RchiOBHm_Chr1g0383971

ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001878
Physical Location & Seq
Forward (+)
68067374 .. 68070326
2953 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60685

Sequence Viewer

Length: 648 bp
ATGAATCTGTTTAGGTTGGCAGGAGACATGACCCACCTCCTGGGCATACTGGTTCTGTTCCTTAAGATTCACACCACCAAATCTTGTGCAGGGATTTCCCTCAAAACTCAAGAACTGTATGTGTTGGTGTTTCTCACCCGATACATGGACCTGATTGTGAAGTATTACTCTTTGTATAACACATTAGCCAAGCTCCTCTTCATCGGAACTTCTTTCGCCACGGCCTGGTACATGAGGTACCATAAAGTAGTGAAGCAAACATACAACAAGGATCAAGATACTTTCAGACACTACTATCTGATCCTTGTTTGCTTTGTGTTGGCTCTTCTGATTCCCCATGATTTTACTGTAATTCAAGTGTTGTGGACATTTTCAATATACCTTGAAGCTGTTGCAATCTTACCGCAATTGGTACTACTTCAAAGTTCAAGAAACATTGACAACCTAACTGGAAACTACGTTTTTCTTCTTGGTACCTATCGAGCCCTATATCTTCTCAACTGGATCTATCGTTTCTTCACAGAGCTGCACAGAGTTCGCTGGATACCTTGGATCTCAGGCCTAGTTCAGACTGCTCTTTATGCCGACTTTTTCTACTATTATATCAAGAGCTGGAAGAAGCATGAAGAGCTAAAGCTTCCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05110 map05110
Pfam Domains
Protein Families
ER_lumen_recept

Protein Analysis

215

Amino Acids

25.6

Weight (kDa)

9.43

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 28 - 171 5.7e-56 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 237, 473
AccB1I GGYRCC 2 cut(s) 237, 473
AccB7I CCANNNNNTGG 2 cut(s) 40, 225
AciI CCGC 1 cut(s) 404
AclWI GGATC 4 cut(s) 279, 295, 512, 560
AfaI GTAC 4 cut(s) 230, 239, 414, 475
AfiI CCNNNNNNNGG 3 cut(s) 40, 145, 225
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 5 cut(s) 356, 375, 386, 422, 429
AjnI CCWGG 2 cut(s) 39, 224
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 6 cut(s) 193, 389, 526, 612, 631, 637
AluI AGCT 6 cut(s) 193, 389, 526, 612, 631, 637
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 4 cut(s) 279, 295, 512, 560
AoxI GGCC 2 cut(s) 222, 559
ApeKI GCWGC 1 cut(s) 526
Asp718I GGTACC 2 cut(s) 237, 473
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 1 cut(s) 148
BanI GGYRCC 2 cut(s) 237, 473
BanII GRGCYC 1 cut(s) 487
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BbvI GCAGC 1 cut(s) 513
BceAI ACGGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 41, 226
BciVI GTATCC 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 563
BfrI CTTAAG 1 cut(s) 62
BfuI GTATCC 1 cut(s) 537
BisI GCNGC 1 cut(s) 527
BlsI GCNGC 1 cut(s) 528
Bme1390I CCNGG 2 cut(s) 41, 226
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 2 cut(s) 239, 475
BmrFI CCNGG 2 cut(s) 41, 226
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 3 cut(s) 40, 219, 548
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 145, 225
Bse1I ACTGG 3 cut(s) 54, 454, 506
BseBI CCWGG 2 cut(s) 41, 226
BseDI CCNNGG 3 cut(s) 40, 219, 548
BseLI CCNNNNNNNGG 3 cut(s) 40, 145, 225
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 3 cut(s) 54, 454, 506
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 513
BsgI GTGCAG 2 cut(s) 108, 512
BshFI GGCC 2 cut(s) 224, 561
BshNI GGYRCC 2 cut(s) 237, 473
BslI CCNNNNNNNGG 3 cut(s) 40, 145, 225
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 2 cut(s) 224, 561
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 4 cut(s) 271, 300, 504, 552
BspACI CCGC 1 cut(s) 404
BspANI GGCC 2 cut(s) 224, 561
BspCNI CTCAG 1 cut(s) 569
BspLI GGNNCC 2 cut(s) 239, 475
BspPI GGATC 4 cut(s) 279, 295, 512, 560
BspQI GCTCTTC 2 cut(s) 330, 621
BspT107I GGYRCC 2 cut(s) 237, 473
BspTI CTTAAG 1 cut(s) 62
BsrI ACTGG 3 cut(s) 54, 454, 506
BssECI CCNNGG 3 cut(s) 40, 219, 548
BssMI GATC 4 cut(s) 271, 300, 504, 552
BssT1I CCWWGG 1 cut(s) 548
Bst2UI CCWGG 2 cut(s) 41, 226
Bst4CI ACNGT 2 cut(s) 117, 349
Bst6I CTCTTC 3 cut(s) 203, 330, 621
BstAFI CTTAAG 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 556
BstDSI CCRYGG 1 cut(s) 219
BstKTI GATC 4 cut(s) 274, 303, 507, 555
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 4 cut(s) 271, 300, 504, 552
BstMWI GCNNNNNNNGC 2 cut(s) 581, 628
BstNI CCWGG 2 cut(s) 41, 226
BstSCI CCNGG 2 cut(s) 39, 224
BstV1I GCAGC 1 cut(s) 513
BstX2I RGATCY 2 cut(s) 504, 552
BstYI RGATCY 2 cut(s) 504, 552
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 2 cut(s) 224, 561
BtgI CCRYGG 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 4 cut(s) 229, 238, 413, 474
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviAII CATG 5 cut(s) 28, 145, 232, 338, 623
CviQI GTAC 4 cut(s) 229, 238, 413, 474
DdeI CTNAG 1 cut(s) 556
DpnI GATC 4 cut(s) 273, 302, 506, 554
DpnII GATC 4 cut(s) 271, 300, 504, 552
Eam1104I CTCTTC 3 cut(s) 203, 330, 621
EarI CTCTTC 3 cut(s) 203, 330, 621
Eco130I CCWWGG 1 cut(s) 548
Eco147I AGGCCT 1 cut(s) 561
Eco24I GRGCYC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 39, 224
EcoT14I CCWWGG 1 cut(s) 548
EcoT38I GRGCYC 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 5 cut(s) 31, 148, 235, 341, 626
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 5 cut(s) 27, 144, 231, 337, 622
Fnu4HI GCNGC 1 cut(s) 527
FriOI GRGCYC 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 527
FspBI CTAG 1 cut(s) 563
GluI GCNGC 1 cut(s) 527
HaeIII GGCC 2 cut(s) 224, 561
Hin1II CATG 5 cut(s) 31, 148, 235, 341, 626
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 3 cut(s) 4, 67, 331
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 366
Hpy188I TCNGA 5 cut(s) 206, 287, 300, 330, 570
Hpy188III TCNNGA 4 cut(s) 110, 275, 429, 607
Hpy8I GTNNAC 1 cut(s) 366
HpyCH4III ACNGT 2 cut(s) 117, 349
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 89, 395, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 628
HpyF3I CTNAG 1 cut(s) 556
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 5 cut(s) 31, 148, 235, 341, 626
KpnI GGTACC 2 cut(s) 241, 477
Kzo9I GATC 4 cut(s) 271, 300, 504, 552
LguI GCTCTTC 2 cut(s) 330, 621
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 1 cut(s) 513
MaeI CTAG 1 cut(s) 563
MaeII ACGT 1 cut(s) 459
MalI GATC 4 cut(s) 273, 302, 506, 554
MboI GATC 4 cut(s) 271, 300, 504, 552
MboII GAAGA 7 cut(s) 190, 317, 458, 485, 508, 628, 638
MfeI CAATTG 1 cut(s) 407
MflI RGATCY 2 cut(s) 504, 552
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 2 cut(s) 351, 407
MnlI CCTC 4 cut(s) 47, 110, 206, 228
MseI TTAA 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 41, 226
MunI CAATTG 1 cut(s) 407
MvaI CCWGG 2 cut(s) 41, 226
MwoI GCNNNNNNNGC 2 cut(s) 581, 628
NdeII GATC 4 cut(s) 271, 300, 504, 552
NlaIII CATG 5 cut(s) 31, 148, 235, 341, 626
NlaIV GGNNCC 2 cut(s) 239, 475
PceI AGGCCT 1 cut(s) 561
PciSI GCTCTTC 2 cut(s) 330, 621
PfeI GAWTC 3 cut(s) 4, 67, 331
PflMI CCANNNNNTGG 2 cut(s) 40, 225
PkrI GCNGC 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 39, 224
PspGI CCWGG 2 cut(s) 39, 224
PspN4I GGNNCC 2 cut(s) 239, 475
PspPI GGNCC 1 cut(s) 148
PsuI RGATCY 2 cut(s) 504, 552
RsaI GTAC 4 cut(s) 230, 239, 414, 475
RsaNI GTAC 4 cut(s) 229, 238, 413, 474
SapI GCTCTTC 2 cut(s) 330, 621
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 527
Sau3AI GATC 4 cut(s) 271, 300, 504, 552
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 41, 226
SduI GDGCHC 1 cut(s) 487
SinI GGWCC 1 cut(s) 148
SmlI CTYRAG 2 cut(s) 62, 108
SmoI CTYRAG 2 cut(s) 62, 108
Sse9I AATT 2 cut(s) 351, 407
SseBI AGGCCT 1 cut(s) 561
SsiI CCGC 1 cut(s) 404
SspMI CTAG 1 cut(s) 563
StuI AGGCCT 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 39, 224
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 2 cut(s) 117, 349
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 481
TasI AATT 2 cut(s) 351, 407
TfiI GAWTC 3 cut(s) 4, 67, 331
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseI GCWGC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 17, 190, 639
Van91I CCANNNNNTGG 2 cut(s) 40, 225
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 1 cut(s) 148
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.