Rmu_co8416891.1_g000001

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8416891.1
OG0010353
Physical Location & Seq
Reverse (-)
270 .. 1049
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8416891.1_g000001.1.cds

Sequence Viewer

Length: 780 bp
ctgaaggagcagcagtgccagattgctgttgaagatgtcatgtacctgttgatcttttacaagttttctgaggtcaaagttcctttggttcctaaactttctagatgcatctacaatgatagactggagatattgcctgcaaaggattgggagctagagtccatttacagcttggaggttttggagatgataagggaacatgtcaccactgtcattggcttgagagcaaattctagtgtcacagacaattgggcaatgacaaagataacccgccagacacttggccgagtatatgtggcctccatcttatatggctactttttgaaatctgtctcattgaggcatcgcctggaacgaagtctatttcttgaaacccaagaccttcatctgagttgtagaacctcccttcaggaaatgtctcctcatggaataaaaagtcttctctttggccacgtcggcaaatttcaatcggagtgtgtagggtcaagtaggcaggaaaagacacatggaaagttgaaatgttatgtgatggggtttgatcccgagacactacagagatgtgcaaaattgagatctgaggaggctgtgaatttaattaaaaatcactgttgtgcactttttggagatgatgcggaaatgggttctcttgagtcggatgaagttatctctacttcattttcaagcctgaagaggctagttttggaggctgttgctttcggttctttcctttgggacacagaagaatgcattgatagtgtttataagcttaaggagaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

259

Amino Acids

29.64

Weight (kDa)

6.03

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07310 AT3G07310 AT5G48590
fragaria_vesca FvH4_2g18230 FvH4_2g18230 FvH4_2g18230
malus_domestica MD05G1166700.v1.1 MD10G1156700.v1.1
prunus_persica Prupe.8G195000_v2.0.a1
pyrus_communis pycom05g15550 pycom10g13490
rosa_chinensis RchiOBHm_Chr6g0283601
rosa_laevigata RLG00000012813
rosa_multiflora Rmu_co8416891.1_g000001
rosa_roxburghii Rroxscaffold_7G00185360
rosa_rugosa Rorug06G0156000
rosa_samantha Rh6AG267800 Rh6BG270300 Rh6CG270100 Rh6DG263800
rosa_wichuraiana Rw6G023200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 762
AciI CCGC 2 cut(s) 271, 632
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 2 cut(s) 283, 448
AcsI RAATTY 3 cut(s) 229, 461, 589
AcuI CTGAAG 3 cut(s) 23, 392, 707
AfaI GTAC 1 cut(s) 44
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 6 cut(s) 32, 325, 371, 467, 517, 681
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 348
AleI CACNNNNGTG 1 cut(s) 609
AluBI AGCT 3 cut(s) 154, 171, 766
AluI AGCT 3 cut(s) 154, 171, 766
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 3 cut(s) 337, 423, 539
Alw44I GTGCAC 1 cut(s) 612
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 3 cut(s) 283, 297, 448
ApaLI GTGCAC 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 3 cut(s) 229, 461, 589
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 616
BalI TGGCCA 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 311, 523
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 3 cut(s) 337, 423, 539
BfaI CTAG 4 cut(s) 102, 155, 234, 695
BfmI CTRYAG 1 cut(s) 551
BfrI CTTAAG 1 cut(s) 767
BglI GCCNNNNNGGC 1 cut(s) 456
BglII AGATCT 1 cut(s) 572
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 542
BmgBI CACGTC 1 cut(s) 454
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 4 cut(s) 95, 117, 352, 619
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 241, 668
BsaXI ACNNNNNCTCC 3 cut(s) 29, 143, 173
Bse1I ACTGG 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 661
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 3 cut(s) 60, 380, 567
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 411, 593
BseSI GKGCMC 1 cut(s) 616
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 285, 299, 450
BsiHKAI GWGCWC 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 746
BsmAI GTCTC 3 cut(s) 337, 423, 539
BsmFI GGGAC 1 cut(s) 746
BsmI GAATGC 1 cut(s) 749
BsnI GGCC 3 cut(s) 285, 299, 450
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 3 cut(s) 51, 538, 572
BspACI CCGC 2 cut(s) 271, 632
BspANI GGCC 3 cut(s) 285, 299, 450
BspCNI CTCAG 3 cut(s) 61, 381, 568
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 533
BspTI CTTAAG 1 cut(s) 767
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 129
BssMI GATC 3 cut(s) 51, 538, 572
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 211, 608
Bst6I CTCTTC 1 cut(s) 683
BstAFI CTTAAG 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 69, 389, 576
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 3 cut(s) 54, 541, 575
BstMAI GTCTC 3 cut(s) 337, 423, 539
BstMBI GATC 3 cut(s) 51, 538, 572
BstMWI GCNNNNNNNGC 1 cut(s) 456
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 551
BstSLI GKGCMC 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 3 cut(s) 285, 299, 450
BtgZI GCGATG 1 cut(s) 329
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 661
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 20, 207, 604
Cac8I GCNNGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 4 cut(s) 40, 200, 425, 506
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 69, 389, 576
DpnI GATC 3 cut(s) 53, 540, 574
DpnII GATC 3 cut(s) 51, 538, 572
EaeI YGGCCR 2 cut(s) 283, 448
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
Eco57I CTGAAG 3 cut(s) 23, 392, 707
Eco88I CYCGRG 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 348
EcoT22I ATGCAT 2 cut(s) 110, 749
FaeI CATG 4 cut(s) 43, 203, 428, 509
FaqI GGGAC 1 cut(s) 746
FatI CATG 4 cut(s) 39, 199, 424, 505
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 668
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 4 cut(s) 102, 155, 234, 695
GluI GCNGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 146
HaeIII GGCC 3 cut(s) 285, 299, 450
Hin1II CATG 4 cut(s) 43, 203, 428, 509
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 2 cut(s) 158, 650
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 614
Hpy188I TCNGA 5 cut(s) 70, 390, 472, 577, 655
Hpy188III TCNNGA 5 cut(s) 102, 368, 410, 542, 647
Hpy8I GTNNAC 1 cut(s) 614
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 392, 416
HpyCH4III ACNGT 2 cut(s) 211, 608
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 5 cut(s) 108, 140, 563, 614, 747
HpyF10VI GCNNNNNNNGC 1 cut(s) 456
HpyF3I CTNAG 3 cut(s) 69, 389, 576
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 4 cut(s) 43, 203, 428, 509
Kzo9I GATC 3 cut(s) 51, 538, 572
LmnI GCTCC 2 cut(s) 7, 151
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 4 cut(s) 95, 117, 352, 619
MaeI CTAG 4 cut(s) 102, 155, 234, 695
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 202, 238
MalI GATC 3 cut(s) 53, 540, 574
MboI GATC 3 cut(s) 51, 538, 572
MboII GAAGA 4 cut(s) 44, 431, 700, 752
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 1 cut(s) 616
MlsI TGGCCA 1 cut(s) 450
MluCI AATT 6 cut(s) 229, 247, 461, 566, 589, 594
MluNI TGGCCA 1 cut(s) 450
MlyI GAGTC 2 cut(s) 167, 659
MmeI TCCRAC 1 cut(s) 633
Mox20I TGGCCA 1 cut(s) 450
Mph1103I ATGCAT 2 cut(s) 110, 749
MscI TGGCCA 1 cut(s) 450
MseI TTAA 3 cut(s) 593, 597, 768
MslI CAYNNNNRTG 1 cut(s) 609
Msp20I TGGCCA 1 cut(s) 450
MspCI CTTAAG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 247
Mva1269I GAATGC 1 cut(s) 749
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 456
NdeII GATC 3 cut(s) 51, 538, 572
NlaIII CATG 4 cut(s) 43, 203, 428, 509
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 202, 238
NsiI ATGCAT 2 cut(s) 110, 749
NspI RCATGY 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 609
PacI TTAATTAA 1 cut(s) 597
PciI ACATGT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 352
PctI GAATGC 1 cut(s) 749
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 2 cut(s) 166, 658
PpsI GAGTC 2 cut(s) 166, 658
PscI ACATGT 1 cut(s) 199
PsiI TTATAA 1 cut(s) 762
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 3 cut(s) 593, 597, 768
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 3 cut(s) 51, 538, 572
SchI GAGTC 2 cut(s) 167, 659
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 616
SetI ASST 9 cut(s) 48, 75, 156, 173, 180, 384, 404, 456, 768
SfaNI GCATC 4 cut(s) 95, 117, 352, 619
SfcI CTRYAG 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 3 cut(s) 220, 647, 767
SmoI CTYRAG 3 cut(s) 220, 647, 767
Sse9I AATT 6 cut(s) 229, 247, 461, 566, 589, 594
SsiI CCGC 2 cut(s) 271, 632
SspMI CTAG 4 cut(s) 102, 155, 234, 695
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 211, 608
TaiI ACGT 1 cut(s) 456
TasI AATT 6 cut(s) 229, 247, 461, 566, 589, 594
Tru1I TTAA 3 cut(s) 593, 597, 768
Tru9I TTAA 3 cut(s) 593, 597, 768
TscAI CASTG 3 cut(s) 20, 214, 611
TseFI GTSAC 2 cut(s) 202, 238
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 2 cut(s) 202, 238
TspDTI ATGAA 3 cut(s) 374, 663, 672
TspRI CASTG 3 cut(s) 20, 214, 611
Vha464I CTTAAG 1 cut(s) 767
VneI GTGCAC 1 cut(s) 612
XapI RAATTY 3 cut(s) 229, 461, 589
XbaI TCTAGA 1 cut(s) 101
XceI RCATGY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XspI CTAG 4 cut(s) 102, 155, 234, 695
Zsp2I ATGCAT 2 cut(s) 110, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.