 cut(s) 30, 350, 504, 537
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 3 cut(s) 164, 389, 470
Kzo9I GATC 3 cut(s) 12, 499, 533
LmnI GCTCC 1 cut(s) 112
LweI GCATC 4 cut(s) 56, 78, 313, 580
MaeI CTAG 4 cut(s) 63, 116, 195, 656
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 163, 199
MalI GATC 3 cut(s) 14, 501, 535
MboI GATC 3 cut(s) 12, 499, 533
MboII GAAGA 2 cut(s) 661, 713
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 7 cut(s) 190, 208, 422, 527, 550, 555, 621
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 2 cut(s) 128, 620
MmeI TCCRAC 1 cut(s) 594
Mox20I TGGCCA 1 cut(s) 411
Mph1103I ATGCAT 2 cut(s) 71, 710
MscI TGGCCA 1 cut(s) 411
MseI TTAA 3 cut(s) 554, 558, 729
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 728
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 417
NdeII GATC 3 cut(s) 12, 499, 533
NlaIII CATG 3 cut(s) 164, 389, 470
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 163, 199
NsiI ATGCAT 2 cut(s) 71, 710
NspI RCATGY 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 570
PacI TTAATTAA 1 cut(s) 558
PciI ACATGT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 1 cut(s) 710
PleI GAGTC 2 cut(s) 127, 619
PpsI GAGTC 2 cut(s) 127, 619
PscI ACATGT 1 cut(s) 160
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 3 cut(s) 554, 558, 729
Sau3AI GATC 3 cut(s) 12, 499, 533
SchI GAGTC 2 cut(s) 128, 620
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 577
SetI ASST 9 cut(s) 9, 36, 117, 134, 141, 345, 365, 417, 729
SfaNI GCATC 4 cut(s) 56, 78, 313, 580
SfcI CTRYAG 1 cut(s) 512
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 3 cut(s) 181, 608, 728
SmoI CTYRAG 3 cut(s) 181, 608, 728
Sse9I AATT 7 cut(s) 190, 208, 422, 527, 550, 555, 621
SsiI CCGC 2 cut(s) 232, 593
SspMI CTAG 4 cut(s) 63, 116, 195, 656
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 172, 569
TaiI ACGT 1 cut(s) 417
TasI AATT 7 cut(s) 190, 208, 422, 527, 550, 555, 621
Tru1I TTAA 3 cut(s) 554, 558, 729
Tru9I TTAA 3 cut(s) 554, 558, 729
TscAI CASTG 2 cut(s) 175, 572
TseFI GTSAC 2 cut(s) 163, 199
Tsp45I GTSAC 2 cut(s) 163, 199
TspDTI ATGAA 3 cut(s) 335, 624, 633
TspRI CASTG 2 cut(s) 175, 572
Vha464I CTTAAG 1 cut(s) 728
VneI GTGCAC 1 cut(s) 573
XapI RAATTY 3 cut(s) 190, 422, 550
XbaI TCTAGA 1 cut(s) 62
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 4 cut(s) 63, 116, 195, 656
Zsp2I ATGCAT 2 cut(s) 71, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.