Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001878

Physical Location & Seq

Genomic Coordinates Forward (+)

63316969 .. 63318435

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG458100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGCAGGCAGCACAGGATTGTTCGCAGGTCCTATGATAGAGACCAAGACACCTTCCGCCATCATTTCCTACTGGCACCATGTCTAGTTTTGGCCCTAATATTCAATGAGAAGTTCACTTTCAAGGAGGTCATGTGGTCATTTTCATTATTTTTAGAAGCTGTTGCTATCCTTCCTCAGCTTGTGCTGTTACAGAGAACGAGAAATATTGACAACTTGACAGGGCAATACGTCTTCCTCCTTGGGTTGGCTGCTTTATATCTCTGTTTCATTCTTGTGTTTGTTGCAAGTATTTTATTCAGAATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko05110 map05110

Pfam Domains

Protein Families

ER_lumen_recept

Protein Analysis

103

Amino Acids

12.18

Weight (kDa)

9.58

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ER_lumen_recept	PF00810	8 - 89	2.7e-30	ER lumen protein retaining receptor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25040
fragaria_vesca	FvH4_2g18780 FvH4_4g16540 FvH4_7g33860
malus_domestica	MD04G1009900.v1.1 MD05G1173800.v1.1 MD07G1307200.v1.1 MD10G1161700.v1.1
prunus_persica	Prupe.1G009000_v2.0.a1 Prupe.1G009000_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.2G324900_v2.0.a1 Prupe.8G201200_v2.0.a1 Prupe.8G201200_v2.0.a1
pyrus_communis	pycom04g00790 pycom05g16050 pycom07g28010 pycom10g13970 pycom420g01360
rosa_chinensis	RchiOBHm_Chr1g0383971 RchiOBHm_Chr4g0415041 RchiOBHm_Chr6g0284521
rosa_laevigata	RLG00000012741 RLG00000026082
rosa_multiflora	Rmu_co8317209.1_g000001 Rmu_sc0003611.1_g000016 Rmu_sc0005139.1_g000023 Rmu_sc0005257.1_g000002 Rmu_sc0008157.1_g000010
rosa_roxburghii	Rroxscaffold_4G00277090 Rroxscaffold_5G00358830 Rroxscaffold_7G00184640
rosa_rugosa	Rorug01G0443900 Rorug03G0185300 Rorug04G0132100 Rorug06G0164000
rosa_samantha	Rh1BG427200 Rh1DG460000 Rh4CG202300 Rh5BG021800 Rh6BG244900 Rh6CG279100 Rh6CG458100
rosa_wichuraiana	Rw1G040290 Rw4G016270 Rw6G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	106, 124
AluBI	AGCT	2 cut(s)	161, 181
AluI	AGCT	2 cut(s)	161, 181
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	10, 251
AspS9I	GGNCC	2 cut(s)	30, 94
AvaII	GGWCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	22, 238
BccI	CCATC	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	11, 252
BlsI	GCNGC	2 cut(s)	12, 253
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	30, 94
BmiI	GGNNCC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	22, 238
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	36
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	22, 238
BstV2I	GAAGAC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	95
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	30, 94
CviAII	CATG	2 cut(s)	81, 133
CviJI	RGCY	4 cut(s)	95, 161, 181, 251
CviKI_1	RGCY	4 cut(s)	95, 161, 181, 251
DdeI	CTNAG	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	84, 136
FaiI	YATR	6 cut(s)	36, 82, 134, 259, 308, 310
FatI	CATG	2 cut(s)	80, 132
Fnu4HI	GCNGC	2 cut(s)	11, 252
Fsp4HI	GCNGC	2 cut(s)	11, 252
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	11, 252
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	84, 136
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	64, 182
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	84, 136
LpnPI	CCDG	3 cut(s)	13, 59, 207
Lsp1109I	GCAGC	2 cut(s)	22, 238
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	226
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	3 cut(s)	121, 186, 248
MslI	CAYNNNNRTG	1 cut(s)	275
NlaIII	CATG	2 cut(s)	84, 136
NlaIV	GGNNCC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	12, 253
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	30, 94
PspPPI	RGGWCCY	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	275
SatI	GCNGC	2 cut(s)	11, 252
Sau96I	GGNCC	2 cut(s)	30, 94
SetI	ASST	6 cut(s)	32, 56, 132, 163, 183, 234
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	58
SspI	AATATT	2 cut(s)	102, 208
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	241
TaiI	ACGT	1 cut(s)	234
TasI	AATT	1 cut(s)	303
TseI	GCWGC	2 cut(s)	10, 251
TspDTI	ATGAA	2 cut(s)	135, 259
VpaK11BI	GGWCC	1 cut(s)	30
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.