pycom04g00790

ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0001878
Physical Location & Seq
Forward (+)
728870 .. 733740
4871 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g00790.3

Sequence Viewer

Length: 648 bp
ATGAATATATTCAGATTAGCAGGGGATATGACCCATTTGGCCAGCGTTCTGGTTTTGCTTCTCAAGATCCACACTATCAAATCCTGTTCTGGTGTTTCCTTGAAGACTCAAGAACTCTATGCTCTTGTCTTTGCAACCCGCTATTTGGATATTTTTATTACCTACGTCTCGTTTTATAATACTGTGATGAAGTTGATATTTTTGGGTAGCTCTTTCTCAATTGTTTGGTACATAAGGCGCCACAGGGTTGTTCGGAGATCATATGATAAGGACCAAGACACATTCCGCCATTTATTCCTTCTGCTCCCTTGTCTTGTTTTGGCCCTGGTTATAAATGAGAAGTTCACTTTTAAAGAGGTGATGTGGACATTTTCCATATATTTGGAAGCAGTTGCCATACTTCCTCAGCTGGTGCTGTTGCAAAGGACAAGAAACATTGACAACTTAACAGGGCAATATGTTTTCCTTCTTGGAGCATACCGAGCATTATACATATTGAACTGGATTTATCGCTACTTTACTGAGGAACACTATGTCCACTGGATAACTTGGATTGCAGGGATTATCCAGACTTTGCTCTATGCTGATTTCTTCTACTATTACTTCCAGAGCTGGAAGAACAGCGTAAAGCTCGAGCTACCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05110 map05110
Pfam Domains
Protein Families
ER_lumen_recept

Protein Analysis

216

Amino Acids

25.65

Weight (kDa)

9.33

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 177, 332
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 2 cut(s) 139, 286
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 238
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 145
AgsI TTSAA 2 cut(s) 103, 499
AjnI CCWGG 1 cut(s) 324
AloI GAACNNNNNNTCC 2 cut(s) 519, 551
AluBI AGCT 6 cut(s) 210, 409, 612, 631, 637, 644
AluI AGCT 6 cut(s) 210, 409, 612, 631, 637, 644
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 632
AoxI GGCC 2 cut(s) 39, 321
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 271, 322
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 632
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 405
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 632
BmgT120I GGNCC 2 cut(s) 271, 322
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 47, 93
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 506, 545
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 419, 513
BseNI ACTGG 2 cut(s) 506, 545
BshFI GGCC 2 cut(s) 41, 323
BshNI GGYRCC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsnI GGCC 2 cut(s) 41, 323
BsoBI CYCGRG 1 cut(s) 632
Bsp143I GATC 2 cut(s) 66, 257
BspACI CCGC 2 cut(s) 139, 286
BspANI GGCC 2 cut(s) 41, 323
BspCNI CTCAG 2 cut(s) 418, 514
BspLI GGNNCC 1 cut(s) 239
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 506, 545
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 66, 257
BssNI GRCGYC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 405, 522
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 69, 260
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 2 cut(s) 66, 257
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 66
BstXI CCANNNNNNTGG 2 cut(s) 49, 382
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 2 cut(s) 41, 323
BtsIMutI CAGTG 1 cut(s) 538
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 271, 322
Csp6I GTAC 1 cut(s) 229
CviJI RGCY 8 cut(s) 41, 210, 323, 409, 612, 631, 637, 644
CviKI_1 RGCY 8 cut(s) 41, 210, 323, 409, 612, 631, 637, 644
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 2 cut(s) 405, 522
DinI GGCGCC 1 cut(s) 239
DpnI GATC 2 cut(s) 68, 259
DpnII GATC 2 cut(s) 66, 257
DraI TTTAAA 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 39
EciI GGCGGA 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 172
FauI CCCGC 1 cut(s) 146
FauNDI CATATG 1 cut(s) 262
GlaI GCGC 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 241
HaeIII GGCC 2 cut(s) 41, 323
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 238
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 3 cut(s) 345, 366, 538
Hpy188I TCNGA 2 cut(s) 14, 255
Hpy188III TCNNGA 4 cut(s) 64, 110, 568, 607
Hpy8I GTNNAC 3 cut(s) 345, 366, 538
HpyAV CCTTC 2 cut(s) 308, 476
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 134, 421, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 2 cut(s) 405, 522
HpySE526I ACGT 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 238
HspAI GCGC 1 cut(s) 238
KasI GGCGCC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 66, 257
LmnI GCTCC 2 cut(s) 309, 473
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 68, 259
MboI GATC 2 cut(s) 66, 257
MboII GAAGA 3 cut(s) 115, 583, 628
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 66
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 219
MluNI TGGCCA 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 1 cut(s) 100
MnlI CCTC 3 cut(s) 349, 414, 517
Mox20I TGGCCA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 351, 446
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 482
NarI GGCGCC 1 cut(s) 238
NdeI CATATG 1 cut(s) 262
NdeII GATC 2 cut(s) 66, 257
NlaIV GGNNCC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 100
PluTI GGCGCC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 100
PsiI TTATAA 2 cut(s) 177, 332
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 271, 322
PspXI VCTCGAGB 1 cut(s) 632
PsuI RGATCY 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 351, 446
Sau3AI GATC 2 cut(s) 66, 257
Sau96I GGNCC 2 cut(s) 271, 322
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 326
SetI ASST 9 cut(s) 164, 168, 212, 360, 411, 614, 633, 639, 646
SfoI GGCGCC 1 cut(s) 239
Sfr274I CTCGAG 1 cut(s) 632
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 632
SmlI CTYRAG 3 cut(s) 62, 108, 632
SmoI CTYRAG 3 cut(s) 62, 108, 632
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 139, 286
SspDI GGCGCC 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 184
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 633
TasI AATT 1 cut(s) 219
Tru1I TTAA 2 cut(s) 351, 446
Tru9I TTAA 2 cut(s) 351, 446
TscAI CASTG 1 cut(s) 545
TspDTI ATGAA 2 cut(s) 17, 203
TspRI CASTG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.