Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003611.1

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

50628 .. 55775

Gene Structure 5148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003611.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgacgcatttggccagtgttctggttttgcttctcaagatccacactatcaagtcatgtgctggcgtgtccttgaagactcaggaactctatgctcttgtctttgctacccgctatttggatatttttgttagcttctactcagtttataataccttgatgaagttgatattcttgggtagctctttctcaattgtttggtatatacggcaccacaggattgttcgtagatcatatgataaagaccaagacacatttcgccatctttttctgttactcccatgcctacttttggccctggtcatcaatgagaaattcacttttagagaggtgatgtgggctttttccatatatttggaagcagtcgccatacttcctcagctggtgctgttgcaaaggacaagaaatattgacaacctaacagggcaatatgtagtcctcctcggggcctatcgagcattgtacatattgaactggatttaccgctactttactgaggatcactatgtccactggataacttgggtagcagggataatccagaccttactctatgctgatttcttctactattacttccagagttggaagaacaatgtaaagcttgagctgccagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

206

Amino Acids

24.56

Weight (kDa)

9.24

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	210
AciI	CCGC	2 cut(s)	112, 484
AclWI	GGATC	2 cut(s)	34, 507
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	118, 292, 445
AgsI	TTSAA	2 cut(s)	76, 472
AjnI	CCWGG	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	6 cut(s)	135, 183, 382, 604, 610, 617
AluI	AGCT	6 cut(s)	135, 183, 382, 604, 610, 617
AlwI	GGATC	2 cut(s)	34, 507
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	3 cut(s)	12, 294, 447
ApeKI	GCWGC	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	295, 447
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	2 cut(s)	295, 447
BmiI	GGNNCC	2 cut(s)	212, 448
BmrFI	CCNGG	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	297, 442
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 292, 445
Bse1I	ACTGG	3 cut(s)	15, 479, 518
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	2 cut(s)	297, 442
BseLI	CCNNNNNNNGG	3 cut(s)	118, 292, 445
BseMII	CTCAG	4 cut(s)	95, 156, 392, 486
BseNI	ACTGG	3 cut(s)	15, 479, 518
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	597
BshFI	GGCC	3 cut(s)	14, 296, 449
BshNI	GGYRCC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	118, 292, 445
BsnI	GGCC	3 cut(s)	14, 296, 449
BsoBI	CYCGRG	1 cut(s)	443
Bsp1407I	TGTACA	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	39, 230, 499
BspACI	CCGC	2 cut(s)	112, 484
BspANI	GGCC	3 cut(s)	14, 296, 449
BspCNI	CTCAG	4 cut(s)	94, 155, 391, 487
BspLI	GGNNCC	2 cut(s)	212, 448
BspPI	GGATC	2 cut(s)	34, 507
BspT107I	GGYRCC	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	15, 479, 518
BssECI	CCNNGG	2 cut(s)	297, 442
BssMI	GATC	3 cut(s)	39, 230, 499
Bst2UI	CCWGG	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	64, 615
BstDEI	CTNAG	4 cut(s)	81, 142, 378, 495
BstKTI	GATC	3 cut(s)	42, 233, 502
BstMBI	GATC	3 cut(s)	39, 230, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 610
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	2 cut(s)	22, 355
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	14, 296, 449
BtsIMutI	CAGTG	2 cut(s)	22, 511
Cac8I	GCNNGC	2 cut(s)	64, 615
Cfr13I	GGNCC	2 cut(s)	295, 447
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	2 cut(s)	57, 282
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	4 cut(s)	81, 142, 378, 495
DpnI	GATC	3 cut(s)	41, 232, 501
DpnII	GATC	3 cut(s)	39, 230, 499
EaeI	YGGCCR	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	60, 285
FatI	CATG	2 cut(s)	56, 281
FauI	CCCGC	1 cut(s)	119
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	611
Fsp4HI	GCNGC	1 cut(s)	611
GluI	GCNGC	1 cut(s)	611
HaeIII	GGCC	3 cut(s)	14, 296, 449
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	60, 285
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188III	TCNNGA	4 cut(s)	37, 83, 541, 580
Hpy8I	GTNNAC	1 cut(s)	511
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 610
HpyF3I	CTNAG	4 cut(s)	81, 142, 378, 495
Hsp92II	CATG	2 cut(s)	60, 285
Kzo9I	GATC	3 cut(s)	39, 230, 499
Lsp1109I	GCAGC	1 cut(s)	597
MaeIII	GTNAC	1 cut(s)	273
MalI	GATC	3 cut(s)	41, 232, 501
MboI	GATC	3 cut(s)	39, 230, 499
MboII	GAAGA	3 cut(s)	88, 556, 601
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	2 cut(s)	192, 314
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	5 cut(s)	322, 387, 449, 452, 490
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	455, 610
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	3 cut(s)	39, 230, 499
NlaIII	CATG	2 cut(s)	60, 285
NlaIV	GGNNCC	2 cut(s)	212, 448
PkrI	GCNGC	1 cut(s)	612
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	212, 448
PspPI	GGNCC	2 cut(s)	295, 447
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SatI	GCNGC	1 cut(s)	611
Sau3AI	GATC	3 cut(s)	39, 230, 499
Sau96I	GGNCC	2 cut(s)	295, 447
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	35, 605
SmoI	CTYRAG	2 cut(s)	35, 605
Sse9I	AATT	2 cut(s)	192, 314
SsiI	CCGC	2 cut(s)	112, 484
SspI	AATATT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	297
TaqI	TCGA	1 cut(s)	454
TasI	AATT	2 cut(s)	192, 314
TatI	WGTACW	1 cut(s)	462
TscAI	CASTG	2 cut(s)	22, 518
TseI	GCWGC	1 cut(s)	610
TspDTI	ATGAA	1 cut(s)	176
TspRI	CASTG	2 cut(s)	22, 518
XapI	RAATTY	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.