Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Forward (+)

30047558 .. 30050152

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G324900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATCTATTTAGGTTAGCAGGAGACCTAACCCATCTGCTCAGCATAGTGGTCTTGTTCCGTAAGATCCGCACCACCAAATCTTGTGCAGGAATTTCACTCAAAACTCAAGAACTCTACGGGTTGGTCTTTCTTACTCGATACATTGACTTGGTTATCAAGTATCACTCCTTGTATAACACTTTAGGGAAGCTCATCTTTATTGGAACTTCTCTTGCCACGGTCTGCCACATGAGGTACCATAAAGTAGTGAAGCAAACCTACAACAAAGATCAAGATACTTTCAGACATTACTATCTCATCCTTTTTTGCTTGGGGCTGGCTCTTCTGATTCCGCGTTCTTTTACAGTAATTGAGGTTCTTTGGGCATTTTCAATATATCTTGAAGCCGTAGCAATCTTACCACAATTGGTTTTACTGCAAAGGTCAAGAAACATTGATAACTTAACTGGAAACTACGTTTTCCTTCTTGGTGCTTACCGAGCCCTATATCTTCTCAATTGGATTTATCGTTTCTTCACAGAGCTTCACAGAGTTCTCTGGATACCTTGGGTTTCAGGCCTTGTTCAGACTGCTCTTTATGCTGACTTTTTCTACTACTATATTAAGAGCTGGAAGAAACACGAGGAGCTTAAGCTTCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

216

Amino Acids

25.36

Weight (kDa)

9.62

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AccII	CGCG	1 cut(s)	337
AciI	CCGC	2 cut(s)	70, 335
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	632
AgsI	TTSAA	2 cut(s)	375, 386
AluBI	AGCT	5 cut(s)	193, 526, 612, 631, 637
AluI	AGCT	5 cut(s)	193, 526, 612, 631, 637
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	559
ApoI	RAATTY	1 cut(s)	93
Asp718I	GGTACC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	487
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BauI	CACGAG	1 cut(s)	623
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	632
BfuI	GTATCC	1 cut(s)	537
BlpI	GCTNAGC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	239
Bpu1102I	GCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	219, 548
Bse1I	ACTGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	219, 548
BseGI	GGATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	561
BshNI	GGYRCC	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	561
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	66, 271
Bsp1720I	GCTNAGC	1 cut(s)	41
BspACI	CCGC	2 cut(s)	70, 335
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	237
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	219, 548
BssMI	GATC	2 cut(s)	66, 271
BssSI	CACGAG	1 cut(s)	623
BssT1I	CCWWGG	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	623
Bst4CI	ACNGT	2 cut(s)	223, 349
Bst6I	CTCTTC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	69, 274
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	2 cut(s)	66, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 581
BstUI	CGCG	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	561
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	68, 273
DpnII	GATC	2 cut(s)	66, 271
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	548
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	1 cut(s)	235
FaiI	YATR	8 cut(s)	47, 177, 233, 243, 379, 490, 582, 603
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	1 cut(s)	231
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	561
Hin1II	CATG	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	2 cut(s)	4, 331
Hpy188I	TCNGA	3 cut(s)	287, 330, 570
Hpy188III	TCNNGA	5 cut(s)	110, 275, 383, 429, 541
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	223, 349
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	89, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 581
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	235
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	66, 271
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	628
LpnPI	CCDG	7 cut(s)	6, 75, 305, 435, 526, 543, 598
MaeII	ACGT	1 cut(s)	459
MalI	GATC	2 cut(s)	68, 273
MboI	GATC	2 cut(s)	66, 271
MboII	GAAGA	4 cut(s)	317, 485, 508, 628
MfeI	CAATTG	2 cut(s)	407, 499
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	4 cut(s)	93, 351, 407, 499
MnlI	CCTC	3 cut(s)	228, 349, 619
MseI	TTAA	3 cut(s)	446, 606, 633
MspCI	CTTAAG	1 cut(s)	632
MunI	CAATTG	2 cut(s)	407, 499
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	482, 581
NdeII	GATC	2 cut(s)	66, 271
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	4, 331
PspN4I	GGNNCC	1 cut(s)	239
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PsuI	RGATCY	1 cut(s)	66
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	446, 606, 633
Sau3AI	GATC	2 cut(s)	66, 271
SduI	GDGCHC	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	108, 632
SmoI	CTYRAG	2 cut(s)	108, 632
Sse9I	AATT	4 cut(s)	93, 351, 407, 499
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	2 cut(s)	70, 335
StuI	AGGCCT	1 cut(s)	561
StyI	CCWWGG	1 cut(s)	548
TaaI	ACNGT	2 cut(s)	223, 349
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	139
TasI	AATT	4 cut(s)	93, 351, 407, 499
TfiI	GAWTC	2 cut(s)	4, 331
Tru1I	TTAA	3 cut(s)	446, 606, 633
Tru9I	TTAA	3 cut(s)	446, 606, 633
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	632
XapI	RAATTY	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.