Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008680

Physical Location & Seq

Genomic Coordinates Forward (+)

16024630 .. 16029183

Gene Structure 4554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGATTACAATAATGACAATAGTGAGCGTTGGGATTGGCACCGCAATCCTCATGTCCAAAAGGACTCCACTCCCGATATATCTGAATGCCTGTGGAATGGAGTGCCTCAGAATCAAGAGGACCTTTCATACATGTTGGATGATGAAACAACCCCTGTTAAGGCTTGTGGAGATTTGGCCTATGAGGTTAACCAAAGAGAATTTTTGGTTTCAGATAATAGAAACAAGGAACCAGAAGAGCAGAGGGAATCTTTCTCGCAAGTGAAAAGGCGTCGGATGCTACAATTTGACACTGAAGCTATGGATTCTTCCCTTTCAAGTGAAGACTTATCGTCTGCATTCTTGAAATCAAATGAGGGGATTGATTCAATTGAGGGTTTTGAAGCGACAAATTGGGTATCTGGGTTTTCAGAAAATGCATCTGCCTCTGGTTATGAATGCCTAGATGAATCACCGGATAGGTGGATCGAACAGTGCTTCACTGATCCTGCTGATATGCAGTTCAGCCCTGATGATATCGATTTCTCTGGGGCATCTGATGTTCATATTGACATTACAAAGTTGTGCGACATCCAACCTGAGTATCATCATGCAAATGTGAATCAACAACGAGTTACTCGATCACCTCGAAATATCATATTTAGAGGTAGGAAGTCTTACATTCGTGCTCCCACAAAGTTGGCTACTTCTGTGGCATATCCCTTTGCATTCATAAAACCCTCTGGAACCCATGGAGCTGTAACTCTGAAGGACATAAACCAGCGGATCCGCACACCGCCACCTTCAAAAGCTAAGCAAAAGGAGCCTGAACAATATCCCACTTCAGCCTTTTCTGGGAAACCTGTTGTTGGCAAAACTAAAATTCGAACTGAAGGAGGAAAAGGCAGCATTACAATAATGAGAACCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

34.43

Weight (kDa)

5.14

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48720 AT5G48720 AT5G48720 AT5G48720
fragaria_vesca	FvH4_2g18790 FvH4_2g18790 FvH4_2g18790 FvH4_2g18790
malus_domestica	MD05G1173900.v1.1 MD10G1161800.v1.1
prunus_persica	Prupe.8G201300_v2.0.a1 Prupe.8G201300_v2.0.a1
pyrus_communis	pycom05g16060 pycom10g13980
rosa_chinensis	RchiOBHm_Chr6g0284531
rosa_laevigata	RLG00000012740
rosa_roxburghii	Rroxscaffold_7G00184630
rosa_rugosa	Rorug06G0164000
rosa_samantha	Rh6AG277200 Rh6BG277100 Rh6CG279200 Rh6DG271600
rosa_wichuraiana	Rw6G023800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AciI	CCGC	4 cut(s)	43, 763, 769, 776
AclWI	GGATC	4 cut(s)	473, 479, 760, 773
AcsI	RAATTY	2 cut(s)	200, 861
AcuI	CTGAAG	4 cut(s)	315, 767, 807, 891
AcyI	GRCGYC	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	160, 834, 848
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	5 cut(s)	318, 346, 369, 383, 786
AhdI	GACNNNNNGTC	1 cut(s)	331
AluBI	AGCT	3 cut(s)	299, 737, 791
AluI	AGCT	3 cut(s)	299, 737, 791
Alw21I	GWGCWC	1 cut(s)	670
AlwI	GGATC	4 cut(s)	473, 479, 760, 773
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	885
ApoI	RAATTY	2 cut(s)	200, 861
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	444, 615
AsuII	TTCGAA	1 cut(s)	865
AvaII	GGWCC	1 cut(s)	121
BaeI	ACNNNNGTAYC	2 cut(s)	566, 599
BamHI	GGATCC	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	39
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	1 cut(s)	897
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	1 cut(s)	886
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	1 cut(s)	887
Bme18I	GGWCC	1 cut(s)	121
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	5 cut(s)	41, 231, 727, 767, 804
BmsI	GCATC	3 cut(s)	267, 428, 542
BpiI	GAAGAC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	792
Bpu14I	TTCGAA	1 cut(s)	865
Bsa29I	ATCGAT	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 834, 848
BseCI	ATCGAT	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	3 cut(s)	145, 282, 570
BseLI	CCNNNNNNNGG	3 cut(s)	160, 834, 848
BseMII	CTCAG	2 cut(s)	122, 570
BseXI	GCAGC	1 cut(s)	897
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	39
BshVI	ATCGAT	1 cut(s)	519
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	3 cut(s)	160, 834, 848
BsmI	GAATGC	4 cut(s)	92, 338, 443, 707
BsnI	GGCC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	865
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	4 cut(s)	465, 484, 620, 765
Bsp1720I	GCTNAGC	1 cut(s)	792
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	4 cut(s)	43, 763, 769, 776
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	121, 571
BspDI	ATCGAT	1 cut(s)	519
BspLI	GGNNCC	5 cut(s)	41, 231, 727, 767, 804
BspPI	GGATC	4 cut(s)	473, 479, 760, 773
BspQI	GCTCTTC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	865
BspT107I	GGYRCC	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	4 cut(s)	465, 484, 620, 765
BssNI	GRCGYC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	730
Bst4CI	ACNGT	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	865
BstDEI	CTNAG	3 cut(s)	108, 579, 792
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	3 cut(s)	145, 282, 570
BstKTI	GATC	4 cut(s)	468, 487, 623, 768
BstMBI	GATC	4 cut(s)	465, 484, 620, 765
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 802
BstNSI	RCATGY	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	897
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	765
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	765
Bsu15I	ATCGAT	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	145, 282, 570
BtsIMutI	CAGTG	3 cut(s)	291, 479, 480
Cfr13I	GGNCC	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	519
CseI	GACGC	1 cut(s)	260
CviAII	CATG	4 cut(s)	53, 133, 590, 731
DdeI	CTNAG	3 cut(s)	108, 579, 792
DpnI	GATC	4 cut(s)	467, 486, 622, 767
DpnII	GATC	4 cut(s)	465, 484, 620, 765
DriI	GACNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	231
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	730
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	4 cut(s)	315, 767, 807, 891
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	4 cut(s)	56, 136, 593, 734
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	4 cut(s)	52, 132, 589, 730
Fnu4HI	GCNGC	1 cut(s)	886
FokI	GGATG	3 cut(s)	152, 289, 557
Fsp4HI	GCNGC	1 cut(s)	886
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	1 cut(s)	886
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	4 cut(s)	56, 136, 593, 734
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	7 cut(s)	65, 112, 248, 305, 365, 449, 601
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	444, 615
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	7 cut(s)	85, 111, 214, 276, 412, 538, 747
Hpy188III	TCNNGA	4 cut(s)	74, 116, 343, 723
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	3 cut(s)	742, 792, 866
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4V	TGCA	5 cut(s)	338, 419, 499, 593, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 802
HpyF3I	CTNAG	3 cut(s)	108, 579, 792
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	56, 136, 593, 734
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	4 cut(s)	465, 484, 620, 765
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	3 cut(s)	673, 734, 802
Lsp1109I	GCAGC	1 cut(s)	897
LweI	GCATC	3 cut(s)	267, 428, 542
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	613, 739
MalI	GATC	4 cut(s)	467, 486, 622, 767
MboI	GATC	4 cut(s)	465, 484, 620, 765
MboII	GAAGA	3 cut(s)	248, 300, 335
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	765
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	5 cut(s)	200, 284, 369, 391, 861
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	3 cut(s)	117, 254, 598
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	2 cut(s)	159, 189
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	763
MspI	CCGG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	369
Mva1269I	GAATGC	4 cut(s)	92, 338, 443, 707
MwoI	GCNNNNNNNGC	2 cut(s)	277, 802
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	4 cut(s)	465, 484, 620, 765
NlaIII	CATG	4 cut(s)	56, 136, 593, 734
NlaIV	GGNNCC	5 cut(s)	41, 231, 727, 767, 804
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	865
PciI	ACATGT	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	616, 625
PctI	GAATGC	4 cut(s)	92, 338, 443, 707
PfeI	GAWTC	6 cut(s)	112, 248, 305, 365, 449, 601
PkrI	GCNGC	1 cut(s)	887
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	121
PscI	ACATGT	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	121
PspN4I	GGNNCC	5 cut(s)	41, 231, 727, 767, 804
PspPI	GGNCC	1 cut(s)	121
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	594
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	159, 189
SatI	GCNGC	1 cut(s)	886
Sau3AI	GATC	4 cut(s)	465, 484, 620, 765
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	3 cut(s)	267, 428, 542
SfuI	TTCGAA	1 cut(s)	865
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	594
Sse9I	AATT	5 cut(s)	200, 284, 369, 391, 861
SsiI	CCGC	4 cut(s)	43, 763, 769, 776
SspMI	CTAG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	474
TaqI	TCGA	5 cut(s)	468, 519, 619, 628, 865
TasI	AATT	5 cut(s)	200, 284, 369, 391, 861
TfiI	GAWTC	6 cut(s)	112, 248, 305, 365, 449, 601
Tru1I	TTAA	2 cut(s)	159, 189
Tru9I	TTAA	2 cut(s)	159, 189
TscAI	CASTG	3 cut(s)	298, 479, 487
TseI	GCWGC	1 cut(s)	885
TspDTI	ATGAA	6 cut(s)	117, 159, 450, 462, 533, 700
TspRI	CASTG	3 cut(s)	298, 479, 487
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	2 cut(s)	200, 861
XceI	RCATGY	1 cut(s)	136
XspI	CTAG	1 cut(s)	443
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.