Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

19758881 .. 19762015

Gene Structure 3135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGACTGAAGTCACATTGAACCAAGAAGATCACTCGTACATGTTTGATGATGAAAATACTCCTGTGAAGGCATGTAGCGAGTTGGGTTACCATGTCACAACAGAGGACACGAACAGGAAAATGGAAGTGCACAGTGAGACACGCTCTGCTTTAAAAAGGCGTCGGATGTTGCAGTTTGAAGACCAACCTGAAACATCCCTTTTCAGCAGTGAGAGTTTCTCTGCAATCTTAAAATCAAGTGCTAGAGATGACACATTTGATGAGCTTTTACCCGAAGGGTCTCAGCTTATAGAAGGGTTTTCAGAAGACGCTTCTGCCTCTAGCTTCGAGGGCCTTGATCTGTACGCTGAAGAGTGGTATGCTGATTGCTTAAATGATGCTGAGACTCCAATGCTACCTGATGACTTAAACTTTGGTTCACCTGATGTTCAAGTAGATATTTCAGAGTATTTGAATGTGCCACCAGAAACAGAGACTAGGGAAGTTCAGCGGCCTGTGACTCGATCTTCTCCAAATGTTATCTTTAAAGGTAGGAAATCGTTTTCAAGGCCAGTTTCAAAGCTACCATCTTCAATCATCTATCCATTTGCATTCATCAAACCATGTGGGGTTCACGGTGGAATGACTCTCAAGGACATAAACCAGAAAATCCGAAATCCACCAGCAAAACCAAAGGCACACATAGAAGAGCCTGCAGTGATCCAAACTTCAGCATTCTCAGGGAAACCCGTTGTTGGAAAGACTAAAATCCGCACCGAAGGAGGAAAAGGAAGCATCACGATAATGAGGACTAGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.69

Weight (kDa)

5.05

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	490, 751
AclWI	GGATC	1 cut(s)	694
AcuI	CTGAAG	3 cut(s)	27, 369, 693
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	38, 344
AfiI	CCNNNNNNNGG	1 cut(s)	734
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	7 cut(s)	19, 179, 431, 454, 546, 558, 573
AluBI	AGCT	4 cut(s)	265, 286, 324, 562
AluI	AGCT	4 cut(s)	265, 286, 324, 562
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	4 cut(s)	131, 285, 377, 467
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	694
AoxI	GGCC	3 cut(s)	331, 491, 548
ApaLI	GTGCAC	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	132
BbsI	GAAGAC	2 cut(s)	186, 312
Bbv12I	GWGCWC	1 cut(s)	132
BccI	CCATC	1 cut(s)	574
BcoDI	GTCTC	4 cut(s)	131, 285, 377, 467
BfaI	CTAG	4 cut(s)	243, 321, 477, 792
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
BmgT120I	GGNCC	1 cut(s)	331
BmsI	GCATC	2 cut(s)	367, 783
BoxI	GACNNNNGTC	1 cut(s)	8
BpiI	GAAGAC	2 cut(s)	186, 312
BplI	GAGNNNNNCTC	4 cut(s)	128, 160, 203, 235
BpuEI	CTTGAG	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	1 cut(s)	551
BseGI	GGATG	2 cut(s)	171, 194
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMII	CTCAG	3 cut(s)	296, 372, 732
BseNI	ACTGG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	132
BshFI	GGCC	3 cut(s)	333, 493, 550
BsiHKAI	GWGCWC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	4 cut(s)	131, 285, 377, 467
BsmI	GAATGC	2 cut(s)	590, 713
BsnI	GGCC	3 cut(s)	333, 493, 550
Bso31I	GGTCTC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	28, 337, 503, 699
BspACI	CCGC	2 cut(s)	490, 751
BspANI	GGCC	3 cut(s)	333, 493, 550
BspCNI	CTCAG	3 cut(s)	295, 373, 731
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	551
BssMI	GATC	4 cut(s)	28, 337, 503, 699
BssNI	GRCGYC	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	134, 617
Bst6I	CTCTTC	2 cut(s)	345, 681
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	3 cut(s)	282, 381, 718
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	171, 194
BstKTI	GATC	4 cut(s)	31, 340, 506, 702
BstMAI	GTCTC	4 cut(s)	131, 285, 377, 467
BstMBI	GATC	4 cut(s)	28, 337, 503, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstNSI	RCATGY	2 cut(s)	43, 75
BstPAI	GACNNNNGTC	1 cut(s)	8
BstPI	GGTNACC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	132
BstV2I	GAAGAC	2 cut(s)	186, 312
BsuRI	GGCC	3 cut(s)	333, 493, 550
BtsCI	GGATG	2 cut(s)	171, 194
BtsI	GCAGTG	2 cut(s)	214, 702
BtsIMutI	CAGTG	3 cut(s)	139, 214, 702
Cac8I	GCNNGC	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	2 cut(s)	149, 317
Csp6I	GTAC	2 cut(s)	37, 343
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	4 cut(s)	40, 72, 92, 603
CviJI	RGCY	9 cut(s)	265, 286, 324, 333, 493, 550, 562, 691, 798
CviKI_1	RGCY	9 cut(s)	265, 286, 324, 333, 493, 550, 562, 691, 798
CviQI	GTAC	2 cut(s)	37, 343
DdeI	CTNAG	3 cut(s)	282, 381, 718
DpnI	GATC	4 cut(s)	30, 339, 505, 701
DpnII	GATC	4 cut(s)	28, 337, 503, 699
DraI	TTTAAA	2 cut(s)	153, 526
Eam1104I	CTCTTC	2 cut(s)	345, 681
EarI	CTCTTC	2 cut(s)	345, 681
Eco31I	GGTCTC	1 cut(s)	285
Eco57I	CTGAAG	3 cut(s)	27, 369, 693
Eco91I	GGTNACC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	86
FaeI	CATG	4 cut(s)	43, 75, 95, 606
FaiI	YATR	8 cut(s)	41, 73, 93, 290, 360, 604, 638, 683
FatI	CATG	4 cut(s)	39, 71, 91, 602
Fnu4HI	GCNGC	1 cut(s)	491
FokI	GGATG	2 cut(s)	178, 181
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	4 cut(s)	243, 321, 477, 792
GluI	GCNGC	1 cut(s)	491
HaeIII	GGCC	3 cut(s)	333, 493, 550
HgaI	GACGC	2 cut(s)	149, 317
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	43, 75, 95, 606
HinfI	GANTC	3 cut(s)	385, 499, 625
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	3 cut(s)	130, 419, 613
Hpy188I	TCNGA	4 cut(s)	165, 304, 445, 653
Hpy188III	TCNNGA	1 cut(s)	778
Hpy8I	GTNNAC	3 cut(s)	130, 419, 613
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	4 cut(s)	61, 269, 287, 752
HpyCH4III	ACNGT	2 cut(s)	134, 617
HpyCH4V	TGCA	5 cut(s)	130, 172, 224, 590, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	3 cut(s)	282, 381, 718
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	43, 75, 95, 606
Kzo9I	GATC	4 cut(s)	28, 337, 503, 699
LguI	GCTCTTC	1 cut(s)	681
LweI	GCATC	2 cut(s)	367, 783
MaeI	CTAG	4 cut(s)	243, 321, 477, 792
MaeIII	GTNAC	4 cut(s)	10, 86, 94, 496
MalI	GATC	4 cut(s)	30, 339, 505, 701
MboI	GATC	4 cut(s)	28, 337, 503, 699
MboII	GAAGA	7 cut(s)	38, 191, 317, 362, 498, 561, 698
MhlI	GDGCHC	1 cut(s)	132
MlyI	GAGTC	3 cut(s)	379, 493, 619
MmeI	TCCRAC	2 cut(s)	143, 715
MnlI	CCTC	6 cut(s)	97, 322, 328, 755, 780, 788
MseI	TTAA	5 cut(s)	152, 230, 371, 407, 525
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	490
Mva1269I	GAATGC	2 cut(s)	590, 713
MwoI	GCNNNNNNNGC	1 cut(s)	330
NdeII	GATC	4 cut(s)	28, 337, 503, 699
NlaIII	CATG	4 cut(s)	43, 75, 95, 606
NmuCI	GTSAC	3 cut(s)	10, 94, 496
NspI	RCATGY	2 cut(s)	43, 75
PciI	ACATGT	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	681
PctI	GAATGC	2 cut(s)	590, 713
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	3 cut(s)	379, 493, 619
PpsI	GAGTC	3 cut(s)	379, 493, 619
PscI	ACATGT	1 cut(s)	39
PshAI	GACNNNNGTC	1 cut(s)	8
PspEI	GGTNACC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	697
RsaI	GTAC	2 cut(s)	38, 344
RsaNI	GTAC	2 cut(s)	37, 343
RseI	CAYNNNNRTG	1 cut(s)	782
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	152, 230, 371, 407, 525
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	4 cut(s)	28, 337, 503, 699
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	3 cut(s)	379, 493, 619
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	8 cut(s)	190, 267, 288, 326, 400, 424, 532, 564
SfaNI	GCATC	2 cut(s)	367, 783
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SsiI	CCGC	2 cut(s)	490, 751
SspMI	CTAG	4 cut(s)	243, 321, 477, 792
TaaI	ACNGT	2 cut(s)	134, 617
TaqI	TCGA	2 cut(s)	327, 502
TauI	GCSGC	1 cut(s)	493
Tru1I	TTAA	5 cut(s)	152, 230, 371, 407, 525
Tru9I	TTAA	5 cut(s)	152, 230, 371, 407, 525
TscAI	CASTG	3 cut(s)	139, 214, 702
TseFI	GTSAC	3 cut(s)	10, 94, 496
Tsp45I	GTSAC	3 cut(s)	10, 94, 496
TspDTI	ATGAA	2 cut(s)	66, 583
TspRI	CASTG	3 cut(s)	139, 214, 702
VneI	GTGCAC	1 cut(s)	128
XceI	RCATGY	2 cut(s)	43, 75
XspI	CTAG	4 cut(s)	243, 321, 477, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.