Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Reverse (-)

37283286 .. 37288388

Gene Structure 5103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATATATTCAGATTAGCGGGAGATATGACGCATTTGGCCAGTGTTCTGGTTTTGCTTCTCAAGATCCACACTATCAAGTCATGTGCTGGCGTGTCCTTGAAGACTCAGGAACTCTATGCTCTTGTCTTTGCTACCCGCTATTTGGATATTTTTGTTAGCTTCTACTCAGTTTATAATACCTTGATGAAGTTGATATTCTTGGGTAGCTCTTTTCAATTATCATATGATAAAGACCAAGACACATTTCGCCATCTTTTTCTGTTACTCCCATGCCTACTTTTGGCCCTGGTCATCAATGAGAAATTCACTTTTAGAGAGGTGATGTGGGCTTTTTCCATATATTTGGAAGCAGTTGCCATACTTCCTCAGCTGGTGCTGTTGCAAAGGACAAGAAATATTGACAACCTAACAGGGCAATATGTAGTCCTCCTCGGGGCCTATCGAGCATTGTACATATTGAACTGGATTTACCGCTACTTTACTGAGGATCACTATGTCCACTGGATAACTTGGGTAGCAGGGATAATCCAGACCTTACTCTATGCTGATTTCTTCTACTATTACTTCCAGAGTTGGAAGAACAATGTAAAGCTTGAGCTGCCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

203

Amino Acids

23.95

Weight (kDa)

8.43

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	28 - 159	1.8e-50	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AciI	CCGC	3 cut(s)	20, 139, 475
AclWI	GGATC	2 cut(s)	61, 498
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	3 cut(s)	145, 283, 436
AgsI	TTSAA	3 cut(s)	103, 218, 463
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	6 cut(s)	162, 210, 373, 595, 601, 608
AluI	AGCT	6 cut(s)	162, 210, 373, 595, 601, 608
AlwI	GGATC	2 cut(s)	61, 498
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	39, 285, 438
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	286, 438
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	286, 438
BmiI	GGNNCC	1 cut(s)	439
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	288, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 283, 436
Bse1I	ACTGG	3 cut(s)	42, 470, 509
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	288, 433
BseLI	CCNNNNNNNGG	3 cut(s)	145, 283, 436
BseMII	CTCAG	4 cut(s)	122, 183, 383, 477
BseNI	ACTGG	3 cut(s)	42, 470, 509
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	588
BshFI	GGCC	3 cut(s)	41, 287, 440
BsiHKCI	CYCGRG	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	145, 283, 436
BsnI	GGCC	3 cut(s)	41, 287, 440
BsoBI	CYCGRG	1 cut(s)	434
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	2 cut(s)	66, 490
BspACI	CCGC	3 cut(s)	20, 139, 475
BspANI	GGCC	3 cut(s)	41, 287, 440
BspCNI	CTCAG	4 cut(s)	121, 182, 382, 478
BspLI	GGNNCC	1 cut(s)	439
BspPI	GGATC	2 cut(s)	61, 498
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	3 cut(s)	42, 470, 509
BssECI	CCNNGG	2 cut(s)	288, 433
BssMI	GATC	2 cut(s)	66, 490
Bst2UI	CCWGG	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	91, 606
BstDEI	CTNAG	4 cut(s)	108, 169, 369, 486
BstKTI	GATC	2 cut(s)	69, 493
BstMBI	GATC	2 cut(s)	66, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 601
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	66
BstXI	CCANNNNNNTGG	2 cut(s)	49, 346
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	41, 287, 440
BtsIMutI	CAGTG	2 cut(s)	49, 502
Cac8I	GCNNGC	2 cut(s)	91, 606
Cfr13I	GGNCC	2 cut(s)	286, 438
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	84, 273
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	4 cut(s)	108, 169, 369, 486
DpnI	GATC	2 cut(s)	68, 492
DpnII	GATC	2 cut(s)	66, 490
EaeI	YGGCCR	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	288
FaeI	CATG	2 cut(s)	87, 276
FatI	CATG	2 cut(s)	83, 272
FauI	CCCGC	2 cut(s)	13, 146
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	41, 287, 440
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	87, 276
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	4 cut(s)	64, 110, 532, 571
Hpy8I	GTNNAC	1 cut(s)	502
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 601
HpyF3I	CTNAG	4 cut(s)	108, 169, 369, 486
Hsp92II	CATG	2 cut(s)	87, 276
Kzo9I	GATC	2 cut(s)	66, 490
Lsp1109I	GCAGC	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	68, 492
MboI	GATC	2 cut(s)	66, 490
MboII	GAAGA	3 cut(s)	115, 547, 592
MflI	RGATCY	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	2 cut(s)	218, 305
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	557
MnlI	CCTC	5 cut(s)	313, 378, 440, 443, 481
Mox20I	TGGCCA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	2 cut(s)	446, 601
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	2 cut(s)	66, 490
NlaIII	CATG	2 cut(s)	87, 276
NlaIV	GGNNCC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	286, 438
PsrI	GAACNNNNNNTAC	2 cut(s)	455, 487
PsuI	RGATCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	2 cut(s)	66, 490
Sau96I	GGNCC	2 cut(s)	286, 438
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	62, 596
SmoI	CTYRAG	2 cut(s)	62, 596
Sse9I	AATT	2 cut(s)	218, 305
SsiI	CCGC	3 cut(s)	20, 139, 475
SspI	AATATT	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	288
TaqI	TCGA	1 cut(s)	445
TasI	AATT	2 cut(s)	218, 305
TatI	WGTACW	1 cut(s)	453
TscAI	CASTG	2 cut(s)	49, 509
TseI	GCWGC	1 cut(s)	601
TspDTI	ATGAA	2 cut(s)	17, 203
TspRI	CASTG	2 cut(s)	49, 509
XapI	RAATTY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.