Prupe.1G009000_v2.0.a1

ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001878
Physical Location & Seq
Forward (+)
728129 .. 733831
5703 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G009000.2

Sequence Viewer

Length: 648 bp
ATGAATATATTCAGATTAGCAGGGGATATGACCCATTTGGCTAGCGTTCTGGTTTTGCTCCTCAAGATCCACACTATCAAATCCTGTGCCGGTGTTTCCTTGAAGACTCAAGAACTCTATGCTCTTGTTTTTGCAACCCGCTATTTGGATATCTTTTTCAACTTCATCTCGTTTTATAATACCATAATGAAGTTAATATTTTTGGGTAGCTCTTTCTCAATTGTTTGGTACATACGGCGCCACAGGATTGTTCGGAGATCATATGATAAGGACCAAGATACATTTCGCCATTTATTTCTCCTGCTCCCCTGCCTGCTTTTGGCTCTGGTTATAAATGAGAGGTTCACTTTTAAAGAGGTGCTGTGGACATTTTCTTTATATTTGGAAGCAGTCGCCATACTTCCTCAGCTGGTGCTGTTGCAAAGGACAAGAAATATTGACAACTTAACAGGGCAATATGTTTTCCTCCTTGGTGCATATCGAGCATTATACATATTGAACTGGATCTACCGCTACTTTACTGAGGAACACTATGTCCATTGGATCACTTGGATAGCAGGGACTATCCAGACTTTGCTCTATGGTGATTTCTTCTACTATTACTTCCAGAGCTGGAAGAACAATGTAAGGCTCGAGCTGCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05110 map05110
Pfam Domains
Protein Families
ER_lumen_recept

Protein Analysis

216

Amino Acids

25.76

Weight (kDa)

9.39

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 177, 332
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 2 cut(s) 139, 511
AclWI GGATC 3 cut(s) 61, 512, 551
AcyI GRCGYC 1 cut(s) 238
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 145, 319
AgsI TTSAA 3 cut(s) 103, 160, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AloI GAACNNNNNNTCC 2 cut(s) 519, 551
AluBI AGCT 5 cut(s) 210, 409, 612, 637, 644
AluI AGCT 5 cut(s) 210, 409, 612, 637, 644
AlwI GGATC 3 cut(s) 61, 512, 551
Ama87I CYCGRG 1 cut(s) 632
ApeKI GCWGC 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 596
AsuNHI GCTAGC 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 1 cut(s) 624
BceAI ACGGC 1 cut(s) 251
BfaI CTAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 239
BmtI GCTAGC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 47, 93
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 469
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 319
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 506
BseDI CCNNGG 1 cut(s) 469
BseLI CCNNNNNNNGG 2 cut(s) 145, 319
BseMII CTCAG 2 cut(s) 419, 513
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 624
BshNI GGYRCC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 632
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 2 cut(s) 145, 319
BsmFI GGGAC 1 cut(s) 574
BsoBI CYCGRG 1 cut(s) 632
Bsp143I GATC 4 cut(s) 66, 257, 504, 543
BspACI CCGC 2 cut(s) 139, 511
BspCNI CTCAG 2 cut(s) 418, 514
BspLI GGNNCC 1 cut(s) 239
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 3 cut(s) 61, 512, 551
BspT107I GGYRCC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 4 cut(s) 66, 257, 504, 543
BssNI GRCGYC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 43, 314, 642
BstDEI CTNAG 2 cut(s) 405, 522
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 4 cut(s) 69, 260, 507, 546
BstMBI GATC 4 cut(s) 66, 257, 504, 543
BstMWI GCNNNNNNNGC 2 cut(s) 482, 637
BstV1I GCAGC 1 cut(s) 624
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 2 cut(s) 66, 504
BstYI RGATCY 2 cut(s) 66, 504
Cac8I GCNNGC 3 cut(s) 43, 314, 642
CfoI GCGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 8 cut(s) 41, 210, 323, 409, 612, 631, 637, 644
CviKI_1 RGCY 8 cut(s) 41, 210, 323, 409, 612, 631, 637, 644
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 405, 522
DinI GGCGCC 1 cut(s) 239
DpnI GATC 4 cut(s) 68, 259, 506, 545
DpnII GATC 4 cut(s) 66, 257, 504, 543
DraI TTTAAA 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 469
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 632
EcoRV GATATC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 469
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 469
FaqI GGGAC 1 cut(s) 574
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 638
Fsp4HI GCNGC 1 cut(s) 638
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 638
HaeII RGCGCY 1 cut(s) 241
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 238
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 345, 366
Hpy188I TCNGA 2 cut(s) 14, 255
Hpy188III TCNNGA 4 cut(s) 64, 110, 568, 607
Hpy8I GTNNAC 2 cut(s) 345, 366
HpyCH4V TGCA 3 cut(s) 134, 421, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 637
HpyF3I CTNAG 2 cut(s) 405, 522
Hsp92I GRCGYC 1 cut(s) 238
HspAI GCGC 1 cut(s) 238
KasI GGCGCC 1 cut(s) 237
Kzo9I GATC 4 cut(s) 66, 257, 504, 543
LmnI GCTCC 2 cut(s) 63, 309
Lsp1109I GCAGC 1 cut(s) 624
MaeI CTAG 1 cut(s) 42
MalI GATC 4 cut(s) 68, 259, 506, 545
MboI GATC 4 cut(s) 66, 257, 504, 543
MboII GAAGA 3 cut(s) 115, 583, 628
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 2 cut(s) 66, 504
MluCI AATT 1 cut(s) 219
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 6 cut(s) 71, 333, 349, 414, 476, 517
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 194, 351, 446
MspA1I CMGCKG 1 cut(s) 409
MspI CCGG 1 cut(s) 90
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 482, 637
NarI GGCGCC 1 cut(s) 238
NdeI CATATG 1 cut(s) 262
NdeII GATC 4 cut(s) 66, 257, 504, 543
NheI GCTAGC 1 cut(s) 41
NlaIV GGNNCC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 1 cut(s) 639
PleI GAGTC 1 cut(s) 100
PluTI GGCGCC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 100
PsiI TTATAA 2 cut(s) 177, 332
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 632
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PsuI RGATCY 2 cut(s) 66, 504
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 194, 351, 446
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 4 cut(s) 66, 257, 504, 543
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 100
SetI ASST 7 cut(s) 212, 344, 360, 411, 614, 639, 646
SfoI GGCGCC 1 cut(s) 239
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 632
SmlI CTYRAG 3 cut(s) 62, 108, 632
SmoI CTYRAG 3 cut(s) 62, 108, 632
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 139, 511
SspDI GGCGCC 1 cut(s) 237
SspI AATATT 2 cut(s) 198, 436
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 469
TaqI TCGA 2 cut(s) 481, 633
TasI AATT 1 cut(s) 219
Tru1I TTAA 3 cut(s) 194, 351, 446
Tru9I TTAA 3 cut(s) 194, 351, 446
TseI GCWGC 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 17, 154, 203
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.