Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

390713 .. 393100

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATCTGTTTAGGTTGGCAGGAGACATGACCCACCTCCTGGGCATACTGGTTCTGTTCCTTAAGATTCACACCACCAAATCTTGTGCAGGGATTTCCCTCAAAACTCAAGAACTGTATGTGTTGGTGTTTCTCACCCGGTACATGGACTTGATTGGGAAGTATTACTCTCTGTATAACACATTAGCCAAGCTCATCTTCATCGGAACTTCTTTCGCCACGGCCTGGTACATGAGGTACCATAAAGTAGTGAAGCAAACATACAACAAGGATGAAGATACTTTCAGACACTACTATCTGATCCTTGTTTGCTTTGTGTTGGCTCTTCTGATTCCCCATGATTTTACTGTAATTCAAGTGTTGTGGACATTTTCAATCTACCTTGAAGCTGTTGCAATCTTACCGCAATTGGTACTACTTCAACGTTCAAGAAACATTGACAACCTAACTGGAAACTACGTTTTTCTTCTTGGTACTTATCGAGCCCTATATCTTCTCAATTGGATCTATCGTTTCTTCACAGAGCTGCACAGAGTTCTCTGGATACCTTGGATCTCAGGCCTAGTTCAGACTGCTCTTTACGCCGACTTTTTCTACTATTATATCAAGAGCTGGAAGAAGCATGAAGAGCTTAAGCTTCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

216

Amino Acids

25.59

Weight (kDa)

9.34

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	28 - 171	7.5e-57	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AccB7I	CCANNNNNTGG	2 cut(s)	40, 225
AciI	CCGC	1 cut(s)	404
AclI	AACGTT	1 cut(s)	424
AclWI	GGATC	3 cut(s)	295, 512, 560
AfaI	GTAC	5 cut(s)	143, 230, 239, 414, 475
AfiI	CCNNNNNNNGG	3 cut(s)	40, 145, 225
AflII	CTTAAG	2 cut(s)	62, 632
AgsI	TTSAA	5 cut(s)	356, 375, 386, 422, 429
AjnI	CCWGG	2 cut(s)	39, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AluBI	AGCT	6 cut(s)	193, 389, 526, 612, 631, 637
AluI	AGCT	6 cut(s)	193, 389, 526, 612, 631, 637
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	295, 512, 560
AoxI	GGCC	2 cut(s)	222, 559
ApeKI	GCWGC	1 cut(s)	526
Asp718I	GGTACC	1 cut(s)	237
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbvI	GCAGC	1 cut(s)	513
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	2 cut(s)	41, 226
BciVI	GTATCC	1 cut(s)	537
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	563
BfrI	CTTAAG	2 cut(s)	62, 632
BfuI	GTATCC	1 cut(s)	537
BisI	GCNGC	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	528
Bme1390I	CCNGG	3 cut(s)	41, 139, 226
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	41, 139, 226
BpuEI	CTTGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	40, 219, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 145, 225
Bse1I	ACTGG	2 cut(s)	54, 454
BseBI	CCWGG	2 cut(s)	41, 226
BseDI	CCNNGG	3 cut(s)	40, 219, 548
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	3 cut(s)	40, 145, 225
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	54, 454
BseXI	GCAGC	1 cut(s)	513
BsgI	GTGCAG	2 cut(s)	108, 512
BshFI	GGCC	2 cut(s)	224, 561
BshNI	GGYRCC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	40, 145, 225
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	224, 561
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	3 cut(s)	300, 504, 552
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	224, 561
BspCNI	CTCAG	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	3 cut(s)	295, 512, 560
BspQI	GCTCTTC	2 cut(s)	330, 621
BspT107I	GGYRCC	1 cut(s)	237
BspTI	CTTAAG	2 cut(s)	62, 632
BsrI	ACTGG	2 cut(s)	54, 454
BssECI	CCNNGG	3 cut(s)	40, 219, 548
BssMI	GATC	3 cut(s)	300, 504, 552
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	41, 226
Bst4CI	ACNGT	2 cut(s)	117, 349
Bst6I	CTCTTC	2 cut(s)	330, 621
BstAFI	CTTAAG	2 cut(s)	62, 632
BstDEI	CTNAG	1 cut(s)	556
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	3 cut(s)	303, 507, 555
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	300, 504, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	581, 628
BstNI	CCWGG	2 cut(s)	41, 226
BstSCI	CCNGG	3 cut(s)	39, 137, 224
BstV1I	GCAGC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	504, 552
BstYI	RGATCY	2 cut(s)	504, 552
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	2 cut(s)	224, 561
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	277
Csp6I	GTAC	5 cut(s)	142, 229, 238, 413, 474
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	5 cut(s)	28, 145, 232, 338, 623
CviQI	GTAC	5 cut(s)	142, 229, 238, 413, 474
DdeI	CTNAG	1 cut(s)	556
DpnI	GATC	3 cut(s)	302, 506, 554
DpnII	GATC	3 cut(s)	300, 504, 552
Eam1104I	CTCTTC	2 cut(s)	330, 621
EarI	CTCTTC	2 cut(s)	330, 621
Eco130I	CCWWGG	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	39, 224
EcoT14I	CCWWGG	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	5 cut(s)	31, 148, 235, 341, 626
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	5 cut(s)	27, 144, 231, 337, 622
Fnu4HI	GCNGC	1 cut(s)	527
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	527
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	224, 561
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	5 cut(s)	31, 148, 235, 341, 626
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	3 cut(s)	4, 67, 331
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	5 cut(s)	206, 287, 300, 330, 570
Hpy188III	TCNNGA	4 cut(s)	110, 429, 541, 607
Hpy8I	GTNNAC	1 cut(s)	366
HpyCH4III	ACNGT	2 cut(s)	117, 349
HpyCH4IV	ACGT	2 cut(s)	424, 459
HpyCH4V	TGCA	3 cut(s)	89, 395, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	581, 628
HpyF3I	CTNAG	1 cut(s)	556
HpySE526I	ACGT	2 cut(s)	424, 459
Hsp92II	CATG	5 cut(s)	31, 148, 235, 341, 626
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	300, 504, 552
LguI	GCTCTTC	2 cut(s)	330, 621
Lsp1109I	GCAGC	1 cut(s)	513
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	424, 459
MalI	GATC	3 cut(s)	302, 506, 554
MboI	GATC	3 cut(s)	300, 504, 552
MboII	GAAGA	8 cut(s)	190, 287, 317, 458, 485, 508, 628, 638
MfeI	CAATTG	2 cut(s)	407, 499
MflI	RGATCY	2 cut(s)	504, 552
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	3 cut(s)	351, 407, 499
MnlI	CCTC	3 cut(s)	47, 110, 228
MseI	TTAA	2 cut(s)	63, 633
MspCI	CTTAAG	2 cut(s)	62, 632
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	3 cut(s)	41, 139, 226
MunI	CAATTG	2 cut(s)	407, 499
MvaI	CCWGG	2 cut(s)	41, 226
MwoI	GCNNNNNNNGC	2 cut(s)	581, 628
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	300, 504, 552
NlaIII	CATG	5 cut(s)	31, 148, 235, 341, 626
NlaIV	GGNNCC	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	561
PciSI	GCTCTTC	2 cut(s)	330, 621
PfeI	GAWTC	3 cut(s)	4, 67, 331
PflMI	CCANNNNNTGG	2 cut(s)	40, 225
PkrI	GCNGC	1 cut(s)	528
Psp1406I	AACGTT	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	39, 224
PspGI	CCWGG	2 cut(s)	39, 224
PspN4I	GGNNCC	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	504, 552
RsaI	GTAC	5 cut(s)	143, 230, 239, 414, 475
RsaNI	GTAC	5 cut(s)	142, 229, 238, 413, 474
SapI	GCTCTTC	2 cut(s)	330, 621
SaqAI	TTAA	2 cut(s)	63, 633
SatI	GCNGC	1 cut(s)	527
Sau3AI	GATC	3 cut(s)	300, 504, 552
ScrFI	CCNGG	3 cut(s)	41, 139, 226
SduI	GDGCHC	1 cut(s)	487
SmlI	CTYRAG	3 cut(s)	62, 108, 632
SmoI	CTYRAG	3 cut(s)	62, 108, 632
Sse9I	AATT	3 cut(s)	351, 407, 499
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	3 cut(s)	39, 137, 224
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	2 cut(s)	117, 349
TaiI	ACGT	2 cut(s)	427, 462
TaqI	TCGA	1 cut(s)	481
TasI	AATT	3 cut(s)	351, 407, 499
TfiI	GAWTC	3 cut(s)	4, 67, 331
Tru1I	TTAA	2 cut(s)	63, 633
Tru9I	TTAA	2 cut(s)	63, 633
TseI	GCWGC	1 cut(s)	526
TspDTI	ATGAA	4 cut(s)	17, 190, 288, 639
Van91I	CCANNNNNTGG	2 cut(s)	40, 225
Vha464I	CTTAAG	2 cut(s)	62, 632
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.