Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Forward (+)

23343581 .. 23347014

Gene Structure 3434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0164000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGGCGTCCGCCGTCTTAGCGAATCGGAACGAACCCAATTGGCCACAGCAGCCCAGAGGCGGCGGCGGAGGCGGAGGATTCATGGGAAAAGTCCCTTTCTCAAACCCTAACCGTAACAACCCTAACCCTAAGACCAAATTCCAAGCTCCTCCTCATCATCATCATCATCATGCCGCCGATTTCAATGACGAGTCACCGGCCGTGACCCAGACGGCGTCCGACGACGCTTCGTCGATCAACCACCATCGGCGATCGAACACAACGAACACCGCCGCTGCCGATTTCAACCTCATTCAGTCCCAATACGTCAGCTTCAACATCGCGACCTATTCAAGAAAAGAGCTCGTCGAGCTCAAGAATCGCCTTCTCTCTGAGCTCGACCAGATTCGTGTGCTCAAGAATCGAATCGAAGCCGGCGACTTCAACCCCAGGCCGGCCCAGCCCAAAAAGCCCAGCACCACCAAGAAGATTGCCGGCTCGAAGCGGCCCTTGCCGATCGCCCCCGGCAAGGATTCGAACTCCAATTTGAAGCGATCGCATTCGGAGAATGTCAATTTGATGAAGAATTGTGGGCAGATTTTGTCCAAGCTGATGAAGCACAAGCACGCCTGGATCTTCAAAAAGCCTGTTGATGTGGTGACATTGAAGCTTCATGATTACTATGATATAATCAAGCACCCCATGGATCTGGGCACTGTCAAAATGAATCTATCCAAGAATTTGTATTCGACACCATTGGAATTCGCTGCTGATGTGCGATTGACCTTTGAAAATGCCATGCGGTATAATCCCCGAGGCCATGATGTCTACAACTACGCCAATCAGCTTCGCTCTTTGTTTGAGGAGCTCTTCCAGCCCCTGATTGACAAATTGGGGGATGGGTTTGGTGGGGATCGAGTAGCTTCCGATGAGGAGGAATTGCAGGCCAGTTCTTGGAACCATGTTGAGCCTGAGAGGCATCCTCCTCCGCCCAGGAGGGAAGACCCAATGCCCATGAAGATCGATAAGAAGACTGAGGTGGTTCGGCCCCCTCCGGCTCCAACCCCAGCTCCAGTCCCAGCCCCAGTGAGCTCATCAAATCCGCCATTAGCTAATTCTCCAGTGAGGACAAGTTCGCAAGTGAAGGGGCCGCCGCAAGTGAAGCCCTTGAAGCAGCCGAAGCCAAAAGCAAAGGACCCAAACAAGAGGGATATGAGCATGGAGGAGAAGCATAAGCTGGGACTTGGGTTGCAGAGCTTGCCTCAGGAGAAAATGGAGCAAGTTGTGCAGATTATTAGAAAGAGGAATGGGCATTTAAAGCAGGATGGGGATGAGATTGAGCTTGACATTGAGGCTGTCGATACAGAAACCCTTTGGGAGCTTGATCGGCTTGTTACAAATTATAAAAAGATGGTTAGCAAGATTAAGCGTCAAGCACTGATGGGCAACAACAGCAATAGCAACATTGCTTCTAACAGAGGAGGTCAAGAGGAATTGCCTGCTAGTGAGAAAATTGATGTCTCAGCAGCAGAGCCGAAGCGGCCAAAGAAAGGGGAAGTGGGAGATGAAGATGTAGATATTGGTGATGACATGCCAATGAGCAGCTTTCCTCCGGTTGAGATTGAGAAAGATGTTGGGGGCAATGCCAGTAGTGATAATAGTTCAAGCAGCTCCGGCAGTTCAAGCAGTGGCTCCTCCTCATCAAGCGATTCAGATTCTGGCAGTTCTTCAGGGAGTGACTCGGATGATGATAACGCGCAGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007140 GO:0007143 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009314 GO:0009555 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044703 GO:0046483 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048856 GO:0050896 GO:0051321 GO:0051704 GO:0051716 GO:0071704 GO:0071840 GO:0090304 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

581

Amino Acids

63.96

Weight (kDa)

7.81

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	190 - 274	9.4e-22	Bromodomain
BET	PF17035	398 - 459	1.2e-21	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1383
AccB7I	CCANNNNNTGG	1 cut(s)	933
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	2 cut(s)	323, 1736
AclWI	GGATC	3 cut(s)	620, 693, 900
AcoI	YGGCCR	3 cut(s)	41, 198, 1520
AcsI	RAATTY	3 cut(s)	137, 718, 740
AcuI	CTGAAG	1 cut(s)	1692
AcyI	GRCGYC	2 cut(s)	5, 215
AfiI	CCNNNNNNNGG	5 cut(s)	59, 433, 508, 933, 1529
AhdI	GACNNNNNGTC	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	428, 608, 971
Alw21I	GWGCWC	6 cut(s)	345, 354, 378, 396, 849, 1073
Alw26I	GTCTC	1 cut(s)	1504
AlwI	GGATC	3 cut(s)	620, 693, 900
AlwNI	CAGNNNCTG	2 cut(s)	859, 1697
Ama87I	CYCGRG	1 cut(s)	792
ApeKI	GCWGC	7 cut(s)	49, 275, 746, 1153, 1505, 1581, 1647
ApoI	RAATTY	3 cut(s)	137, 718, 740
AsiSI	GCGATCGC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	1738
AspS9I	GGNCC	5 cut(s)	436, 486, 1026, 1127, 1174
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	186, 649, 1574
AsuII	TTCGAA	1 cut(s)	515
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	1 cut(s)	1174
AxyI	CCTNAGG	1 cut(s)	1242
BaeGI	GKGCMC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	43
BanII	GRGCYC	5 cut(s)	345, 354, 378, 849, 1073
BbsI	GAAGAC	2 cut(s)	987, 1016
Bbv12I	GWGCWC	6 cut(s)	345, 354, 378, 396, 849, 1073
BbvI	GCAGC	7 cut(s)	61, 262, 733, 1165, 1517, 1593, 1659
BccI	CCATC	5 cut(s)	252, 872, 1298, 1384, 1414
BceAI	ACGGC	2 cut(s)	185, 228
BciT130I	CCWGG	3 cut(s)	430, 610, 973
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	1504
BfaI	CTAG	2 cut(s)	1482, 1744
BglI	GCCNNNNNGGC	2 cut(s)	955, 1519
Bme1390I	CCNGG	4 cut(s)	430, 504, 610, 973
Bme18I	GGWCC	1 cut(s)	1174
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	792
BmgT120I	GGNCC	5 cut(s)	436, 486, 1026, 1127, 1174
BmiI	GGNNCC	6 cut(s)	938, 1028, 1038, 1128, 1176, 1672
BmrFI	CCNGG	4 cut(s)	430, 504, 610, 973
BmrI	ACTGGG	1 cut(s)	1058
BmsI	GCATC	1 cut(s)	967
BmuI	ACTGGG	1 cut(s)	1058
BpiI	GAAGAC	2 cut(s)	987, 1016
BplI	GAGNNNNNCTC	4 cut(s)	946, 978, 1225, 1257
BpmI	CTGGAG	2 cut(s)	1035, 1083
Bpu14I	TTCGAA	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	338, 380
BpuMI	CCSGG	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	1002
BsaHI	GRCGYC	2 cut(s)	5, 215
BsaJI	CCNNGG	5 cut(s)	428, 502, 681, 793, 971
BsaWI	WCCGGW	1 cut(s)	1591
BsaXI	ACNNNNNCTCC	2 cut(s)	1033, 1063
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 433, 508, 933, 1529
Bse118I	RCCGGY	4 cut(s)	196, 413, 433, 473
Bse1I	ACTGG	5 cut(s)	927, 1052, 1064, 1100, 1626
Bse21I	CCTNAGG	1 cut(s)	1242
Bse3DI	GCAATG	2 cut(s)	1443, 1627
BseBI	CCWGG	3 cut(s)	430, 610, 973
BseCI	ATCGAT	1 cut(s)	1002
BseDI	CCNNGG	5 cut(s)	428, 502, 681, 793, 971
BseGI	GGATG	5 cut(s)	883, 958, 1309, 1315, 1729
BseLI	CCNNNNNNNGG	5 cut(s)	59, 433, 508, 933, 1529
BseMI	GCAATG	2 cut(s)	1443, 1627
BseMII	CTCAG	5 cut(s)	363, 942, 1005, 1256, 1515
BseNI	ACTGG	5 cut(s)	927, 1052, 1064, 1100, 1626
BseRI	GAGGAG	9 cut(s)	138, 141, 857, 926, 954, 1217, 1473, 1663, 1666
BseSI	GKGCMC	1 cut(s)	695
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	7 cut(s)	61, 262, 733, 1165, 1517, 1593, 1659
BseYI	CCCAGC	5 cut(s)	438, 452, 1045, 1057, 1216
BsgI	GTGCAG	1 cut(s)	1286
Bsh1236I	CGCG	2 cut(s)	323, 1736
Bsh1285I	CGRYCG	4 cut(s)	201, 254, 498, 536
BshVI	ATCGAT	1 cut(s)	1002
BsiEI	CGRYCG	4 cut(s)	201, 254, 498, 536
BsiHKAI	GWGCWC	6 cut(s)	345, 354, 378, 396, 849, 1073
BsiHKCI	CYCGRG	1 cut(s)	792
BsiSI	CCGG	8 cut(s)	197, 414, 434, 474, 504, 1034, 1592, 1653
BslFI	GGGAC	4 cut(s)	77, 283, 1040, 1233
BslI	CCNNNNNNNGG	5 cut(s)	59, 433, 508, 933, 1529
BsmAI	GTCTC	1 cut(s)	1504
BsmFI	GGGAC	4 cut(s)	77, 283, 1040, 1233
BsmI	GAATGC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	792
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	7 cut(s)	345, 354, 378, 396, 695, 849, 1073
Bsp143I	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
Bsp19I	CCATGG	1 cut(s)	681
Bsp68I	TCGCGA	1 cut(s)	323
BspCNI	CTCAG	5 cut(s)	364, 943, 1006, 1255, 1514
BspDI	ATCGAT	1 cut(s)	1002
BspFNI	CGCG	2 cut(s)	323, 1736
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	6 cut(s)	938, 1028, 1038, 1128, 1176, 1672
BspPI	GGATC	3 cut(s)	620, 693, 900
BspQI	GCTCTTC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	1443, 1627
BsrFI	RCCGGY	4 cut(s)	196, 413, 433, 473
BsrI	ACTGG	5 cut(s)	927, 1052, 1064, 1100, 1626
BssAI	RCCGGY	4 cut(s)	196, 413, 433, 473
BssECI	CCNNGG	5 cut(s)	428, 502, 681, 793, 971
BssMI	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
BssNI	GRCGYC	2 cut(s)	5, 215
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	3 cut(s)	430, 610, 973
Bst4CI	ACNGT	2 cut(s)	113, 697
Bst6I	CTCTTC	1 cut(s)	854
BstACI	GRCGYC	2 cut(s)	5, 215
BstAPI	GCANNNNNTGC	2 cut(s)	1237, 1264
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	7 cut(s)	415, 435, 475, 606, 924, 1238, 1479
BstDEI	CTNAG	7 cut(s)	16, 129, 372, 951, 1014, 1242, 1501
BstDSI	CCRYGG	1 cut(s)	681
BstF5I	GGATG	5 cut(s)	883, 958, 1309, 1315, 1729
BstFNI	CGCG	2 cut(s)	323, 1736
BstHHI	GCGC	1 cut(s)	1738
BstKTI	GATC	9 cut(s)	237, 254, 498, 536, 615, 688, 895, 1002, 1366
BstMAI	GTCTC	1 cut(s)	1504
BstMBI	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
BstMCI	CGRYCG	4 cut(s)	201, 254, 498, 536
BstNI	CCWGG	3 cut(s)	430, 610, 973
BstNSI	RCATGY	1 cut(s)	1573
BstSCI	CCNGG	4 cut(s)	428, 502, 608, 971
BstSLI	GKGCMC	1 cut(s)	695
BstUI	CGCG	2 cut(s)	323, 1736
BstV1I	GCAGC	7 cut(s)	61, 262, 733, 1165, 1517, 1593, 1659
BstV2I	GAAGAC	2 cut(s)	987, 1016
BstX2I	RGATCY	2 cut(s)	612, 685
BstXI	CCANNNNNNTGG	1 cut(s)	688
BstYI	RGATCY	2 cut(s)	612, 685
BstZI	CGGCCG	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	1002
Bsu36I	CCTNAGG	1 cut(s)	1242
BsuTUI	ATCGAT	1 cut(s)	1002
BtgI	CCRYGG	1 cut(s)	681
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	5 cut(s)	883, 958, 1309, 1315, 1729
BtsI	GCAGTG	1 cut(s)	1672
BtsIMutI	CAGTG	5 cut(s)	693, 1071, 1107, 1415, 1672
BtuMI	TCGCGA	1 cut(s)	323
Cac8I	GCNNGC	7 cut(s)	415, 435, 475, 606, 924, 1238, 1479
CaiI	CAGNNNCTG	2 cut(s)	859, 1697
CciI	TCATGA	1 cut(s)	652
CfoI	GCGC	1 cut(s)	1738
Cfr10I	RCCGGY	4 cut(s)	196, 413, 433, 473
Cfr13I	GGNCC	5 cut(s)	436, 486, 1026, 1127, 1174
ClaI	ATCGAT	1 cut(s)	1002
CseI	GACGC	3 cut(s)	204, 233, 1397
DdeI	CTNAG	7 cut(s)	16, 129, 372, 951, 1014, 1242, 1501
DpnI	GATC	9 cut(s)	236, 253, 497, 535, 614, 687, 894, 1001, 1365
DpnII	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
DraI	TTTAAA	1 cut(s)	1296
DriI	GACNNNNNGTC	1 cut(s)	229
EaeI	YGGCCR	3 cut(s)	41, 198, 1520
EagI	CGGCCG	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	854
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	854
EciI	GGCGGA	4 cut(s)	81, 87, 957, 1071
Ecl136II	GAGCTC	5 cut(s)	343, 352, 376, 847, 1071
EclXI	CGGCCG	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	681
Eco24I	GRGCYC	5 cut(s)	345, 354, 378, 849, 1073
Eco47I	GGWCC	1 cut(s)	1174
Eco52I	CGGCCG	1 cut(s)	198
Eco53kI	GAGCTC	5 cut(s)	343, 352, 376, 847, 1071
Eco57I	CTGAAG	1 cut(s)	1692
Eco81I	CCTNAGG	1 cut(s)	1242
Eco88I	CYCGRG	1 cut(s)	792
EcoICRI	GAGCTC	5 cut(s)	343, 352, 376, 847, 1071
EcoO109I	RGGNCCY	1 cut(s)	1174
EcoRI	GAATTC	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	428, 608, 971
EcoT14I	CCWWGG	1 cut(s)	681
EcoT38I	GRGCYC	5 cut(s)	345, 354, 378, 849, 1073
ErhI	CCWWGG	1 cut(s)	681
FalI	AAGNNNNNCTT	2 cut(s)	473, 505
FaqI	GGGAC	4 cut(s)	77, 283, 1040, 1233
FblI	GTMKAC	1 cut(s)	807
FokI	GGATG	5 cut(s)	890, 945, 1316, 1322, 1736
FriOI	GRGCYC	5 cut(s)	345, 354, 378, 849, 1073
FseI	GGCCGGCC	1 cut(s)	437
FspBI	CTAG	2 cut(s)	1482, 1744
GlaI	GCGC	1 cut(s)	1737
GsaI	CCCAGC	5 cut(s)	442, 456, 1049, 1061, 1220
GsuI	CTGGAG	2 cut(s)	1035, 1083
HapII	CCGG	8 cut(s)	197, 414, 434, 474, 504, 1034, 1592, 1653
HgaI	GACGC	3 cut(s)	204, 233, 1397
HhaI	GCGC	1 cut(s)	1738
Hin1I	GRCGYC	2 cut(s)	5, 215
Hin6I	GCGC	1 cut(s)	1736
HinP1I	GCGC	1 cut(s)	1736
HindIII	AAGCTT	1 cut(s)	647
HpaII	CCGG	8 cut(s)	197, 414, 434, 474, 504, 1034, 1592, 1653
HphI	GGTGA	3 cut(s)	186, 649, 1574
Hpy166II	GTNNAC	1 cut(s)	808
Hpy188I	TCNGA	7 cut(s)	27, 220, 373, 544, 907, 1693, 1723
Hpy188III	TCNNGA	7 cut(s)	322, 333, 355, 397, 653, 1244, 1466
Hpy8I	GTNNAC	1 cut(s)	808
Hpy99I	CGWCG	4 cut(s)	224, 227, 235, 350
HpyAV	CCTTC	2 cut(s)	374, 1117
HpyCH4III	ACNGT	2 cut(s)	113, 697
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	922, 1231, 1267
HpyF3I	CTNAG	7 cut(s)	16, 129, 372, 951, 1014, 1242, 1501
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	2 cut(s)	5, 215
HspAI	GCGC	1 cut(s)	1736
KroI	GCCGGC	3 cut(s)	413, 433, 473
KroNI	GCCGGC	3 cut(s)	415, 435, 475
Kzo9I	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	8 cut(s)	151, 844, 1042, 1054, 1255, 1357, 1655, 1676
Lsp1109I	GCAGC	7 cut(s)	61, 262, 733, 1165, 1517, 1593, 1659
LweI	GCATC	1 cut(s)	967
MaeI	CTAG	2 cut(s)	1482, 1744
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	6 cut(s)	113, 192, 202, 637, 1372, 1715
MalI	GATC	9 cut(s)	236, 253, 497, 535, 614, 687, 894, 1001, 1365
MboI	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
MboII	GAAGA	9 cut(s)	478, 574, 607, 841, 992, 1009, 1021, 1559, 1698
MfeI	CAATTG	1 cut(s)	37
MflI	RGATCY	2 cut(s)	612, 685
MhlI	GDGCHC	7 cut(s)	345, 354, 378, 396, 695, 849, 1073
MlsI	TGGCCA	1 cut(s)	43
MluNI	TGGCCA	1 cut(s)	43
MlyI	GAGTC	2 cut(s)	200, 1712
MmeI	TCCRAC	2 cut(s)	243, 1064
Mox20I	TGGCCA	1 cut(s)	43
MroNI	GCCGGC	3 cut(s)	413, 433, 473
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	2 cut(s)	1295, 1404
MslI	CAYNNNNRTG	2 cut(s)	168, 1574
Msp20I	TGGCCA	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	8 cut(s)	197, 414, 434, 474, 504, 1034, 1592, 1653
MspR9I	CCNGG	4 cut(s)	430, 504, 610, 973
MunI	CAATTG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	3 cut(s)	430, 610, 973
MvnI	CGCG	2 cut(s)	323, 1736
NaeI	GCCGGC	3 cut(s)	415, 435, 475
NciI	CCSGG	1 cut(s)	504
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
NgoMIV	GCCGGC	3 cut(s)	413, 433, 473
NlaIV	GGNNCC	6 cut(s)	938, 1028, 1038, 1128, 1176, 1672
NmuCI	GTSAC	4 cut(s)	192, 202, 637, 1715
NruI	TCGCGA	1 cut(s)	323
NspI	RCATGY	1 cut(s)	1573
NspV	TTCGAA	1 cut(s)	515
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	2 cut(s)	260, 414
PctI	GAATGC	1 cut(s)	538
PdiI	GCCGGC	3 cut(s)	415, 435, 475
PflFI	GACNNNGTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	933
Ple19I	CGATCG	3 cut(s)	254, 498, 536
PleI	GAGTC	2 cut(s)	199, 1712
PpsI	GAGTC	2 cut(s)	199, 1712
PpuMI	RGGWCCY	1 cut(s)	1174
PsiI	TTATAA	1 cut(s)	1383
Psp124BI	GAGCTC	5 cut(s)	345, 354, 378, 849, 1073
Psp5II	RGGWCCY	1 cut(s)	1174
Psp6I	CCWGG	3 cut(s)	428, 608, 971
PspFI	CCCAGC	5 cut(s)	438, 452, 1045, 1057, 1216
PspGI	CCWGG	3 cut(s)	428, 608, 971
PspN4I	GGNNCC	6 cut(s)	938, 1028, 1038, 1128, 1176, 1672
PspPI	GGNCC	5 cut(s)	436, 486, 1026, 1127, 1174
PspPPI	RGGWCCY	1 cut(s)	1174
PstNI	CAGNNNCTG	2 cut(s)	859, 1697
PsuI	RGATCY	2 cut(s)	612, 685
PsyI	GACNNNGTC	1 cut(s)	214
PvuI	CGATCG	3 cut(s)	254, 498, 536
RgaI	GCGATCGC	1 cut(s)	536
RigI	GGCCGGCC	1 cut(s)	437
RruI	TCGCGA	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	168, 1574
SacI	GAGCTC	5 cut(s)	345, 354, 378, 849, 1073
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	2 cut(s)	1295, 1404
Sau3AI	GATC	9 cut(s)	234, 251, 495, 533, 612, 685, 892, 999, 1363
Sau96I	GGNCC	5 cut(s)	436, 486, 1026, 1127, 1174
SchI	GAGTC	2 cut(s)	200, 1712
ScrFI	CCNGG	4 cut(s)	430, 504, 610, 973
SduI	GDGCHC	7 cut(s)	345, 354, 378, 396, 695, 849, 1073
SfaAI	GCGATCGC	1 cut(s)	536
SfaNI	GCATC	1 cut(s)	967
SfuI	TTCGAA	1 cut(s)	515
SgfI	GCGATCGC	1 cut(s)	536
SinI	GGWCC	1 cut(s)	1174
SmiMI	CAYNNNNRTG	2 cut(s)	168, 1574
SmlI	CTYRAG	2 cut(s)	353, 395
SmoI	CTYRAG	2 cut(s)	353, 395
SspMI	CTAG	2 cut(s)	1482, 1744
SstI	GAGCTC	5 cut(s)	345, 354, 378, 849, 1073
StyD4I	CCNGG	4 cut(s)	428, 502, 608, 971
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	113, 697
TaiI	ACGT	1 cut(s)	309
TauI	GCSGC	8 cut(s)	63, 66, 176, 275, 487, 1132, 1135, 1522
Tru1I	TTAA	2 cut(s)	1295, 1404
Tru9I	TTAA	2 cut(s)	1295, 1404
TscAI	CASTG	5 cut(s)	700, 1071, 1107, 1422, 1672
TseFI	GTSAC	4 cut(s)	192, 202, 637, 1715
TseI	GCWGC	7 cut(s)	49, 275, 746, 1153, 1505, 1581, 1647
Tsp45I	GTSAC	4 cut(s)	192, 202, 637, 1715
TspDTI	ATGAA	7 cut(s)	70, 575, 608, 641, 719, 1010, 1560
TspRI	CASTG	5 cut(s)	700, 1071, 1107, 1422, 1672
Tth111I	GACNNNGTC	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	933
VpaK11BI	GGWCC	1 cut(s)	1174
XapI	RAATTY	3 cut(s)	137, 718, 740
XceI	RCATGY	1 cut(s)	1573
XmiI	GTMKAC	1 cut(s)	807
XspI	CTAG	2 cut(s)	1482, 1744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.