FvH4_2g18230

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010353
Physical Location & Seq
Forward (+)
15617732 .. 15620223
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18230.t2

Sequence Viewer

Length: 741 bp
ATGTACCTCTTGATCTTTTACAAGTTTTCTGAGGTCAAAGTTCCTTTGGTTCCTAAACTTTCTAAATGCATCTACAATGATAGACTGGAGATATTGCCTGCAAAGGACTGGGAGCTAGAGTCCATTTACAGCTTGGAGGTTTTGGAGATGATAAGGGAACATGTCACCACTGTCATTGGTTTGAGAGCAAATTCTAGTGTCACAGACAATTGGGCAATGACAAAGATAACCCGCCAGACGCTTGGCCGAGTATATGTGGCCTCCATCTTATATGGCTACTTTCTGAAATCTGTCTCATTGAGGCATCGCCTGGAACGGAGTCTATTTCTTGAAAGCCAAGACCTTCATCTGAGTTGTAGAACCTCCCTTCAGGAAATGTCTCCTCATGGAATAAAAAGTCTTATTTTTGGCCACGTTGGTAAAATTCAATCGGAGTGTGTAGGTTCAAATAGGCTGGAAAAGACACACGGAAAGTTGAAGTGTTATGTGATGGGGTTTGATCCTGAGACACTGCAGAGATGTGCAAAATTGAGATCTGAGGAGTCTGTAGATTTGATTAAAAATCACTGTTGTGCACTTTTTGGGGATGATGCGGAAATGGGTTCACCTGAGATAGATGAAGTTATCTCTACTTCCTTTTCGAGCCTAAAGAGGCTAGTTTTGGAGGCTGTTGCTTTTGGTTCTTTCCTTTGGGACACAGAAGAATGCATTGATAGTGTTTATAAGCTTAAGGAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

247

Amino Acids

28.12

Weight (kDa)

6.19

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 114 - 241 8.9e-19 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010353)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07310 AT3G07310 AT5G48590
fragaria_vesca FvH4_2g18230 FvH4_2g18230 FvH4_2g18230
malus_domestica MD05G1166700.v1.1 MD10G1156700.v1.1
prunus_persica Prupe.8G195000_v2.0.a1
pyrus_communis pycom05g15550 pycom10g13490
rosa_chinensis RchiOBHm_Chr6g0283601
rosa_laevigata RLG00000012813
rosa_multiflora Rmu_co8416891.1_g000001
rosa_roxburghii Rroxscaffold_7G00185360
rosa_rugosa Rorug06G0156000
rosa_samantha Rh6AG267800 Rh6BG270300 Rh6CG270100 Rh6DG263800
rosa_wichuraiana Rw6G023200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AciI CCGC 2 cut(s) 232, 593
AclWI GGATC 1 cut(s) 494
AcoI YGGCCR 2 cut(s) 244, 409
AcsI RAATTY 2 cut(s) 190, 423
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 1 cut(s) 5
AflII CTTAAG 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 4 cut(s) 332, 428, 447, 478
AjnI CCWGG 1 cut(s) 309
AleI CACNNNNGTG 1 cut(s) 570
AluBI AGCT 3 cut(s) 115, 132, 727
AluI AGCT 3 cut(s) 115, 132, 727
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 3 cut(s) 298, 384, 500
Alw44I GTGCAC 1 cut(s) 573
AlwI GGATC 1 cut(s) 494
AoxI GGCC 3 cut(s) 244, 258, 409
ApaLI GTGCAC 1 cut(s) 573
ApoI RAATTY 2 cut(s) 190, 423
AsuHPI GGTGA 2 cut(s) 157, 597
BaeGI GKGCMC 1 cut(s) 577
BalI TGGCCA 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 577
BccI CCATC 2 cut(s) 272, 484
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 3 cut(s) 298, 384, 500
BfaI CTAG 3 cut(s) 116, 195, 656
BfmI CTRYAG 2 cut(s) 512, 546
BfrI CTTAAG 1 cut(s) 728
BglII AGATCT 1 cut(s) 533
Bme1390I CCNGG 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 311
BmrI ACTGGG 1 cut(s) 118
BmsI GCATC 3 cut(s) 78, 313, 580
BmuI ACTGGG 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse1I ACTGG 2 cut(s) 90, 113
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 592
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 5 cut(s) 21, 341, 495, 528, 600
BseNI ACTGG 2 cut(s) 90, 113
BseRI GAGGAG 2 cut(s) 372, 554
BseSI GKGCMC 1 cut(s) 577
BshFI GGCC 3 cut(s) 246, 260, 411
BsiHKAI GWGCWC 1 cut(s) 577
BslFI GGGAC 1 cut(s) 707
BsmAI GTCTC 3 cut(s) 298, 384, 500
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 3 cut(s) 246, 260, 411
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 12, 499, 533
BspACI CCGC 2 cut(s) 232, 593
BspANI GGCC 3 cut(s) 246, 260, 411
BspCNI CTCAG 5 cut(s) 22, 342, 496, 529, 601
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 1 cut(s) 516
BspPI GGATC 1 cut(s) 494
BspTI CTTAAG 1 cut(s) 728
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 90, 113
BssMI GATC 3 cut(s) 12, 499, 533
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 172, 569
BstAFI CTTAAG 1 cut(s) 728
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 5 cut(s) 30, 350, 504, 537, 609
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 3 cut(s) 15, 502, 536
BstMAI GTCTC 3 cut(s) 298, 384, 500
BstMBI GATC 3 cut(s) 12, 499, 533
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 512, 546
BstSLI GKGCMC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 533
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 3 cut(s) 246, 260, 411
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 3 cut(s) 168, 509, 565
Cac8I GCNNGC 1 cut(s) 99
CseI GACGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 161, 386
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 5 cut(s) 30, 350, 504, 537, 609
DpnI GATC 3 cut(s) 14, 501, 535
DpnII GATC 3 cut(s) 12, 499, 533
EaeI YGGCCR 2 cut(s) 244, 409
Eco57I CTGAAG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 309
EcoT22I ATGCAT 2 cut(s) 71, 710
FaeI CATG 2 cut(s) 164, 389
FaiI YATR 8 cut(s) 162, 253, 255, 271, 273, 387, 486, 723
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 160, 385
FauI CCCGC 1 cut(s) 239
FokI GGATG 1 cut(s) 599
FspBI CTAG 3 cut(s) 116, 195, 656
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 3 cut(s) 246, 260, 411
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 164, 389
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 3 cut(s) 119, 319, 542
HphI GGTGA 2 cut(s) 157, 597
Hpy166II GTNNAC 2 cut(s) 575, 605
Hpy188I TCNGA 5 cut(s) 31, 285, 351, 433, 538
Hpy188III TCNNGA 4 cut(s) 10, 329, 371, 503
Hpy8I GTNNAC 2 cut(s) 575, 605
HpyAV CCTTC 2 cut(s) 353, 377
HpyCH4III ACNGT 2 cut(s) 172, 569
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 6 cut(s) 69, 101, 514, 524, 575, 708
HpyF3I CTNAG 5 cut(s) 30, 350, 504, 537, 609
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 2 cut(s) 164, 389
Kzo9I GATC 3 cut(s) 12, 499, 533
LmnI GCTCC 1 cut(s) 112
LweI GCATC 3 cut(s) 78, 313, 580
MaeI CTAG 3 cut(s) 116, 195, 656
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 163, 199
MalI GATC 3 cut(s) 14, 501, 535
MboI GATC 3 cut(s) 12, 499, 533
MboII GAAGA 1 cut(s) 713
MfeI CAATTG 1 cut(s) 208
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 577
MlsI TGGCCA 1 cut(s) 411
MluCI AATT 4 cut(s) 190, 208, 423, 527
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 128, 328, 551
Mox20I TGGCCA 1 cut(s) 411
Mph1103I ATGCAT 2 cut(s) 71, 710
MscI TGGCCA 1 cut(s) 411
MseI TTAA 2 cut(s) 558, 729
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 728
MspR9I CCNGG 1 cut(s) 311
MunI CAATTG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 1 cut(s) 311
NdeII GATC 3 cut(s) 12, 499, 533
NlaIII CATG 2 cut(s) 164, 389
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 272
NmuCI GTSAC 2 cut(s) 163, 199
NsiI ATGCAT 2 cut(s) 71, 710
NspI RCATGY 1 cut(s) 164
OliI CACNNNNGTG 1 cut(s) 570
PciI ACATGT 1 cut(s) 160
PctI GAATGC 1 cut(s) 710
PleI GAGTC 3 cut(s) 127, 327, 550
PpsI GAGTC 3 cut(s) 127, 327, 550
PscI ACATGT 1 cut(s) 160
PsiI TTATAA 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 51
PstI CTGCAG 1 cut(s) 516
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 2 cut(s) 558, 729
Sau3AI GATC 3 cut(s) 12, 499, 533
SchI GAGTC 3 cut(s) 128, 328, 551
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 3 cut(s) 78, 313, 580
SfcI CTRYAG 2 cut(s) 512, 546
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 4 cut(s) 190, 208, 423, 527
SsiI CCGC 2 cut(s) 232, 593
SspMI CTAG 3 cut(s) 116, 195, 656
StyD4I CCNGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 172, 569
TaiI ACGT 1 cut(s) 417
TaqI TCGA 1 cut(s) 641
TasI AATT 4 cut(s) 190, 208, 423, 527
Tru1I TTAA 2 cut(s) 558, 729
Tru9I TTAA 2 cut(s) 558, 729
TscAI CASTG 3 cut(s) 175, 516, 572
TseFI GTSAC 2 cut(s) 163, 199
Tsp45I GTSAC 2 cut(s) 163, 199
TspDTI ATGAA 2 cut(s) 335, 633
TspGWI ACGGA 2 cut(s) 331, 483
TspRI CASTG 3 cut(s) 175, 516, 572
Vha464I CTTAAG 1 cut(s) 728
VneI GTGCAC 1 cut(s) 573
XapI RAATTY 2 cut(s) 190, 423
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 3 cut(s) 116, 195, 656
Zsp2I ATGCAT 2 cut(s) 71, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.